EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPNAG00000023467 (Gene tree)
Gene ID
108444062
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Pygocentrus_nattereri
Status
putative
Strand
Minus strand
Length
7932 bases
Position
chrKV575897.1:88548-96479
Accession
108444062
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNAP00000017243LSMPF01423.223.7e-2011
ENSPNAP00000017232LSMPF01423.223.8e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNAT00000025949-1568XM_017725034ENSPNAP00000017243103 (aa)XP_017580523UPI000440FCEC
ENSPNAT00000025960-1455XM_017725035ENSPNAP00000017232102 (aa)XP_017580524UPI000440B6B6
Gene Model
Click here to download ENSPNAG00000023467's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000023467's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPNAG00000023467lsm37436.000ENSPNAG00000001887lsm58236.000
ENSPNAG00000023467lsm37732.927ENSPNAG00000025554snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNAG00000023467lsm310097.059ENSG00000170860LSM310097.059Homo_sapiens
ENSPNAG00000023467lsm310098.039ENSAPOG00000018947lsm310098.039Acanthochromis_polyacanthus
ENSPNAG00000023467lsm310097.059ENSAMEG00000009405LSM310097.059Ailuropoda_melanoleuca
ENSPNAG00000023467lsm310097.059ENSACIG00000004574lsm37197.059Amphilophus_citrinellus
ENSPNAG00000023467lsm310098.039ENSAOCG00000007658lsm310098.039Amphiprion_ocellaris
ENSPNAG00000023467lsm310098.039ENSAPEG00000018621lsm310098.039Amphiprion_percula
ENSPNAG00000023467lsm310098.039ENSATEG00000005153lsm310098.039Anabas_testudineus
ENSPNAG00000023467lsm39398.947ENSAPLG00000014499LSM310098.947Anas_platyrhynchos
ENSPNAG00000023467lsm310098.039ENSACAG00000013503LSM310098.039Anolis_carolinensis
ENSPNAG00000023467lsm310093.137ENSANAG00000002903-10093.137Aotus_nancymaae
ENSPNAG00000023467lsm310097.059ENSANAG00000034627LSM310097.059Aotus_nancymaae
ENSPNAG00000023467lsm39597.938ENSACLG00000001726-9497.938Astatotilapia_calliptera
ENSPNAG00000023467lsm3100100.000ENSAMXG00000041214lsm3100100.000Astyanax_mexicanus
ENSPNAG00000023467lsm39498.958ENSBTAG00000007363LSM310098.958Bos_taurus
ENSPNAG00000023467lsm310070.588WBGene00003077lsm-310070.588Caenorhabditis_elegans
ENSPNAG00000023467lsm310095.098ENSCAFG00000001760LSM310095.098Canis_familiaris
ENSPNAG00000023467lsm310088.235ENSCAFG00020016680-10088.235Canis_lupus_dingo
ENSPNAG00000023467lsm310094.118ENSCAFG00020026452-10094.118Canis_lupus_dingo
ENSPNAG00000023467lsm310095.098ENSCAFG00020021584-10095.098Canis_lupus_dingo
ENSPNAG00000023467lsm310095.098ENSCAFG00020017266-10095.098Canis_lupus_dingo
ENSPNAG00000023467lsm310086.916ENSCAFG00020020950-10086.916Canis_lupus_dingo
ENSPNAG00000023467lsm310097.059ENSCHIG00000024650LSM310097.059Capra_hircus
ENSPNAG00000023467lsm310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSPNAG00000023467lsm39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSPNAG00000023467lsm39498.958ENSCAPG00000015760LSM310098.958Cavia_aperea
ENSPNAG00000023467lsm310097.059ENSCPOG00000034071LSM310097.059Cavia_porcellus
ENSPNAG00000023467lsm310097.059ENSCCAG00000036499-10097.059Cebus_capucinus
ENSPNAG00000023467lsm310077.451ENSCCAG00000032763-10077.451Cebus_capucinus
