EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000025285 (Gene tree)
Gene ID: 108433942
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 5784 bases
Position: chrKV575431.1:949828-955611
Accession: 108433942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000035379	TUDOR	PF00567.24	6.2e-06	1	1
ENSPNAP00000035379	SMN	PF06003.12	5.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000039150	-	859	XM_017708825	ENSPNAP00000035379	237 (aa)	XP_017564314	UPI0008142699

Gene Model

Click here to download ENSPNAG00000025285's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000025285's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000025285	smndc1	100	76.891	ENSG00000119953	SMNDC1	100	76.891	Homo_sapiens
ENSPNAG00000025285	smndc1	100	80.672	ENSAPOG00000021772	smndc1	100	80.672	Acanthochromis_polyacanthus
ENSPNAG00000025285	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSPNAG00000025285	smndc1	100	81.092	ENSACIG00000004819	smndc1	100	81.092	Amphilophus_citrinellus
ENSPNAG00000025285	smndc1	100	79.412	ENSAOCG00000017869	smndc1	100	79.412	Amphiprion_ocellaris
ENSPNAG00000025285	smndc1	100	79.412	ENSAPEG00000007752	smndc1	100	79.412	Amphiprion_percula
ENSPNAG00000025285	smndc1	100	81.513	ENSATEG00000006830	smndc1	100	81.513	Anabas_testudineus
ENSPNAG00000025285	smndc1	83	77.273	ENSAPLG00000004322	SMNDC1	100	77.273	Anas_platyrhynchos
ENSPNAG00000025285	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSPNAG00000025285	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSPNAG00000025285	smndc1	100	81.092	ENSACLG00000016360	smndc1	100	81.092	Astatotilapia_calliptera
ENSPNAG00000025285	smndc1	100	90.295	ENSAMXG00000020310	smndc1	100	90.295	Astyanax_mexicanus
ENSPNAG00000025285	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSPNAG00000025285	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSPNAG00000025285	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSPNAG00000025285	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSPNAG00000025285	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSPNAG00000025285	smndc1	100	76.891	ENSTSYG00000026454	SMNDC1	100	76.891	Carlito_syrichta
ENSPNAG00000025285	smndc1	100	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSPNAG00000025285	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSPNAG00000025285	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSPNAG00000025285	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSPNAG00000025285	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSPNAG00000025285	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSPNAG00000025285	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSPNAG00000025285	smndc1	100	77.311	ENSCPBG00000012837	SMNDC1	100	77.311	Chrysemys_picta_bellii
ENSPNAG00000025285	smndc1	100	70.588	ENSCANG00000034620	-	100	70.588	Colobus_angolensis_palliatus
ENSPNAG00000025285	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSPNAG00000025285	smndc1	100	60.338	ENSCANG00000036994	-	100	60.338	Colobus_angolensis_palliatus
ENSPNAG00000025285	smndc1	100	76.050	ENSCGRG00001012973	Smndc1	100	76.050	Cricetulus_griseus_chok1gshd
ENSPNAG00000025285	smndc1	100	76.050	ENSCGRG00000012396	Smndc1	100	76.050	Cricetulus_griseus_crigri
ENSPNAG00000025285	smndc1	100	79.747	ENSCSEG00000015621	smndc1	100	79.747	Cynoglossus_semilaevis
ENSPNAG00000025285	smndc1	100	78.571	ENSCVAG00000020432	smndc1	100	78.571	Cyprinodon_variegatus
