EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000023531 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 111843 bases
Position: chrKV575793.1:34128-145970
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000033956	XRN_N	PF03159.18	2.8e-89	1	1
ENSPNAP00000016779	XRN_N	PF03159.18	2.8e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000025343	-	5031	-	ENSPNAP00000016779	1676 (aa)	-	-
ENSPNAT00000025333	-	4986	-	ENSPNAP00000033956	1661 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000023531's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000023531's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000023531	xrn1	99	60.472	ENSG00000114127	XRN1	96	94.175	Homo_sapiens
ENSPNAG00000023531	xrn1	95	77.571	ENSAPOG00000000622	xrn1	99	77.004	Acanthochromis_polyacanthus
ENSPNAG00000023531	xrn1	97	60.795	ENSAMEG00000012538	XRN1	99	60.161	Ailuropoda_melanoleuca
ENSPNAG00000023531	xrn1	95	76.101	ENSACIG00000001057	xrn1	98	75.775	Amphilophus_citrinellus
ENSPNAG00000023531	xrn1	100	70.133	ENSAOCG00000014097	xrn1	100	69.430	Amphiprion_ocellaris
ENSPNAG00000023531	xrn1	100	70.000	ENSAPEG00000006620	xrn1	98	72.099	Amphiprion_percula
ENSPNAG00000023531	xrn1	98	70.772	ENSATEG00000009752	xrn1	100	70.772	Anabas_testudineus
ENSPNAG00000023531	xrn1	98	60.554	ENSAPLG00000004905	XRN1	100	60.358	Anas_platyrhynchos
ENSPNAG00000023531	xrn1	99	66.789	ENSACAG00000004985	XRN1	99	66.789	Anolis_carolinensis
ENSPNAG00000023531	xrn1	97	61.401	ENSANAG00000029013	XRN1	99	71.743	Aotus_nancymaae
ENSPNAG00000023531	xrn1	100	68.852	ENSACLG00000004806	xrn1	99	68.910	Astatotilapia_calliptera
ENSPNAG00000023531	xrn1	100	81.721	ENSAMXG00000019370	xrn1	95	100.000	Astyanax_mexicanus
ENSPNAG00000023531	xrn1	99	60.115	ENSBTAG00000011524	XRN1	99	60.184	Bos_taurus
ENSPNAG00000023531	xrn1	71	37.604	WBGene00012730	xrn-1	80	37.528	Caenorhabditis_elegans
ENSPNAG00000023531	xrn1	96	61.387	ENSCJAG00000001872	XRN1	99	61.377	Callithrix_jacchus
ENSPNAG00000023531	xrn1	97	61.356	ENSCAFG00000007783	XRN1	99	60.472	Canis_familiaris
ENSPNAG00000023531	xrn1	97	61.273	ENSCAFG00020009120	XRN1	99	74.092	Canis_lupus_dingo
ENSPNAG00000023531	xrn1	99	60.485	ENSCHIG00000019192	XRN1	99	60.557	Capra_hircus
ENSPNAG00000023531	xrn1	99	60.288	ENSTSYG00000002705	XRN1	99	60.599	Carlito_syrichta
ENSPNAG00000023531	xrn1	50	78.440	ENSCAPG00000004604	-	95	78.440	Cavia_aperea
ENSPNAG00000023531	xrn1	99	60.461	ENSCCAG00000034800	XRN1	99	76.145	Cebus_capucinus
ENSPNAG00000023531	xrn1	96	62.191	ENSCATG00000041794	XRN1	99	60.794	Cercocebus_atys
ENSPNAG00000023531	xrn1	99	60.207	ENSCLAG00000001451	XRN1	99	76.619	Chinchilla_lanigera
ENSPNAG00000023531	xrn1	96	61.796	ENSCSAG00000011265	XRN1	99	60.424	Chlorocebus_sabaeus
ENSPNAG00000023531	xrn1	54	93.506	ENSCHOG00000013961	-	55	93.506	Choloepus_hoffmanni
ENSPNAG00000023531	xrn1	71	48.204	ENSCSAVG00000008584	-	94	48.152	Ciona_savignyi
ENSPNAG00000023531	xrn1	96	61.988	ENSCANG00000037495	XRN1	99	76.145	Colobus_angolensis_palliatus
