EuRBPDB

Description

Ensembl ID: ENSPNAG00000024569 (Gene tree)
Gene ID: 108427200
Gene Symbol: cirbpa
Alias: wu:fb12a12|wu:fb16h02|wu:fb55a06|wu:fc67h01|wu:fj10g10|zgc:109887|zgc:112425
Full Name: cold-inducible RNA-binding protein B-like
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 3238 bases
Position: chrKV575334.1:2452952-2456189
Accession: 108427200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000018224	RRM_1	PF00076.22	1.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000027323	-	863	XM_017697181	ENSPNAP00000018224	177 (aa)	XP_017552670	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000024569	cirbpa	55	36.735	ENSPNAG00000012262	srsf3a	56	38.158
ENSPNAG00000024569	cirbpa	85	36.111	ENSPNAG00000024381	elavl1b	67	36.111
ENSPNAG00000024569	cirbpa	50	38.889	ENSPNAG00000003633	elavl3	63	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000024569	cirbpa	56	71.000	ENSHCOG00000001170	cirbpa	83	71.000	Hippocampus_comes
ENSPNAG00000024569	cirbpa	100	54.497	ENSLBEG00000000292	cirbpa	50	65.432	Labrus_bergylta
ENSPNAG00000024569	cirbpa	100	56.742	ENSSPAG00000023037	cirbpa	50	72.840	Stegastes_partitus
ENSPNAG00000024569	cirbpa	100	57.692	ENSTRUG00000010187	cirbpa	60	72.840	Takifugu_rubripes
ENSPNAG00000024569	cirbpa	98	56.842	ENSXCOG00000008262	cirbpa	92	67.123	Xiphophorus_couchianus