EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000024098 (Gene tree)
Gene ID: 108411526
Gene Symbol: CPSF6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 8331 bases
Position: chrKV576089.1:84180-92510
Accession: 108411526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000034660	RRM_1	PF00076.22	6.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000026747	CPSF6-201	2052	XM_017683144	ENSPNAP00000034660	548 (aa)	XP_017538633	UPI00081458B2

Gene Model

Click here to download ENSPNAG00000024098's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000024098's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000024098	CPSF6	64	42.188	ENSPNAG00000015073	CPSF7	69	47.273

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000024098	CPSF6	95	39.411	ENSG00000149532	CPSF7	100	50.000	Homo_sapiens
ENSPNAG00000024098	CPSF6	82	83.420	ENSG00000111605	CPSF6	88	78.723	Homo_sapiens
ENSPNAG00000024098	CPSF6	52	79.649	ENSAMEG00000011781	CPSF6	52	80.000	Ailuropoda_melanoleuca
ENSPNAG00000024098	CPSF6	52	79.225	ENSACAG00000004381	CPSF6	52	79.225	Anolis_carolinensis
ENSPNAG00000024098	CPSF6	100	72.628	ENSAMXG00000016745	CPSF6	100	74.818	Astyanax_mexicanus
ENSPNAG00000024098	CPSF6	52	79.577	ENSBTAG00000007323	CPSF6	51	79.930	Bos_taurus
ENSPNAG00000024098	CPSF6	78	82.558	ENSCJAG00000001798	CPSF6	51	79.930	Callithrix_jacchus
ENSPNAG00000024098	CPSF6	95	39.411	ENSCJAG00000019282	CPSF7	80	59.211	Callithrix_jacchus
ENSPNAG00000024098	CPSF6	75	79.618	ENSCAFG00000000424	CPSF6	83	80.347	Canis_familiaris
ENSPNAG00000024098	CPSF6	52	79.577	ENSCAFG00020016950	CPSF6	51	79.930	Canis_lupus_dingo
ENSPNAG00000024098	CPSF6	52	79.577	ENSCHIG00000010792	CPSF6	51	79.930	Capra_hircus
ENSPNAG00000024098	CPSF6	75	82.558	ENSTSYG00000008591	CPSF6	63	92.216	Carlito_syrichta
ENSPNAG00000024098	CPSF6	52	79.577	ENSCPOG00000015201	CPSF6	51	79.930	Cavia_porcellus
ENSPNAG00000024098	CPSF6	62	92.121	ENSCCAG00000028149	CPSF6	51	79.930	Cebus_capucinus
ENSPNAG00000024098	CPSF6	65	92.121	ENSCATG00000039288	CPSF6	51	79.930	Cercocebus_atys
ENSPNAG00000024098	CPSF6	52	79.225	ENSCPBG00000013322	CPSF6	51	79.577	Chrysemys_picta_bellii
ENSPNAG00000024098	CPSF6	52	79.577	ENSCGRG00001018082	Cpsf6	51	79.930	Cricetulus_griseus_chok1gshd
ENSPNAG00000024098	CPSF6	50	75.627	ENSCGRG00000016909	Cpsf6	50	75.986	Cricetulus_griseus_crigri
ENSPNAG00000024098	CPSF6	62	35.385	ENSCSEG00000001956	CPSF7	68	46.099	Cynoglossus_semilaevis