ENSPNAG00000023467lsm310097.059ENSCCAG00000019503-10097.059Cebus_capucinus
ENSPNAG00000023467lsm39977.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSPNAG00000023467lsm310097.059ENSCATG00000039421LSM310097.059Cercocebus_atys
ENSPNAG00000023467lsm310097.059ENSCLAG00000015997LSM310097.059Chinchilla_lanigera
ENSPNAG00000023467lsm310092.157ENSCSAG00000019525-10092.157Chlorocebus_sabaeus
ENSPNAG00000023467lsm310098.039ENSCPBG00000014531LSM310098.039Chrysemys_picta_bellii
ENSPNAG00000023467lsm310082.692ENSCSAVG00000009542-10082.692Ciona_savignyi
ENSPNAG00000023467lsm310094.118ENSCANG00000018782-10094.118Colobus_angolensis_palliatus
ENSPNAG00000023467lsm310094.118ENSCANG00000038037-10094.118Colobus_angolensis_palliatus
ENSPNAG00000023467lsm310097.059ENSCANG00000033944-10097.059Colobus_angolensis_palliatus
ENSPNAG00000023467lsm310073.786ENSCGRG00001008639-10073.786Cricetulus_griseus_chok1gshd
ENSPNAG00000023467lsm39882.000ENSCGRG00001011396-10082.000Cricetulus_griseus_chok1gshd
ENSPNAG00000023467lsm310097.059ENSCGRG00001017598Lsm310097.059Cricetulus_griseus_chok1gshd
ENSPNAG00000023467lsm39384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSPNAG00000023467lsm310097.059ENSCGRG00000016159Lsm310097.059Cricetulus_griseus_crigri
ENSPNAG00000023467lsm310098.039ENSCSEG00000015071lsm37798.039Cynoglossus_semilaevis
ENSPNAG00000023467lsm310097.059ENSCVAG00000006933lsm310097.059Cyprinodon_variegatus
ENSPNAG00000023467lsm310098.039ENSDARG00000089663lsm310098.039Danio_rerio
ENSPNAG00000023467lsm310097.059ENSDNOG00000030808LSM310097.059Dasypus_novemcinctus
ENSPNAG00000023467lsm310097.059ENSDORG00000006894-10097.059Dipodomys_ordii
ENSPNAG00000023467lsm310077.451ENSDORG00000024490-10077.451Dipodomys_ordii
ENSPNAG00000023467lsm310079.612FBgn0051184LSm310079.612Drosophila_melanogaster
ENSPNAG00000023467lsm310097.059ENSETEG00000016207LSM310097.059Echinops_telfairi
ENSPNAG00000023467lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSPNAG00000023467lsm310097.059ENSEASG00005015443LSM310097.059Equus_asinus_asinus
ENSPNAG00000023467lsm310097.059ENSECAG00000007803LSM310097.059Equus_caballus
ENSPNAG00000023467lsm310099.020ENSELUG00000018922lsm310099.020Esox_lucius
ENSPNAG00000023467lsm310073.529ENSFCAG00000044344-10073.529Felis_catus
ENSPNAG00000023467lsm310097.059ENSFCAG00000038453LSM310097.059Felis_catus
ENSPNAG00000023467lsm310098.039ENSFALG00000012644LSM310098.039Ficedula_albicollis
ENSPNAG00000023467lsm310097.059ENSFDAG00000011470LSM310097.059Fukomys_damarensis
ENSPNAG00000023467lsm310098.039ENSFHEG00000000876lsm310098.039Fundulus_heteroclitus
ENSPNAG00000023467lsm39397.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSPNAG00000023467lsm310098.039ENSGAFG00000013965lsm310098.039Gambusia_affinis
ENSPNAG00000023467lsm310098.039ENSGACG00000003488lsm310098.039Gasterosteus_aculeatus
ENSPNAG00000023467lsm310098.039ENSGAGG00000025707LSM310098.039Gopherus_agassizii
ENSPNAG00000023467lsm310097.059ENSGGOG00000010006LSM310097.059Gorilla_gorilla
ENSPNAG00000023467lsm310098.039ENSHBUG00000022399lsm310098.039Haplochromis_burtoni
ENSPNAG00000023467lsm310077.451ENSHGLG00000015564-10077.451Heterocephalus_glaber_female
