EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000025614 (Gene tree)
Gene ID: 108427177
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 23239 bases
Position: chrKV575334.1:1765752-1788990
Accession: 108427177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000019041	UPF1_Zn_bind	PF09416.10	8.5e-75	1	1
ENSPNAP00000019041	ResIII	PF04851.15	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000039277	-	8257	XM_017697149	ENSPNAP00000019041	1100 (aa)	XP_017552638	UPI0008144164

Gene Model

Click here to download ENSPNAG00000025614's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000025614's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000025614	upf1	100	93.405	ENSG00000005007	UPF1	100	92.959	Homo_sapiens
ENSPNAG00000025614	upf1	100	94.651	ENSAPOG00000010916	-	100	94.470	Acanthochromis_polyacanthus
ENSPNAG00000025614	upf1	100	94.480	ENSAPOG00000023773	upf1	100	94.480	Acanthochromis_polyacanthus
ENSPNAG00000025614	upf1	100	93.079	ENSAMEG00000011474	UPF1	100	92.635	Ailuropoda_melanoleuca
ENSPNAG00000025614	upf1	100	94.751	ENSACIG00000019949	upf1	100	94.909	Amphilophus_citrinellus
ENSPNAG00000025614	upf1	93	94.158	ENSACIG00000010985	-	100	93.969	Amphilophus_citrinellus
ENSPNAG00000025614	upf1	100	94.742	ENSAOCG00000006352	-	100	94.560	Amphiprion_ocellaris
ENSPNAG00000025614	upf1	100	94.000	ENSAOCG00000018519	upf1	100	94.075	Amphiprion_ocellaris
ENSPNAG00000025614	upf1	100	94.742	ENSAPEG00000006292	-	100	94.560	Amphiprion_percula
ENSPNAG00000025614	upf1	100	94.000	ENSAPEG00000016344	upf1	100	94.075	Amphiprion_percula
ENSPNAG00000025614	upf1	100	93.405	ENSATEG00000017867	upf1	100	93.817	Anabas_testudineus
ENSPNAG00000025614	upf1	100	94.651	ENSATEG00000016606	-	100	94.470	Anabas_testudineus
ENSPNAG00000025614	upf1	95	95.265	ENSAPLG00000009175	UPF1	100	94.697	Anas_platyrhynchos
ENSPNAG00000025614	upf1	95	92.918	ENSANAG00000024107	UPF1	96	92.351	Aotus_nancymaae
ENSPNAG00000025614	upf1	100	93.920	ENSACLG00000022630	-	100	94.374	Astatotilapia_calliptera
ENSPNAG00000025614	upf1	100	94.570	ENSACLG00000007181	upf1	100	94.727	Astatotilapia_calliptera
ENSPNAG00000025614	upf1	100	99.545	ENSAMXG00000042187	upf1	100	99.545	Astyanax_mexicanus
ENSPNAG00000025614	upf1	100	93.091	ENSBTAG00000020922	UPF1	100	92.648	Bos_taurus
ENSPNAG00000025614	upf1	81	54.576	WBGene00004880	smg-2	83	54.576	Caenorhabditis_elegans
ENSPNAG00000025614	upf1	100	92.668	ENSCJAG00000019627	UPF1	100	92.226	Callithrix_jacchus
ENSPNAG00000025614	upf1	100	92.845	ENSCAFG00000014578	UPF1	100	92.403	Canis_familiaris
ENSPNAG00000025614	upf1	100	93.583	ENSCAFG00020012347	UPF1	100	93.137	Canis_lupus_dingo
ENSPNAG00000025614	upf1	100	93.834	ENSCHIG00000011018	UPF1	100	93.387	Capra_hircus
ENSPNAG00000025614	upf1	95	94.777	ENSTSYG00000008877	UPF1	98	94.207	Carlito_syrichta
ENSPNAG00000025614	upf1	96	93.897	ENSCAPG00000005758	UPF1	95	94.017	Cavia_aperea
ENSPNAG00000025614	upf1	100	93.801	ENSCPOG00000025463	UPF1	100	93.261	Cavia_porcellus