ENSPNAG00000024098	CPSF6	94	91.154	ENSCSEG00000008967	cpsf6	95	91.939	Cynoglossus_semilaevis
ENSPNAG00000024098	CPSF6	94	87.500	ENSCVAG00000014857	cpsf6	52	85.965	Cyprinodon_variegatus
ENSPNAG00000024098	CPSF6	67	37.264	ENSCVAG00000007392	CPSF7	66	44.828	Cyprinodon_variegatus
ENSPNAG00000024098	CPSF6	52	85.614	ENSDARG00000018618	cpsf6	52	87.368	Danio_rerio
ENSPNAG00000024098	CPSF6	52	79.930	ENSDNOG00000015292	CPSF6	51	80.282	Dasypus_novemcinctus
ENSPNAG00000024098	CPSF6	95	39.595	ENSDNOG00000018517	CPSF7	80	59.868	Dasypus_novemcinctus
ENSPNAG00000024098	CPSF6	52	79.577	ENSEASG00005008066	CPSF6	51	79.930	Equus_asinus_asinus
ENSPNAG00000024098	CPSF6	52	79.577	ENSECAG00000015988	CPSF6	51	79.930	Equus_caballus
ENSPNAG00000024098	CPSF6	72	62.385	ENSECAG00000018521	CPSF7	82	59.868	Equus_caballus
ENSPNAG00000024098	CPSF6	95	39.595	ENSFCAG00000013677	CPSF7	82	59.868	Felis_catus
ENSPNAG00000024098	CPSF6	52	79.577	ENSFCAG00000002855	CPSF6	51	79.930	Felis_catus
ENSPNAG00000024098	CPSF6	64	55.676	ENSFALG00000011927	CPSF7	76	57.803	Ficedula_albicollis
ENSPNAG00000024098	CPSF6	51	74.823	ENSFDAG00000002281	CPSF6	51	75.177	Fukomys_damarensis
ENSPNAG00000024098	CPSF6	52	82.000	ENSFHEG00000019693	cpsf6	54	77.885	Fundulus_heteroclitus
ENSPNAG00000024098	CPSF6	54	91.908	ENSGMOG00000012951	cpsf6	54	94.262	Gadus_morhua
ENSPNAG00000024098	CPSF6	52	79.225	ENSGAGG00000010228	CPSF6	51	79.577	Gopherus_agassizii
ENSPNAG00000024098	CPSF6	65	92.121	ENSGGOG00000008211	CPSF6	51	79.930	Gorilla_gorilla
ENSPNAG00000024098	CPSF6	52	79.577	ENSHGLG00000000792	CPSF6	51	79.930	Heterocephalus_glaber_female
ENSPNAG00000024098	CPSF6	68	50.262	ENSHGLG00100013933	-	74	57.803	Heterocephalus_glaber_male
ENSPNAG00000024098	CPSF6	51	74.558	ENSHGLG00100013861	CPSF6	51	74.912	Heterocephalus_glaber_male
ENSPNAG00000024098	CPSF6	56	40.845	ENSLBEG00000000947	CPSF7	66	39.766	Labrus_bergylta
ENSPNAG00000024098	CPSF6	62	43.038	ENSLACG00000005542	CPSF7	70	43.038	Latimeria_chalumnae
ENSPNAG00000024098	CPSF6	52	79.225	ENSLACG00000008625	CPSF6	51	79.225	Latimeria_chalumnae
ENSPNAG00000024098	CPSF6	66	93.976	ENSLOCG00000016190	cpsf6	68	94.012	Lepisosteus_oculatus
ENSPNAG00000024098	CPSF6	68	82.659	ENSLAFG00000030413	CPSF6	83	79.121	Loxodonta_africana
ENSPNAG00000024098	CPSF6	65	92.121	ENSMFAG00000045318	CPSF6	51	79.930	Macaca_fascicularis
ENSPNAG00000024098	CPSF6	63	92.121	ENSMMUG00000002921	CPSF6	51	79.930	Macaca_mulatta
ENSPNAG00000024098	CPSF6	82	82.625	ENSMNEG00000036311	CPSF6	51	79.930	Macaca_nemestrina