ENSPNAG00000023467lsm310097.059ENSHGLG00000000651LSM310097.059Heterocephalus_glaber_female
ENSPNAG00000023467lsm310077.451ENSHGLG00100010658-10077.451Heterocephalus_glaber_male
ENSPNAG00000023467lsm310097.059ENSHGLG00100011343LSM310097.059Heterocephalus_glaber_male
ENSPNAG00000023467lsm310097.059ENSHCOG00000013481lsm310097.059Hippocampus_comes
ENSPNAG00000023467lsm310098.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSPNAG00000023467lsm310097.059ENSSTOG00000006842LSM310097.059Ictidomys_tridecemlineatus
ENSPNAG00000023467lsm39974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSPNAG00000023467lsm310097.059ENSJJAG00000017351Lsm310097.059Jaculus_jaculus
ENSPNAG00000023467lsm310088.235ENSJJAG00000012797-10088.235Jaculus_jaculus
ENSPNAG00000023467lsm310097.059ENSKMAG00000015182lsm310097.059Kryptolebias_marmoratus
ENSPNAG00000023467lsm39695.918ENSLBEG00000021292lsm310095.918Labrus_bergylta
ENSPNAG00000023467lsm310098.039ENSLOCG00000013560lsm310098.039Lepisosteus_oculatus
ENSPNAG00000023467lsm310096.117ENSLAFG00000023308LSM310096.117Loxodonta_africana
ENSPNAG00000023467lsm310097.059ENSMFAG00000003185LSM310097.059Macaca_fascicularis
ENSPNAG00000023467lsm310097.059ENSMMUG00000023126LSM310097.059Macaca_mulatta
ENSPNAG00000023467lsm39677.551ENSMMUG00000002294-9577.551Macaca_mulatta
ENSPNAG00000023467lsm310074.510ENSMMUG00000043596-10074.510Macaca_mulatta
ENSPNAG00000023467lsm39979.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSPNAG00000023467lsm310097.059ENSMNEG00000043632LSM310097.059Macaca_nemestrina
ENSPNAG00000023467lsm310097.059ENSMLEG00000036162LSM310097.059Mandrillus_leucophaeus
ENSPNAG00000023467lsm310098.039ENSMAMG00000012807lsm310098.039Mastacembelus_armatus
ENSPNAG00000023467lsm310098.039ENSMZEG00005016682lsm37398.039Maylandia_zebra
ENSPNAG00000023467lsm39498.958ENSMGAG00000007776LSM310098.958Meleagris_gallopavo
ENSPNAG00000023467lsm310096.078ENSMICG00000032361-10096.078Microcebus_murinus
ENSPNAG00000023467lsm310082.353ENSMICG00000027821-10082.353Microcebus_murinus
ENSPNAG00000023467lsm310097.059ENSMOCG00000014269Lsm310097.059Microtus_ochrogaster
ENSPNAG00000023467lsm310097.059ENSMMOG00000020715lsm310097.059Mola_mola
ENSPNAG00000023467lsm310096.078ENSMODG00000007275LSM310096.078Monodelphis_domestica
ENSPNAG00000023467lsm310098.039ENSMALG00000006485lsm310098.039Monopterus_albus
ENSPNAG00000023467lsm310097.059ENSMUSG00000034192Lsm310097.059Mus_musculus
ENSPNAG00000023467lsm310097.059MGP_PahariEiJ_G0022402Lsm310097.059Mus_pahari
ENSPNAG00000023467lsm310097.059MGP_SPRETEiJ_G0029681Lsm310097.059Mus_spretus
ENSPNAG00000023467lsm38389.412ENSMPUG00000017256-10089.412Mustela_putorius_furo
ENSPNAG00000023467lsm39785.859ENSMPUG00000019120-9785.859Mustela_putorius_furo
ENSPNAG00000023467lsm310092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSPNAG00000023467lsm310097.059ENSMLUG00000010677LSM310097.059Myotis_lucifugus
ENSPNAG00000023467lsm310071.569ENSNGAG00000013716-10071.569Nannospalax_galili
ENSPNAG00000023467lsm39979.208ENSNGAG00000010207-9979.208Nannospalax_galili
ENSPNAG00000023467lsm310097.059ENSNGAG00000022450Lsm310097.059Nannospalax_galili