ENSPNAG00000025614	upf1	100	93.405	ENSCCAG00000032175	UPF1	100	92.959	Cebus_capucinus
ENSPNAG00000025614	upf1	94	94.852	ENSCATG00000040306	UPF1	98	94.112	Cercocebus_atys
ENSPNAG00000025614	upf1	95	94.777	ENSCLAG00000004037	UPF1	99	94.207	Chinchilla_lanigera
ENSPNAG00000025614	upf1	100	93.405	ENSCSAG00000005276	UPF1	100	92.959	Chlorocebus_sabaeus
ENSPNAG00000025614	upf1	100	93.817	ENSCPBG00000012513	UPF1	100	93.280	Chrysemys_picta_bellii
ENSPNAG00000025614	upf1	77	79.601	ENSCING00000021399	-	99	79.225	Ciona_intestinalis
ENSPNAG00000025614	upf1	99	72.482	ENSCSAVG00000006533	-	99	72.133	Ciona_savignyi
ENSPNAG00000025614	upf1	95	94.777	ENSCANG00000029819	UPF1	97	94.207	Colobus_angolensis_palliatus
ENSPNAG00000025614	upf1	100	93.286	ENSCGRG00001021067	Upf1	100	92.838	Cricetulus_griseus_chok1gshd
ENSPNAG00000025614	upf1	95	94.207	ENSCGRG00000013480	Upf1	98	93.637	Cricetulus_griseus_crigri
ENSPNAG00000025614	upf1	100	88.838	ENSCSEG00000017239	upf1	100	88.198	Cynoglossus_semilaevis
ENSPNAG00000025614	upf1	100	94.283	ENSCSEG00000016159	-	100	93.739	Cynoglossus_semilaevis
ENSPNAG00000025614	upf1	100	93.563	ENSCVAG00000010561	upf1	100	94.016	Cyprinodon_variegatus
ENSPNAG00000025614	upf1	100	99.000	ENSDARG00000016302	upf1	100	99.000	Danio_rerio
ENSPNAG00000025614	upf1	95	92.125	ENSDORG00000009984	Upf1	95	91.556	Dipodomys_ordii
ENSPNAG00000025614	upf1	85	72.495	FBgn0030354	Upf1	81	71.369	Drosophila_melanogaster
ENSPNAG00000025614	upf1	54	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSPNAG00000025614	upf1	100	93.744	ENSEASG00005006549	UPF1	100	93.298	Equus_asinus_asinus
ENSPNAG00000025614	upf1	100	93.744	ENSECAG00000010639	UPF1	100	93.298	Equus_caballus
ENSPNAG00000025614	upf1	100	94.480	ENSELUG00000020917	upf1	100	93.484	Esox_lucius
ENSPNAG00000025614	upf1	100	93.857	ENSELUG00000012916	-	100	94.399	Esox_lucius
ENSPNAG00000025614	upf1	100	92.845	ENSFCAG00000009757	UPF1	100	92.403	Felis_catus
ENSPNAG00000025614	upf1	95	95.619	ENSFALG00000009312	UPF1	96	95.048	Ficedula_albicollis
ENSPNAG00000025614	upf1	95	94.682	ENSFDAG00000014816	UPF1	99	94.112	Fukomys_damarensis
ENSPNAG00000025614	upf1	100	91.367	ENSFHEG00000006428	upf1	100	90.412	Fundulus_heteroclitus
ENSPNAG00000025614	upf1	86	94.203	ENSFHEG00000016276	-	96	93.841	Fundulus_heteroclitus
ENSPNAG00000025614	upf1	100	93.088	ENSGMOG00000007541	upf1	100	93.357	Gadus_morhua
ENSPNAG00000025614	upf1	100	93.839	ENSGALG00000003220	UPF1	100	93.214	Gallus_gallus
ENSPNAG00000025614	upf1	63	95.683	ENSGAFG00000015443	-	85	95.683	Gambusia_affinis
ENSPNAG00000025614	upf1	100	93.563	ENSGAFG00000004831	upf1	100	94.016	Gambusia_affinis
ENSPNAG00000025614	upf1	100	94.419	ENSGAGG00000022217	UPF1	100	93.969	Gopherus_agassizii
ENSPNAG00000025614	upf1	95	95.590	ENSGGOG00000002608	UPF1	99	95.014	Gorilla_gorilla
ENSPNAG00000025614	upf1	89	93.590	ENSHBUG00000014694	upf1	100	93.590	Haplochromis_burtoni
ENSPNAG00000025614	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSPNAG00000025614	upf1	100	92.580	ENSHGLG00000010900	UPF1	100	92.138	Heterocephalus_glaber_female