ENSPNAG00000025285	smndc1	100	82.278	ENSDARG00000056235	smndc1	100	82.278	Danio_rerio
ENSPNAG00000025285	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSPNAG00000025285	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSPNAG00000025285	smndc1	95	40.323	FBgn0039977	CG17454	98	41.935	Drosophila_melanogaster
ENSPNAG00000025285	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	68.465	Eptatretus_burgeri
ENSPNAG00000025285	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSPNAG00000025285	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSPNAG00000025285	smndc1	83	55.556	ENSEEUG00000013407	-	100	55.556	Erinaceus_europaeus
ENSPNAG00000025285	smndc1	100	85.232	ENSELUG00000000227	smndc1	100	85.232	Esox_lucius
ENSPNAG00000025285	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSPNAG00000025285	smndc1	100	77.731	ENSFALG00000002306	SMNDC1	100	77.731	Ficedula_albicollis
ENSPNAG00000025285	smndc1	100	76.471	ENSFDAG00000006468	SMNDC1	100	76.471	Fukomys_damarensis
ENSPNAG00000025285	smndc1	100	79.832	ENSFHEG00000020150	smndc1	100	79.832	Fundulus_heteroclitus
ENSPNAG00000025285	smndc1	100	80.169	ENSGMOG00000016585	smndc1	100	80.169	Gadus_morhua
ENSPNAG00000025285	smndc1	100	77.731	ENSGALG00000008561	SMNDC1	100	77.731	Gallus_gallus
ENSPNAG00000025285	smndc1	100	78.151	ENSGAFG00000011582	smndc1	100	78.151	Gambusia_affinis
ENSPNAG00000025285	smndc1	100	80.672	ENSGACG00000009468	smndc1	100	80.672	Gasterosteus_aculeatus
ENSPNAG00000025285	smndc1	100	77.311	ENSGAGG00000024547	SMNDC1	100	77.311	Gopherus_agassizii
ENSPNAG00000025285	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSPNAG00000025285	smndc1	100	81.092	ENSHBUG00000017596	smndc1	100	81.092	Haplochromis_burtoni
ENSPNAG00000025285	smndc1	100	55.556	ENSHGLG00000001157	-	100	54.733	Heterocephalus_glaber_female
ENSPNAG00000025285	smndc1	100	76.471	ENSHGLG00000013390	-	100	76.471	Heterocephalus_glaber_female
ENSPNAG00000025285	smndc1	100	76.471	ENSHGLG00100004814	-	100	76.471	Heterocephalus_glaber_male
ENSPNAG00000025285	smndc1	100	61.728	ENSHGLG00100004278	-	100	60.729	Heterocephalus_glaber_male
ENSPNAG00000025285	smndc1	100	75.732	ENSHCOG00000000783	smndc1	100	75.732	Hippocampus_comes
ENSPNAG00000025285	smndc1	100	88.186	ENSIPUG00000004217	smndc1	100	88.186	Ictalurus_punctatus
ENSPNAG00000025285	smndc1	100	76.891	ENSSTOG00000006088	SMNDC1	100	76.891	Ictidomys_tridecemlineatus
ENSPNAG00000025285	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSPNAG00000025285	smndc1	100	80.252	ENSKMAG00000020134	smndc1	100	80.252	Kryptolebias_marmoratus
ENSPNAG00000025285	smndc1	100	78.903	ENSLBEG00000004598	smndc1	100	78.903	Labrus_bergylta
ENSPNAG00000025285	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSPNAG00000025285	smndc1	100	81.013	ENSLOCG00000012355	smndc1	100	81.013	Lepisosteus_oculatus
ENSPNAG00000025285	smndc1	100	76.891	ENSLAFG00000014353	SMNDC1	100	76.891	Loxodonta_africana
ENSPNAG00000025285	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSPNAG00000025285	smndc1	100	63.291	ENSMFAG00000038381	-	100	63.291	Macaca_fascicularis
ENSPNAG00000025285	smndc1	100	63.291	ENSMMUG00000045875	-	100	63.291	Macaca_mulatta
ENSPNAG00000025285	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSPNAG00000025285	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSPNAG00000025285	smndc1	100	67.227	ENSMNEG00000033853	-	100	67.227	Macaca_nemestrina
ENSPNAG00000025285	smndc1	100	72.385	ENSMLEG00000040236	SMNDC1	100	71.967	Mandrillus_leucophaeus