ENSPNAG00000023531	xrn1	98	60.997	ENSCGRG00001019411	Xrn1	99	76.777	Cricetulus_griseus_chok1gshd
ENSPNAG00000023531	xrn1	98	60.997	ENSCGRG00000012464	Xrn1	99	76.777	Cricetulus_griseus_crigri
ENSPNAG00000023531	xrn1	100	62.073	ENSCSEG00000021285	xrn1	94	97.115	Cynoglossus_semilaevis
ENSPNAG00000023531	xrn1	68	74.273	ENSCVAG00000013089	xrn1	99	75.419	Cyprinodon_variegatus
ENSPNAG00000023531	xrn1	100	77.146	ENSDARG00000091652	xrn1	98	83.789	Danio_rerio
ENSPNAG00000023531	xrn1	99	60.194	ENSDORG00000013833	Xrn1	99	60.412	Dipodomys_ordii
ENSPNAG00000023531	xrn1	71	38.739	FBgn0020261	pcm	89	34.595	Drosophila_melanogaster
ENSPNAG00000023531	xrn1	85	74.775	ENSETEG00000003978	XRN1	86	75.806	Echinops_telfairi
ENSPNAG00000023531	xrn1	93	68.058	ENSEASG00005002687	XRN1	99	76.935	Equus_asinus_asinus
ENSPNAG00000023531	xrn1	97	61.625	ENSECAG00000008301	XRN1	99	60.802	Equus_caballus
ENSPNAG00000023531	xrn1	85	75.974	ENSEEUG00000011323	XRN1	84	76.316	Erinaceus_europaeus
ENSPNAG00000023531	xrn1	100	71.379	ENSELUG00000000169	xrn1	100	71.609	Esox_lucius
ENSPNAG00000023531	xrn1	97	57.278	ENSFCAG00000027589	XRN1	98	78.901	Felis_catus
ENSPNAG00000023531	xrn1	99	70.675	ENSFALG00000007021	XRN1	95	70.675	Ficedula_albicollis
ENSPNAG00000023531	xrn1	96	61.345	ENSFDAG00000020494	XRN1	99	76.303	Fukomys_damarensis
ENSPNAG00000023531	xrn1	90	71.581	ENSGMOG00000006396	xrn1	84	71.885	Gadus_morhua
ENSPNAG00000023531	xrn1	99	71.108	ENSGALG00000002706	XRN1	95	71.108	Gallus_gallus
ENSPNAG00000023531	xrn1	100	65.977	ENSGACG00000014328	xrn1	100	65.445	Gasterosteus_aculeatus
ENSPNAG00000023531	xrn1	95	62.081	ENSGAGG00000017535	XRN1	99	62.118	Gopherus_agassizii
ENSPNAG00000023531	xrn1	99	60.829	ENSGGOG00000008047	XRN1	99	60.887	Gorilla_gorilla
ENSPNAG00000023531	xrn1	100	68.548	ENSHBUG00000005908	xrn1	98	71.721	Haplochromis_burtoni
ENSPNAG00000023531	xrn1	99	60.330	ENSHGLG00000014476	XRN1	99	76.461	Heterocephalus_glaber_female
ENSPNAG00000023531	xrn1	99	60.330	ENSHGLG00100015130	XRN1	99	76.461	Heterocephalus_glaber_male
ENSPNAG00000023531	xrn1	96	74.023	ENSHCOG00000014062	xrn1	99	73.779	Hippocampus_comes
ENSPNAG00000023531	xrn1	100	77.133	ENSIPUG00000015229	xrn1	100	77.205	Ictalurus_punctatus
ENSPNAG00000023531	xrn1	97	60.986	ENSSTOG00000013552	XRN1	99	75.987	Ictidomys_tridecemlineatus
ENSPNAG00000023531	xrn1	98	59.534	ENSJJAG00000010863	Xrn1	99	75.658	Jaculus_jaculus
ENSPNAG00000023531	xrn1	99	66.843	ENSKMAG00000021356	xrn1	95	75.417	Kryptolebias_marmoratus
ENSPNAG00000023531	xrn1	100	67.979	ENSLBEG00000018656	xrn1	97	98.058	Labrus_bergylta
ENSPNAG00000023531	xrn1	99	62.372	ENSLACG00000009020	XRN1	99	62.828	Latimeria_chalumnae
ENSPNAG00000023531	xrn1	100	68.439	ENSLOCG00000007944	xrn1	100	68.325	Lepisosteus_oculatus
ENSPNAG00000023531	xrn1	64	71.256	ENSLAFG00000015426	XRN1	100	71.256	Loxodonta_africana
ENSPNAG00000023531	xrn1	96	62.048	ENSMFAG00000032599	XRN1	99	60.657	Macaca_fascicularis
ENSPNAG00000023531	xrn1	96	62.048	ENSMMUG00000014038	XRN1	99	60.657	Macaca_mulatta