ENSPNAG00000025614	upf1	95	92.972	ENSHGLG00100005904	UPF1	96	92.403	Heterocephalus_glaber_male
ENSPNAG00000025614	upf1	100	94.198	ENSHCOG00000008918	upf1	100	94.198	Hippocampus_comes
ENSPNAG00000025614	upf1	100	99.000	ENSIPUG00000005108	UPF1	100	99.000	Ictalurus_punctatus
ENSPNAG00000025614	upf1	100	93.405	ENSSTOG00000009196	UPF1	100	92.959	Ictidomys_tridecemlineatus
ENSPNAG00000025614	upf1	100	92.622	ENSJJAG00000023151	Upf1	100	92.178	Jaculus_jaculus
ENSPNAG00000025614	upf1	100	93.654	ENSKMAG00000004962	upf1	100	94.107	Kryptolebias_marmoratus
ENSPNAG00000025614	upf1	100	93.178	ENSLBEG00000014862	upf1	100	93.268	Labrus_bergylta
ENSPNAG00000025614	upf1	100	94.470	ENSLBEG00000027848	-	100	94.288	Labrus_bergylta
ENSPNAG00000025614	upf1	63	96.418	ENSLACG00000008482	UPF1	100	96.418	Latimeria_chalumnae
ENSPNAG00000025614	upf1	100	96.915	ENSLOCG00000002072	upf1	100	96.915	Lepisosteus_oculatus
ENSPNAG00000025614	upf1	100	92.743	ENSLAFG00000014963	UPF1	100	92.301	Loxodonta_africana
ENSPNAG00000025614	upf1	100	93.327	ENSMFAG00000037748	UPF1	100	92.883	Macaca_fascicularis
ENSPNAG00000025614	upf1	100	93.079	ENSMMUG00000023286	UPF1	100	92.635	Macaca_mulatta
ENSPNAG00000025614	upf1	100	93.327	ENSMNEG00000000046	UPF1	100	92.883	Macaca_nemestrina
ENSPNAG00000025614	upf1	95	94.777	ENSMLEG00000028404	UPF1	99	94.207	Mandrillus_leucophaeus
ENSPNAG00000025614	upf1	100	93.011	ENSMAMG00000006229	upf1	100	93.548	Mastacembelus_armatus
ENSPNAG00000025614	upf1	100	94.379	ENSMAMG00000006231	-	100	94.198	Mastacembelus_armatus
ENSPNAG00000025614	upf1	100	93.920	ENSMZEG00005016386	-	100	94.374	Maylandia_zebra
ENSPNAG00000025614	upf1	100	93.560	ENSMZEG00005003489	upf1	100	94.239	Maylandia_zebra
ENSPNAG00000025614	upf1	95	94.782	ENSMGAG00000004745	UPF1	100	94.213	Meleagris_gallopavo
ENSPNAG00000025614	upf1	95	94.207	ENSMAUG00000011398	Upf1	95	93.637	Mesocricetus_auratus
ENSPNAG00000025614	upf1	100	93.494	ENSMICG00000001659	UPF1	100	93.048	Microcebus_murinus
ENSPNAG00000025614	upf1	100	92.547	ENSMOCG00000005699	Upf1	100	92.192	Microtus_ochrogaster
ENSPNAG00000025614	upf1	100	93.818	ENSMMOG00000007881	upf1	100	93.909	Mola_mola
ENSPNAG00000025614	upf1	95	92.073	ENSMMOG00000007537	-	99	91.882	Mola_mola
ENSPNAG00000025614	upf1	100	92.599	ENSMODG00000003689	UPF1	100	92.247	Monodelphis_domestica
ENSPNAG00000025614	upf1	100	94.000	ENSMALG00000000144	upf1	100	94.273	Monopterus_albus
ENSPNAG00000025614	upf1	100	93.135	ENSMALG00000018100	-	100	92.954	Monopterus_albus
ENSPNAG00000025614	upf1	100	93.196	MGP_CAROLIEiJ_G0031142	Upf1	100	92.748	Mus_caroli
ENSPNAG00000025614	upf1	100	93.196	ENSMUSG00000058301	Upf1	100	92.748	Mus_musculus
ENSPNAG00000025614	upf1	100	93.196	MGP_PahariEiJ_G0021607	Upf1	100	92.748	Mus_pahari
ENSPNAG00000025614	upf1	100	93.196	MGP_SPRETEiJ_G0032260	Upf1	100	92.748	Mus_spretus
ENSPNAG00000025614	upf1	100	93.583	ENSMPUG00000015516	UPF1	100	93.137	Mustela_putorius_furo
ENSPNAG00000025614	upf1	99	93.560	ENSMLUG00000012122	UPF1	99	93.113	Myotis_lucifugus