ENSPNAG00000025285	smndc1	89	76.995	ENSMAMG00000018233	smndc1	87	76.995	Mastacembelus_armatus
ENSPNAG00000025285	smndc1	100	81.092	ENSMZEG00005027510	smndc1	100	81.092	Maylandia_zebra
ENSPNAG00000025285	smndc1	99	69.620	ENSMGAG00000010777	SMNDC1	99	69.620	Meleagris_gallopavo
ENSPNAG00000025285	smndc1	99	63.559	ENSMAUG00000005459	-	93	64.557	Mesocricetus_auratus
ENSPNAG00000025285	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSPNAG00000025285	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSPNAG00000025285	smndc1	100	66.667	ENSMICG00000031640	-	100	66.667	Microcebus_murinus
ENSPNAG00000025285	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSPNAG00000025285	smndc1	100	78.992	ENSMMOG00000008856	smndc1	100	78.992	Mola_mola
ENSPNAG00000025285	smndc1	100	77.311	ENSMODG00000010542	SMNDC1	100	77.311	Monodelphis_domestica
ENSPNAG00000025285	smndc1	100	80.252	ENSMALG00000017598	smndc1	100	80.252	Monopterus_albus
ENSPNAG00000025285	smndc1	100	76.050	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.050	Mus_caroli
ENSPNAG00000025285	smndc1	100	76.471	ENSMUSG00000025024	Smndc1	100	76.471	Mus_musculus
ENSPNAG00000025285	smndc1	100	76.891	MGP_PahariEiJ_G0014560	Smndc1	100	76.891	Mus_pahari
ENSPNAG00000025285	smndc1	100	76.471	MGP_SPRETEiJ_G0023993	Smndc1	100	76.471	Mus_spretus
ENSPNAG00000025285	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSPNAG00000025285	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSPNAG00000025285	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSPNAG00000025285	smndc1	100	81.092	ENSNBRG00000017089	smndc1	100	81.092	Neolamprologus_brichardi
ENSPNAG00000025285	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSPNAG00000025285	smndc1	70	61.446	ENSMEUG00000010120	-	99	55.941	Notamacropus_eugenii
ENSPNAG00000025285	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSPNAG00000025285	smndc1	100	54.852	ENSODEG00000007594	-	100	52.743	Octodon_degus
ENSPNAG00000025285	smndc1	100	81.092	ENSONIG00000000434	smndc1	100	81.092	Oreochromis_niloticus
ENSPNAG00000025285	smndc1	100	77.311	ENSOANG00000001598	SMNDC1	100	77.311	Ornithorhynchus_anatinus
ENSPNAG00000025285	smndc1	100	55.462	ENSOCUG00000012274	-	100	58.403	Oryctolagus_cuniculus
ENSPNAG00000025285	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSPNAG00000025285	smndc1	100	78.151	ENSORLG00000005934	smndc1	95	78.151	Oryzias_latipes
ENSPNAG00000025285	smndc1	100	78.151	ENSORLG00020008796	smndc1	95	78.151	Oryzias_latipes_hni
ENSPNAG00000025285	smndc1	100	78.151	ENSORLG00015013666	smndc1	100	78.151	Oryzias_latipes_hsok
ENSPNAG00000025285	smndc1	100	78.903	ENSOMEG00000007590	smndc1	100	78.903	Oryzias_melastigma
ENSPNAG00000025285	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSPNAG00000025285	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSPNAG00000025285	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSPNAG00000025285	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSPNAG00000025285	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSPNAG00000025285	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSPNAG00000025285	smndc1	100	72.574	ENSPANG00000031346	-	100	72.574	Papio_anubis
ENSPNAG00000025285	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSPNAG00000025285	smndc1	100	79.325	ENSPKIG00000017164	smndc1	100	80.753	Paramormyrops_kingsleyae
ENSPNAG00000025285	smndc1	100	77.731	ENSPSIG00000012257	SMNDC1	100	77.731	Pelodiscus_sinensis