ENSPNAG00000023531	xrn1	96	61.928	ENSMNEG00000034217	XRN1	99	60.541	Macaca_nemestrina
ENSPNAG00000023531	xrn1	95	75.504	ENSMAMG00000013219	xrn1	99	75.504	Mastacembelus_armatus
ENSPNAG00000023531	xrn1	100	68.968	ENSMZEG00005015099	xrn1	99	69.026	Maylandia_zebra
ENSPNAG00000023531	xrn1	98	59.514	ENSMGAG00000006333	XRN1	99	59.317	Meleagris_gallopavo
ENSPNAG00000023531	xrn1	99	60.103	ENSMICG00000048948	XRN1	96	94.175	Microcebus_murinus
ENSPNAG00000023531	xrn1	58	76.461	ENSMOCG00000008665	Xrn1	99	76.461	Microtus_ochrogaster
ENSPNAG00000023531	xrn1	99	60.355	ENSMODG00000021236	XRN1	99	60.444	Monodelphis_domestica
ENSPNAG00000023531	xrn1	100	65.667	ENSMALG00000004098	xrn1	100	66.061	Monopterus_albus
ENSPNAG00000023531	xrn1	99	56.936	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSPNAG00000023531	xrn1	99	60.922	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSPNAG00000023531	xrn1	99	60.729	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSPNAG00000023531	xrn1	99	60.970	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSPNAG00000023531	xrn1	97	61.629	ENSMPUG00000012040	XRN1	99	60.720	Mustela_putorius_furo
ENSPNAG00000023531	xrn1	99	59.469	ENSMLUG00000016885	XRN1	99	59.387	Myotis_lucifugus
ENSPNAG00000023531	xrn1	58	72.038	ENSNGAG00000023964	Xrn1	99	72.512	Nannospalax_galili
ENSPNAG00000023531	xrn1	96	62.048	ENSNLEG00000004726	XRN1	99	60.657	Nomascus_leucogenys
ENSPNAG00000023531	xrn1	70	94.845	ENSMEUG00000014473	-	70	95.146	Notamacropus_eugenii
ENSPNAG00000023531	xrn1	71	70.803	ENSOPRG00000007337	-	71	70.803	Ochotona_princeps
ENSPNAG00000023531	xrn1	100	67.874	ENSONIG00000016673	xrn1	99	71.776	Oreochromis_niloticus
ENSPNAG00000023531	xrn1	88	66.753	ENSOANG00000006735	XRN1	99	57.293	Ornithorhynchus_anatinus
ENSPNAG00000023531	xrn1	99	59.652	ENSOCUG00000001861	XRN1	99	59.843	Oryctolagus_cuniculus
ENSPNAG00000023531	xrn1	100	68.326	ENSORLG00000013005	xrn1	98	68.381	Oryzias_latipes
ENSPNAG00000023531	xrn1	100	68.073	ENSORLG00020005559	xrn1	100	68.206	Oryzias_latipes_hni
ENSPNAG00000023531	xrn1	100	67.974	ENSORLG00015022523	xrn1	100	67.876	Oryzias_latipes_hsok
ENSPNAG00000023531	xrn1	100	69.028	ENSOMEG00000015397	xrn1	99	76.124	Oryzias_melastigma
ENSPNAG00000023531	xrn1	99	58.477	ENSOGAG00000000170	XRN1	99	58.692	Otolemur_garnettii
ENSPNAG00000023531	xrn1	99	60.206	ENSOARG00000006343	XRN1	99	60.219	Ovis_aries
ENSPNAG00000023531	xrn1	99	60.807	ENSPPAG00000010180	XRN1	99	60.807	Pan_paniscus
ENSPNAG00000023531	xrn1	97	61.006	ENSPPRG00000007125	XRN1	99	60.599	Panthera_pardus
ENSPNAG00000023531	xrn1	97	61.006	ENSPTIG00000021081	XRN1	99	60.599	Panthera_tigris_altaica
ENSPNAG00000023531	xrn1	99	60.865	ENSPTRG00000015482	XRN1	99	60.865	Pan_troglodytes
ENSPNAG00000023531	xrn1	96	62.048	ENSPANG00000010638	XRN1	99	60.599	Papio_anubis
ENSPNAG00000023531	xrn1	100	59.413	ENSPSIG00000018050	XRN1	100	59.600	Pelodiscus_sinensis
ENSPNAG00000023531	xrn1	58	76.839	ENSPMGG00000002648	xrn1	99	76.839	Periophthalmus_magnuspinnatus