ENSPNAG00000025614	upf1	100	92.212	ENSNGAG00000024107	Upf1	100	91.770	Nannospalax_galili
ENSPNAG00000025614	upf1	100	92.760	ENSNBRG00000000670	upf1	100	92.909	Neolamprologus_brichardi
ENSPNAG00000025614	upf1	100	90.464	ENSNBRG00000022069	-	100	93.792	Neolamprologus_brichardi
ENSPNAG00000025614	upf1	95	88.984	ENSNLEG00000006062	UPF1	99	88.414	Nomascus_leucogenys
ENSPNAG00000025614	upf1	83	90.039	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSPNAG00000025614	upf1	95	88.591	ENSOPRG00000014018	UPF1	99	88.015	Ochotona_princeps
ENSPNAG00000025614	upf1	100	93.795	ENSODEG00000012426	UPF1	100	93.255	Octodon_degus
ENSPNAG00000025614	upf1	100	93.920	ENSONIG00000012729	-	100	94.374	Oreochromis_niloticus
ENSPNAG00000025614	upf1	100	93.560	ENSONIG00000010452	upf1	100	94.239	Oreochromis_niloticus
ENSPNAG00000025614	upf1	100	92.920	ENSOANG00000004568	UPF1	100	92.212	Ornithorhynchus_anatinus
ENSPNAG00000025614	upf1	100	94.470	ENSORLG00000008453	upf1	100	94.288	Oryzias_latipes
ENSPNAG00000025614	upf1	100	94.384	ENSORLG00020014758	upf1	100	94.203	Oryzias_latipes_hni
ENSPNAG00000025614	upf1	100	94.384	ENSORLG00015010165	upf1	100	94.203	Oryzias_latipes_hsok
ENSPNAG00000025614	upf1	100	94.560	ENSOMEG00000003665	upf1	100	94.379	Oryzias_melastigma
ENSPNAG00000025614	upf1	100	93.494	ENSOGAG00000012866	UPF1	100	93.048	Otolemur_garnettii
ENSPNAG00000025614	upf1	96	92.004	ENSOARG00000010739	UPF1	100	91.268	Ovis_aries
ENSPNAG00000025614	upf1	95	94.777	ENSPPAG00000043884	UPF1	96	94.207	Pan_paniscus
ENSPNAG00000025614	upf1	100	92.845	ENSPPRG00000023470	UPF1	100	92.403	Panthera_pardus
ENSPNAG00000025614	upf1	95	93.589	ENSPTIG00000010159	UPF1	99	93.014	Panthera_tigris_altaica
ENSPNAG00000025614	upf1	100	93.327	ENSPTRG00000010721	UPF1	100	92.883	Pan_troglodytes
ENSPNAG00000025614	upf1	100	93.327	ENSPANG00000008847	UPF1	100	92.883	Papio_anubis
ENSPNAG00000025614	upf1	91	96.922	ENSPKIG00000006069	upf1	97	96.922	Paramormyrops_kingsleyae
ENSPNAG00000025614	upf1	70	94.785	ENSPSIG00000009491	UPF1	100	94.003	Pelodiscus_sinensis
ENSPNAG00000025614	upf1	100	93.019	ENSPMGG00000017327	upf1	100	93.019	Periophthalmus_magnuspinnatus
ENSPNAG00000025614	upf1	100	92.547	ENSPEMG00000001085	Upf1	100	92.103	Peromyscus_maniculatus_bairdii
ENSPNAG00000025614	upf1	100	87.928	ENSPMAG00000001206	upf1	100	87.466	Petromyzon_marinus
ENSPNAG00000025614	upf1	100	93.845	ENSPCIG00000006156	UPF1	100	93.399	Phascolarctos_cinereus
ENSPNAG00000025614	upf1	100	93.382	ENSPLAG00000016232	-	100	93.569	Poecilia_latipinna
ENSPNAG00000025614	upf1	100	92.967	ENSPLAG00000018155	-	100	92.065	Poecilia_latipinna
ENSPNAG00000025614	upf1	100	93.472	ENSPMEG00000016319	-	100	93.659	Poecilia_mexicana
ENSPNAG00000025614	upf1	100	93.285	ENSPMEG00000011443	-	100	92.727	Poecilia_mexicana
ENSPNAG00000025614	upf1	100	92.799	ENSPREG00000009940	upf1	100	92.079	Poecilia_reticulata
ENSPNAG00000025614	upf1	100	93.200	ENSPREG00000011247	-	100	93.388	Poecilia_reticulata
ENSPNAG00000025614	upf1	100	87.721	ENSPPYG00000009752	UPF1	100	87.367	Pongo_abelii