ENSPNAG00000023467lsm310098.039ENSNBRG00000014318lsm310098.039Neolamprologus_brichardi
ENSPNAG00000023467lsm310097.059ENSNLEG00000005079LSM310097.059Nomascus_leucogenys
ENSPNAG00000023467lsm310088.235ENSNLEG00000030229-10088.235Nomascus_leucogenys
ENSPNAG00000023467lsm310095.098ENSODEG00000019158-10095.098Octodon_degus
ENSPNAG00000023467lsm310096.078ENSODEG00000019740-10096.078Octodon_degus
ENSPNAG00000023467lsm310097.059ENSODEG00000001726LSM310097.059Octodon_degus
ENSPNAG00000023467lsm310089.216ENSODEG00000019403-10089.216Octodon_degus
ENSPNAG00000023467lsm310098.039ENSONIG00000000370lsm310098.039Oreochromis_niloticus
ENSPNAG00000023467lsm310098.039ENSONIG00000021369-10098.039Oreochromis_niloticus
ENSPNAG00000023467lsm310096.078ENSOANG00000012273LSM310096.078Ornithorhynchus_anatinus
ENSPNAG00000023467lsm310097.059ENSOCUG00000027653-10097.059Oryctolagus_cuniculus
ENSPNAG00000023467lsm310092.157ENSOCUG00000011088-10092.157Oryctolagus_cuniculus
ENSPNAG00000023467lsm310096.078ENSORLG00000025900lsm310096.078Oryzias_latipes
ENSPNAG00000023467lsm310096.078ENSORLG00020007125lsm310096.078Oryzias_latipes_hni
ENSPNAG00000023467lsm310096.078ENSORLG00015002944lsm310096.078Oryzias_latipes_hsok
ENSPNAG00000023467lsm310096.078ENSOMEG00000001915lsm310096.078Oryzias_melastigma
ENSPNAG00000023467lsm39695.918ENSOGAG00000028858-10095.918Otolemur_garnettii
ENSPNAG00000023467lsm310097.059ENSOGAG00000007659-10097.059Otolemur_garnettii
ENSPNAG00000023467lsm310087.255ENSOGAG00000033051-10087.255Otolemur_garnettii
ENSPNAG00000023467lsm310096.117ENSOARG00000000600LSM310096.117Ovis_aries
ENSPNAG00000023467lsm310097.059ENSPPAG00000034074LSM310097.059Pan_paniscus
ENSPNAG00000023467lsm310097.059ENSPPRG00000012912-10097.059Panthera_pardus
ENSPNAG00000023467lsm39989.109ENSPPRG00000010610-8989.109Panthera_pardus
ENSPNAG00000023467lsm310096.078ENSPPRG00000020953-10096.078Panthera_pardus
ENSPNAG00000023467lsm310097.059ENSPTIG00000013072-10097.059Panthera_tigris_altaica
ENSPNAG00000023467lsm310097.059ENSPTIG00000003463-10097.059Panthera_tigris_altaica
ENSPNAG00000023467lsm310097.059ENSPTRG00000014650LSM310097.059Pan_troglodytes
ENSPNAG00000023467lsm310075.490ENSPANG00000032192-10075.490Papio_anubis
ENSPNAG00000023467lsm310097.059ENSPANG00000009378LSM310097.059Papio_anubis
ENSPNAG00000023467lsm310099.020ENSPKIG00000008037lsm39199.020Paramormyrops_kingsleyae
ENSPNAG00000023467lsm310098.039ENSPSIG00000015720LSM310098.039Pelodiscus_sinensis
ENSPNAG00000023467lsm39593.814ENSPMGG00000012103lsm39893.814Periophthalmus_magnuspinnatus
ENSPNAG00000023467lsm310097.059ENSPEMG00000015797Lsm310097.059Peromyscus_maniculatus_bairdii
ENSPNAG00000023467lsm310081.373ENSPEMG00000020213-10081.373Peromyscus_maniculatus_bairdii
ENSPNAG00000023467lsm310098.039ENSPFOG00000008372lsm310098.039Poecilia_formosa
ENSPNAG00000023467lsm310098.039ENSPLAG00000000563lsm310098.039Poecilia_latipinna
ENSPNAG00000023467lsm310098.039ENSPMEG00000022052lsm310098.039Poecilia_mexicana
ENSPNAG00000023467lsm310098.039ENSPREG00000022485lsm310098.039Poecilia_reticulata
ENSPNAG00000023467lsm310097.059ENSPPYG00000013402LSM310097.059Pongo_abelii
