EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000027769 (Gene tree)
Gene ID: 108427683
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 4768 bases
Position: chrKV575340.1:1650194-1654961
Accession: 108427683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000020841	LSM	PF01423.22	8.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000031687	-	684	XM_017698024	ENSPNAP00000020841	95 (aa)	XP_017553513	UPI0000E3C327

Gene Model

Click here to download ENSPNAG00000027769's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000027769's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000027769	si:ch73-14h10.2	99	31.313	ENSPNAG00000016598	lsm4	72	31.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSG00000204392	LSM2	100	98.947	Homo_sapiens
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSAPOG00000017967	si:ch73-14h10.2	100	100.000	Acanthochromis_polyacanthus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSACIG00000007795	si:ch73-14h10.2	62	100.000	Amphilophus_citrinellus
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSAOCG00000006949	si:ch73-14h10.2	78	100.000	Amphiprion_ocellaris
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSAPEG00000020375	si:ch73-14h10.2	87	100.000	Amphiprion_percula
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSATEG00000011376	si:ch73-14h10.2	100	100.000	Anabas_testudineus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSACAG00000017281	LSM2	90	98.936	Anolis_carolinensis
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSANAG00000028372	LSM2	100	98.947	Aotus_nancymaae
ENSPNAG00000027769	si:ch73-14h10.2	96	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSACLG00000024717	smx5	100	100.000	Astatotilapia_calliptera
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSAMXG00000036868	si:ch73-14h10.2	100	100.000	Astyanax_mexicanus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSBTAG00000005634	LSM2	100	98.947	Bos_taurus
ENSPNAG00000027769	si:ch73-14h10.2	99	82.979	WBGene00001808	gut-2	97	82.979	Caenorhabditis_elegans
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCJAG00000040899	LSM2	100	98.947	Callithrix_jacchus
ENSPNAG00000027769	si:ch73-14h10.2	75	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSTSYG00000034844	LSM2	100	98.947	Carlito_syrichta
ENSPNAG00000027769	si:ch73-14h10.2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSPNAG00000027769	si:ch73-14h10.2	76	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCPOG00000021053	LSM2	100	98.947	Cavia_porcellus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCCAG00000024276	LSM2	100	98.947	Cebus_capucinus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCATG00000013737	LSM2	100	98.947	Cercocebus_atys
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCLAG00000008081	LSM2	100	98.947	Chinchilla_lanigera
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCSAG00000008800	LSM2	100	98.947	Chlorocebus_sabaeus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCHOG00000007702	LSM2	100	98.947	Choloepus_hoffmanni
ENSPNAG00000027769	si:ch73-14h10.2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCANG00000039576	LSM2	100	98.947	Colobus_angolensis_palliatus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSCGRG00001013932	Lsm2	100	98.947	Cricetulus_griseus_chok1gshd
ENSPNAG00000027769	si:ch73-14h10.2	76	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSCSEG00000002911	si:ch73-14h10.2	100	100.000	Cynoglossus_semilaevis
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	Cyprinodon_variegatus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSDORG00000026571	Lsm2	100	98.947	Dipodomys_ordii
ENSPNAG00000027769	si:ch73-14h10.2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSELUG00000008241	smx5	100	98.947	Esox_lucius
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSFCAG00000045887	LSM2	100	98.947	Felis_catus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSFDAG00000000390	LSM2	100	98.947	Fukomys_damarensis
ENSPNAG00000027769	si:ch73-14h10.2	99	96.875	ENSFHEG00000009619	si:ch73-14h10.2	100	96.875	Fundulus_heteroclitus
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSGMOG00000019208	si:ch73-14h10.2	100	100.000	Gadus_morhua
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSGAFG00000017286	si:ch73-14h10.2	100	100.000	Gambusia_affinis
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSGACG00000003827	si:ch73-14h10.2	100	100.000	Gasterosteus_aculeatus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSGAGG00000012458	LSM2	100	98.947	Gopherus_agassizii
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSGGOG00000011383	LSM2	100	98.947	Gorilla_gorilla
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSHGLG00000011299	LSM2	100	98.947	Heterocephalus_glaber_female
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSHGLG00100017194	LSM2	100	98.947	Heterocephalus_glaber_male
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSHCOG00000014057	si:ch73-14h10.2	100	100.000	Hippocampus_comes
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSIPUG00000010539	lsm2	100	100.000	Ictalurus_punctatus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSSTOG00000013144	LSM2	100	98.947	Ictidomys_tridecemlineatus