ENSPNAG00000025285	smndc1	100	78.481	ENSPMGG00000015651	smndc1	100	78.481	Periophthalmus_magnuspinnatus
ENSPNAG00000025285	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSPNAG00000025285	smndc1	100	66.803	ENSPMAG00000007705	smndc1	100	66.803	Petromyzon_marinus
ENSPNAG00000025285	smndc1	100	77.311	ENSPCIG00000018419	SMNDC1	100	77.311	Phascolarctos_cinereus
ENSPNAG00000025285	smndc1	95	58.222	ENSPCIG00000009693	-	98	58.222	Phascolarctos_cinereus
ENSPNAG00000025285	smndc1	100	78.571	ENSPFOG00000017113	smndc1	100	78.571	Poecilia_formosa
ENSPNAG00000025285	smndc1	100	78.571	ENSPLAG00000010372	smndc1	100	78.571	Poecilia_latipinna
ENSPNAG00000025285	smndc1	100	78.992	ENSPMEG00000012288	smndc1	100	78.992	Poecilia_mexicana
ENSPNAG00000025285	smndc1	100	78.151	ENSPREG00000012279	smndc1	100	78.151	Poecilia_reticulata
ENSPNAG00000025285	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSPNAG00000025285	smndc1	81	73.057	ENSPCAG00000016183	SMNDC1	100	73.057	Procavia_capensis
ENSPNAG00000025285	smndc1	100	76.471	ENSPCOG00000024343	SMNDC1	100	76.471	Propithecus_coquereli
ENSPNAG00000025285	smndc1	100	60.924	ENSPVAG00000004368	SMNDC1	100	60.924	Pteropus_vampyrus
ENSPNAG00000025285	smndc1	83	79.798	ENSPNYG00000024093	smndc1	86	79.798	Pundamilia_nyererei
ENSPNAG00000025285	smndc1	100	76.050	ENSRNOG00000014833	Smndc1	100	76.050	Rattus_norvegicus
ENSPNAG00000025285	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSPNAG00000025285	smndc1	100	62.025	ENSRBIG00000032452	-	100	62.025	Rhinopithecus_bieti
ENSPNAG00000025285	smndc1	100	62.447	ENSRROG00000039125	-	100	62.447	Rhinopithecus_roxellana
ENSPNAG00000025285	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSPNAG00000025285	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSPNAG00000025285	smndc1	100	77.311	ENSSHAG00000015189	SMNDC1	100	77.311	Sarcophilus_harrisii
ENSPNAG00000025285	smndc1	100	79.325	ENSSFOG00015008311	smndc1	100	79.325	Scleropages_formosus
ENSPNAG00000025285	smndc1	100	80.252	ENSSMAG00000020118	smndc1	100	80.252	Scophthalmus_maximus
ENSPNAG00000025285	smndc1	100	82.773	ENSSDUG00000015330	smndc1	100	82.773	Seriola_dumerili
ENSPNAG00000025285	smndc1	100	82.773	ENSSLDG00000017325	smndc1	100	82.773	Seriola_lalandi_dorsalis
ENSPNAG00000025285	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSPNAG00000025285	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSPNAG00000025285	smndc1	100	81.092	ENSSPAG00000000338	smndc1	100	81.092	Stegastes_partitus
ENSPNAG00000025285	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSPNAG00000025285	smndc1	100	77.731	ENSTGUG00000010599	SMNDC1	100	77.731	Taeniopygia_guttata
ENSPNAG00000025285	smndc1	100	75.630	ENSTRUG00000023281	smndc1	100	75.630	Takifugu_rubripes
ENSPNAG00000025285	smndc1	100	75.630	ENSTNIG00000013331	smndc1	100	75.630	Tetraodon_nigroviridis
ENSPNAG00000025285	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSPNAG00000025285	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSPNAG00000025285	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSPNAG00000025285	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSPNAG00000025285	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSPNAG00000025285	smndc1	59	65.493	ENSXETG00000015415	SMNDC1	100	65.493	Xenopus_tropicalis
ENSPNAG00000025285	smndc1	100	78.903	ENSXCOG00000009159	smndc1	100	78.903	Xiphophorus_couchianus
ENSPNAG00000025285	smndc1	100	78.571	ENSXMAG00000012755	smndc1	100	78.571	Xiphophorus_maculatus