ENSPNAG00000024098	CPSF6	95	41.591	ENSMGAG00000004876	CPSF7	62	60.947	Meleagris_gallopavo
ENSPNAG00000024098	CPSF6	51	74.733	ENSMGAG00000010552	CPSF6	52	74.729	Meleagris_gallopavo
ENSPNAG00000024098	CPSF6	52	79.577	ENSMAUG00000013240	Cpsf6	51	79.930	Mesocricetus_auratus
ENSPNAG00000024098	CPSF6	82	82.625	ENSMICG00000007385	-	51	79.930	Microcebus_murinus
ENSPNAG00000024098	CPSF6	52	79.577	ENSMOCG00000013982	Cpsf6	51	79.930	Microtus_ochrogaster
ENSPNAG00000024098	CPSF6	52	79.577	ENSMODG00000007123	CPSF6	51	79.930	Monodelphis_domestica
ENSPNAG00000024098	CPSF6	75	92.268	ENSMALG00000014908	cpsf6	78	92.857	Monopterus_albus
ENSPNAG00000024098	CPSF6	52	79.577	MGP_CAROLIEiJ_G0015834	Cpsf6	51	79.930	Mus_caroli
ENSPNAG00000024098	CPSF6	52	79.577	ENSMUSG00000055531	Cpsf6	51	79.930	Mus_musculus
ENSPNAG00000024098	CPSF6	52	79.577	MGP_PahariEiJ_G0031253	Cpsf6	56	79.930	Mus_pahari
ENSPNAG00000024098	CPSF6	52	79.577	MGP_SPRETEiJ_G0016657	Cpsf6	51	79.930	Mus_spretus
ENSPNAG00000024098	CPSF6	51	75.445	ENSMLUG00000004172	-	52	75.801	Myotis_lucifugus
ENSPNAG00000024098	CPSF6	70	87.770	ENSMLUG00000028728	-	91	84.932	Myotis_lucifugus
ENSPNAG00000024098	CPSF6	65	77.457	ENSMLUG00000023960	-	82	75.556	Myotis_lucifugus
ENSPNAG00000024098	CPSF6	52	79.577	ENSNGAG00000015901	Cpsf6	51	79.930	Nannospalax_galili
ENSPNAG00000024098	CPSF6	82	82.625	ENSNLEG00000003798	CPSF6	51	79.930	Nomascus_leucogenys
ENSPNAG00000024098	CPSF6	79	64.238	ENSODEG00000007109	-	74	63.522	Octodon_degus
ENSPNAG00000024098	CPSF6	52	78.873	ENSODEG00000018399	-	51	79.225	Octodon_degus
ENSPNAG00000024098	CPSF6	87	49.462	ENSOCUG00000024726	CPSF7	65	57.803	Oryctolagus_cuniculus
ENSPNAG00000024098	CPSF6	70	35.950	ENSORLG00000006495	CPSF7	65	38.462	Oryzias_latipes
ENSPNAG00000024098	CPSF6	70	35.950	ENSORLG00020012657	CPSF7	65	38.462	Oryzias_latipes_hni
ENSPNAG00000024098	CPSF6	70	35.950	ENSORLG00015011091	CPSF7	65	38.462	Oryzias_latipes_hsok
ENSPNAG00000024098	CPSF6	94	87.023	ENSOMEG00000009425	cpsf6	52	82.292	Oryzias_melastigma
ENSPNAG00000024098	CPSF6	95	36.538	ENSOARG00000012937	CPSF7	65	57.803	Ovis_aries
ENSPNAG00000024098	CPSF6	95	39.813	ENSPPRG00000008538	CPSF7	72	58.382	Panthera_pardus
ENSPNAG00000024098	CPSF6	52	79.577	ENSPPRG00000021620	CPSF6	51	79.930	Panthera_pardus
ENSPNAG00000024098	CPSF6	65	92.121	ENSPTRG00000005205	CPSF6	51	79.930	Pan_troglodytes
ENSPNAG00000024098	CPSF6	74	94.262	ENSPANG00000011641	CPSF6	70	81.818	Papio_anubis