ENSPNAG00000025614	upf1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSPNAG00000025614	upf1	100	93.250	ENSPCOG00000023813	UPF1	100	92.806	Propithecus_coquereli
ENSPNAG00000025614	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSPNAG00000025614	upf1	100	93.920	ENSPNYG00000016731	-	100	94.374	Pundamilia_nyererei
ENSPNAG00000025614	upf1	100	93.560	ENSPNYG00000003694	upf1	100	94.239	Pundamilia_nyererei
ENSPNAG00000025614	upf1	100	93.196	ENSRNOG00000020134	Upf1	100	92.748	Rattus_norvegicus
ENSPNAG00000025614	upf1	95	92.403	ENSRBIG00000013894	UPF1	98	95.087	Rhinopithecus_bieti
ENSPNAG00000025614	upf1	95	94.777	ENSRROG00000040935	UPF1	98	95.087	Rhinopithecus_roxellana
ENSPNAG00000025614	upf1	76	55.294	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSPNAG00000025614	upf1	95	94.772	ENSSBOG00000023632	UPF1	96	94.202	Saimiri_boliviensis_boliviensis
ENSPNAG00000025614	upf1	95	94.976	ENSSHAG00000010499	UPF1	100	94.976	Sarcophilus_harrisii
ENSPNAG00000025614	upf1	100	97.278	ENSSFOG00015021095	upf1	100	97.278	Scleropages_formosus
ENSPNAG00000025614	upf1	100	94.923	ENSSMAG00000021018	-	100	94.742	Scophthalmus_maximus
ENSPNAG00000025614	upf1	100	92.549	ENSSMAG00000005055	upf1	100	92.639	Scophthalmus_maximus
ENSPNAG00000025614	upf1	100	93.369	ENSSDUG00000013320	upf1	100	93.907	Seriola_dumerili
ENSPNAG00000025614	upf1	100	94.832	ENSSDUG00000009629	-	100	94.651	Seriola_dumerili
ENSPNAG00000025614	upf1	100	94.213	ENSSLDG00000020868	upf1	100	94.495	Seriola_lalandi_dorsalis
ENSPNAG00000025614	upf1	100	94.832	ENSSLDG00000006878	-	100	94.651	Seriola_lalandi_dorsalis
ENSPNAG00000025614	upf1	100	94.160	ENSSPUG00000010538	UPF1	100	93.711	Sphenodon_punctatus
ENSPNAG00000025614	upf1	100	92.747	ENSSPAG00000000003	upf1	100	92.377	Stegastes_partitus
ENSPNAG00000025614	upf1	100	93.926	ENSSPAG00000011521	-	100	93.926	Stegastes_partitus
ENSPNAG00000025614	upf1	100	93.744	ENSSSCG00000039301	UPF1	99	95.024	Sus_scrofa
ENSPNAG00000025614	upf1	82	88.085	ENSTGUG00000001057	UPF1	100	92.308	Taeniopygia_guttata
ENSPNAG00000025614	upf1	100	92.502	ENSTRUG00000005131	-	100	93.382	Takifugu_rubripes
ENSPNAG00000025614	upf1	100	93.727	ENSTRUG00000000150	upf1	100	93.545	Takifugu_rubripes
ENSPNAG00000025614	upf1	100	90.080	ENSTTRG00000011544	UPF1	100	89.544	Tursiops_truncatus
ENSPNAG00000025614	upf1	100	93.583	ENSUAMG00000007093	UPF1	100	93.137	Ursus_americanus
ENSPNAG00000025614	upf1	99	91.916	ENSUMAG00000006652	UPF1	99	96.277	Ursus_maritimus
ENSPNAG00000025614	upf1	100	93.583	ENSVVUG00000007797	UPF1	100	93.137	Vulpes_vulpes
ENSPNAG00000025614	upf1	100	80.722	ENSXETG00000013602	upf1	100	80.106	Xenopus_tropicalis
ENSPNAG00000025614	upf1	97	92.662	ENSXCOG00000015275	-	96	92.669	Xiphophorus_couchianus
ENSPNAG00000025614	upf1	94	94.192	ENSXCOG00000005764	-	99	94.676	Xiphophorus_couchianus
ENSPNAG00000025614	upf1	100	92.818	ENSXMAG00000001703	-	100	92.825	Xiphophorus_maculatus
ENSPNAG00000025614	upf1	100	93.744	ENSXMAG00000002540	-	100	94.198	Xiphophorus_maculatus