ENSPNAG00000023467lsm310097.059ENSPCAG00000017077LSM310097.059Procavia_capensis
ENSPNAG00000023467lsm39476.042ENSPCOG00000014435-9876.042Propithecus_coquereli
ENSPNAG00000023467lsm310096.078ENSPCOG00000016217-10096.078Propithecus_coquereli
ENSPNAG00000023467lsm310097.059ENSPVAG00000016795LSM310097.059Pteropus_vampyrus
ENSPNAG00000023467lsm310098.039ENSPNYG00000009552lsm37398.039Pundamilia_nyererei
ENSPNAG00000023467lsm310097.059ENSRNOG00000008733Lsm310097.059Rattus_norvegicus
ENSPNAG00000023467lsm310097.059ENSRBIG00000034399LSM310097.059Rhinopithecus_bieti
ENSPNAG00000023467lsm310081.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSPNAG00000023467lsm310086.275ENSRROG00000044047-10086.275Rhinopithecus_roxellana
ENSPNAG00000023467lsm310078.431ENSRROG00000044056-10078.431Rhinopithecus_roxellana
ENSPNAG00000023467lsm310082.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSPNAG00000023467lsm310097.059ENSRROG00000033276-10097.059Rhinopithecus_roxellana
ENSPNAG00000023467lsm310097.059ENSSBOG00000024310LSM310097.059Saimiri_boliviensis_boliviensis
ENSPNAG00000023467lsm3100100.000ENSSFOG00015007071lsm3100100.000Scleropages_formosus
ENSPNAG00000023467lsm310098.039ENSSMAG00000001818lsm310098.039Scophthalmus_maximus
ENSPNAG00000023467lsm310098.039ENSSDUG00000006040lsm310098.039Seriola_dumerili
ENSPNAG00000023467lsm310098.039ENSSLDG00000006399lsm310098.039Seriola_lalandi_dorsalis
ENSPNAG00000023467lsm35798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSPNAG00000023467lsm39398.947ENSSPUG00000017047-9998.947Sphenodon_punctatus
ENSPNAG00000023467lsm310088.235ENSSPUG00000005394LSM310088.235Sphenodon_punctatus
ENSPNAG00000023467lsm310086.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSPNAG00000023467lsm39574.227ENSSSCG00000023718-9974.227Sus_scrofa
ENSPNAG00000023467lsm310097.059ENSSSCG00000011601LSM310097.059Sus_scrofa
ENSPNAG00000023467lsm310098.039ENSTGUG00000008327LSM310098.039Taeniopygia_guttata
ENSPNAG00000023467lsm310097.059ENSTRUG00000023175lsm310097.059Takifugu_rubripes
ENSPNAG00000023467lsm310097.059ENSTNIG00000005589lsm310097.059Tetraodon_nigroviridis
ENSPNAG00000023467lsm310087.255ENSTBEG00000001050-9987.255Tupaia_belangeri
ENSPNAG00000023467lsm310097.059ENSTTRG00000011197LSM310097.059Tursiops_truncatus
ENSPNAG00000023467lsm310097.059ENSUAMG00000017250-10097.059Ursus_americanus
ENSPNAG00000023467lsm310097.059ENSUMAG00000015905LSM310097.059Ursus_maritimus
ENSPNAG00000023467lsm39398.947ENSVPAG00000010709LSM310098.947Vicugna_pacos
ENSPNAG00000023467lsm310093.137ENSVVUG00000007332-9193.137Vulpes_vulpes
ENSPNAG00000023467lsm310092.157ENSVVUG00000006481-10092.157Vulpes_vulpes
ENSPNAG00000023467lsm310091.176ENSVVUG00000005684-10091.176Vulpes_vulpes
ENSPNAG00000023467lsm310093.137ENSVVUG00000029294-10093.137Vulpes_vulpes
ENSPNAG00000023467lsm310088.235ENSVVUG00000024228-10088.235Vulpes_vulpes
ENSPNAG00000023467lsm310097.059ENSXETG00000011534lsm310097.059Xenopus_tropicalis
ENSPNAG00000023467lsm310098.039ENSXCOG00000017432LSM310098.039Xiphophorus_couchianus
ENSPNAG00000023467lsm310098.039ENSXMAG00000009151lsm310098.039Xiphophorus_maculatus

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