ENSPNAG00000024098	CPSF6	61	47.159	ENSPKIG00000018054	CPSF7	76	44.681	Paramormyrops_kingsleyae
ENSPNAG00000024098	CPSF6	52	89.474	ENSPKIG00000022613	CPSF6	52	89.474	Paramormyrops_kingsleyae
ENSPNAG00000024098	CPSF6	52	83.451	ENSPKIG00000003081	-	52	85.915	Paramormyrops_kingsleyae
ENSPNAG00000024098	CPSF6	50	43.103	ENSPMAG00000008077	-	68	49.733	Petromyzon_marinus
ENSPNAG00000024098	CPSF6	65	49.721	ENSPCIG00000002551	CPSF7	70	70.588	Phascolarctos_cinereus
ENSPNAG00000024098	CPSF6	52	79.577	ENSPCIG00000019063	CPSF6	51	79.930	Phascolarctos_cinereus
ENSPNAG00000024098	CPSF6	94	89.423	ENSPLAG00000005715	cpsf6	52	88.772	Poecilia_latipinna
ENSPNAG00000024098	CPSF6	94	89.423	ENSPMEG00000001353	cpsf6	52	88.772	Poecilia_mexicana
ENSPNAG00000024098	CPSF6	94	87.115	ENSPREG00000004417	cpsf6	52	88.772	Poecilia_reticulata
ENSPNAG00000024098	CPSF6	52	79.577	ENSPPYG00000004756	CPSF6	51	79.930	Pongo_abelii
ENSPNAG00000024098	CPSF6	62	91.515	ENSPCOG00000024384	CPSF6	51	79.930	Propithecus_coquereli
ENSPNAG00000024098	CPSF6	52	79.930	ENSRNOG00000005927	Cpsf6	51	80.282	Rattus_norvegicus
ENSPNAG00000024098	CPSF6	95	39.411	ENSRBIG00000031429	CPSF7	82	59.211	Rhinopithecus_bieti
ENSPNAG00000024098	CPSF6	65	92.121	ENSRBIG00000042827	CPSF6	51	79.930	Rhinopithecus_bieti
ENSPNAG00000024098	CPSF6	82	82.625	ENSRROG00000042758	CPSF6	51	79.930	Rhinopithecus_roxellana
ENSPNAG00000024098	CPSF6	52	82.517	ENSSFOG00015015803	CPSF6	51	82.042	Scleropages_formosus
ENSPNAG00000024098	CPSF6	66	41.143	ENSSFOG00015010288	cpsf7	73	41.143	Scleropages_formosus
ENSPNAG00000024098	CPSF6	85	83.858	ENSSARG00000006743	CPSF6	82	83.858	Sorex_araneus
ENSPNAG00000024098	CPSF6	65	51.042	ENSSPUG00000019344	CPSF7	73	57.803	Sphenodon_punctatus
ENSPNAG00000024098	CPSF6	95	39.595	ENSSSCG00000013083	CPSF7	80	59.868	Sus_scrofa
ENSPNAG00000024098	CPSF6	52	79.577	ENSSSCG00000038031	CPSF6	51	79.930	Sus_scrofa
ENSPNAG00000024098	CPSF6	63	54.190	ENSTGUG00000006513	CPSF7	69	48.045	Taeniopygia_guttata
ENSPNAG00000024098	CPSF6	94	87.669	ENSTRUG00000016461	cpsf6	54	85.570	Takifugu_rubripes
ENSPNAG00000024098	CPSF6	94	88.632	ENSTNIG00000007576	cpsf6	95	88.846	Tetraodon_nigroviridis
ENSPNAG00000024098	CPSF6	79	50.000	ENSVVUG00000004939	CPSF7	80	59.868	Vulpes_vulpes
ENSPNAG00000024098	CPSF6	97	41.728	ENSXETG00000006715	cpsf7	54	46.927	Xenopus_tropicalis
ENSPNAG00000024098	CPSF6	94	89.038	ENSXCOG00000013423	cpsf6	52	88.772	Xiphophorus_couchianus