ENSPNAG00000023531	xrn1	58	76.619	ENSPEMG00000020610	Xrn1	99	76.619	Peromyscus_maniculatus_bairdii
ENSPNAG00000023531	xrn1	59	61.883	ENSPMAG00000002975	xrn1	78	75.287	Petromyzon_marinus
ENSPNAG00000023531	xrn1	91	72.060	ENSPCIG00000028735	XRN1	99	77.690	Phascolarctos_cinereus
ENSPNAG00000023531	xrn1	91	69.770	ENSPFOG00000013932	xrn1	99	70.026	Poecilia_formosa
ENSPNAG00000023531	xrn1	91	69.885	ENSPLAG00000021653	xrn1	99	70.141	Poecilia_latipinna
ENSPNAG00000023531	xrn1	89	70.426	ENSPMEG00000003076	xrn1	95	70.708	Poecilia_mexicana
ENSPNAG00000023531	xrn1	100	67.667	ENSPREG00000021147	xrn1	100	67.841	Poecilia_reticulata
ENSPNAG00000023531	xrn1	99	60.653	ENSPPYG00000014172	XRN1	99	60.710	Pongo_abelii
ENSPNAG00000023531	xrn1	84	78.000	ENSPCAG00000005638	XRN1	92	65.072	Procavia_capensis
ENSPNAG00000023531	xrn1	97	60.960	ENSPCOG00000013089	XRN1	99	75.829	Propithecus_coquereli
ENSPNAG00000023531	xrn1	87	68.421	ENSPVAG00000016265	XRN1	91	68.421	Pteropus_vampyrus
ENSPNAG00000023531	xrn1	100	69.217	ENSPNYG00000010570	xrn1	99	69.159	Pundamilia_nyererei
ENSPNAG00000023531	xrn1	99	60.253	ENSRNOG00000042951	Xrn1	99	60.195	Rattus_norvegicus
ENSPNAG00000023531	xrn1	96	61.608	ENSRBIG00000041227	XRN1	99	60.241	Rhinopithecus_bieti
ENSPNAG00000023531	xrn1	70	33.829	YGL173C	XRN1	73	51.351	Saccharomyces_cerevisiae
ENSPNAG00000023531	xrn1	97	61.442	ENSSBOG00000029561	XRN1	99	60.519	Saimiri_boliviensis_boliviensis
ENSPNAG00000023531	xrn1	98	60.233	ENSSHAG00000016207	XRN1	99	60.349	Sarcophilus_harrisii
ENSPNAG00000023531	xrn1	100	69.589	ENSSFOG00015024211	xrn1	100	69.708	Scleropages_formosus
ENSPNAG00000023531	xrn1	100	68.609	ENSSMAG00000016534	xrn1	100	68.649	Scophthalmus_maximus
ENSPNAG00000023531	xrn1	90	77.732	ENSSDUG00000010306	xrn1	97	77.669	Seriola_dumerili
ENSPNAG00000023531	xrn1	95	75.873	ENSSLDG00000021543	xrn1	99	75.814	Seriola_lalandi_dorsalis
ENSPNAG00000023531	xrn1	66	63.673	ENSSARG00000007741	-	75	64.592	Sorex_araneus
ENSPNAG00000023531	xrn1	100	61.287	ENSTGUG00000008498	XRN1	100	61.092	Taeniopygia_guttata
ENSPNAG00000023531	xrn1	100	64.180	ENSTRUG00000004895	xrn1	96	76.250	Takifugu_rubripes
ENSPNAG00000023531	xrn1	100	63.173	ENSTNIG00000017615	xrn1	100	63.218	Tetraodon_nigroviridis
ENSPNAG00000023531	xrn1	72	81.551	ENSTBEG00000003256	XRN1	73	80.818	Tupaia_belangeri
ENSPNAG00000023531	xrn1	99	56.562	ENSTTRG00000012914	XRN1	99	56.716	Tursiops_truncatus
ENSPNAG00000023531	xrn1	97	59.728	ENSUAMG00000001608	XRN1	99	72.512	Ursus_americanus
ENSPNAG00000023531	xrn1	97	61.206	ENSUMAG00000013625	XRN1	99	60.629	Ursus_maritimus
ENSPNAG00000023531	xrn1	97	58.377	ENSVPAG00000004690	XRN1	99	58.042	Vicugna_pacos
ENSPNAG00000023531	xrn1	97	61.177	ENSVVUG00000024461	XRN1	99	76.303	Vulpes_vulpes
ENSPNAG00000023531	xrn1	100	59.886	ENSXETG00000000619	xrn1	97	82.353	Xenopus_tropicalis
ENSPNAG00000023531	xrn1	100	66.199	ENSXCOG00000007917	xrn1	100	66.064	Xiphophorus_couchianus
ENSPNAG00000023531	xrn1	92	74.877	ENSXMAG00000018320	xrn1	98	75.205	Xiphophorus_maculatus