ENSPNAG00000027769	si:ch73-14h10.2	94	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSKMAG00000014909	si:ch73-14h10.2	100	100.000	Kryptolebias_marmoratus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSLBEG00000025781	si:ch73-14h10.2	98	98.936	Labrus_bergylta
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSLACG00000015064	LSM2	100	100.000	Latimeria_chalumnae
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSLOCG00000005228	si:ch73-14h10.2	100	100.000	Lepisosteus_oculatus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMFAG00000001016	LSM2	100	98.947	Macaca_fascicularis
ENSPNAG00000027769	si:ch73-14h10.2	99	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMMUG00000006832	LSM2	100	98.947	Macaca_mulatta
ENSPNAG00000027769	si:ch73-14h10.2	79	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMNEG00000045355	LSM2	100	98.947	Macaca_nemestrina
ENSPNAG00000027769	si:ch73-14h10.2	99	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMLEG00000037369	-	100	98.947	Mandrillus_leucophaeus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSMAMG00000010053	si:ch73-14h10.2	73	100.000	Mastacembelus_armatus
ENSPNAG00000027769	si:ch73-14h10.2	99	97.917	ENSMZEG00005008688	si:ch73-14h10.2	100	97.917	Maylandia_zebra
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMAUG00000021966	Lsm2	100	98.947	Mesocricetus_auratus
ENSPNAG00000027769	si:ch73-14h10.2	76	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMOCG00000015306	Lsm2	100	98.947	Microtus_ochrogaster
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSMMOG00000005603	si:ch73-14h10.2	100	98.936	Mola_mola
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSMODG00000015177	LSM2	99	100.000	Monodelphis_domestica
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSMALG00000016490	si:ch73-14h10.2	100	100.000	Monopterus_albus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	Mus_caroli
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSMUSG00000007050	Lsm2	100	98.947	Mus_musculus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	MGP_PahariEiJ_G0020485	Lsm2	100	98.947	Mus_pahari
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	MGP_SPRETEiJ_G0022395	Lsm2	100	98.947	Mus_spretus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSNGAG00000003997	Lsm2	100	98.947	Nannospalax_galili
ENSPNAG00000027769	si:ch73-14h10.2	99	97.917	ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	Neolamprologus_brichardi
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSNLEG00000035542	LSM2	100	98.947	Nomascus_leucogenys
ENSPNAG00000027769	si:ch73-14h10.2	75	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSOPRG00000003668	LSM2	100	98.947	Ochotona_princeps
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSODEG00000017583	LSM2	100	98.947	Octodon_degus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSONIG00000019321	si:ch73-14h10.2	100	100.000	Oreochromis_niloticus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSOCUG00000002583	LSM2	100	98.947	Oryctolagus_cuniculus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSORLG00000029858	si:ch73-14h10.2	100	100.000	Oryzias_latipes
ENSPNAG00000027769	si:ch73-14h10.2	100	76.613	ENSORLG00015000465	si:ch73-14h10.2	100	76.613	Oryzias_latipes_hsok
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSOMEG00000002892	si:ch73-14h10.2	100	100.000	Oryzias_melastigma
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPPAG00000032431	LSM2	100	98.947	Pan_paniscus
ENSPNAG00000027769	si:ch73-14h10.2	79	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPPRG00000015353	LSM2	100	98.947	Panthera_pardus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPTRG00000017986	LSM2	100	98.947	Pan_troglodytes
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPANG00000024577	LSM2	100	98.947	Papio_anubis
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSPKIG00000007028	si:ch73-14h10.2	100	100.000	Paramormyrops_kingsleyae
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSPSIG00000004458	LSM2	78	98.936	Pelodiscus_sinensis
ENSPNAG00000027769	si:ch73-14h10.2	99	97.872	ENSPMGG00000018511	si:ch73-14h10.2	100	97.872	Periophthalmus_magnuspinnatus
ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	ENSPCIG00000018560	-	95	100.000	Phascolarctos_cinereus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSPFOG00000001621	si:ch73-14h10.2	100	100.000	Poecilia_formosa
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSPLAG00000017165	si:ch73-14h10.2	100	100.000	Poecilia_latipinna
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSPMEG00000019574	si:ch73-14h10.2	100	100.000	Poecilia_mexicana
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSPREG00000016534	si:ch73-14h10.2	100	98.936	Poecilia_reticulata
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPPYG00000016461	-	54	98.947	Pongo_abelii
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPCAG00000013737	LSM2	100	98.947	Procavia_capensis
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPCOG00000020134	LSM2	100	98.947	Propithecus_coquereli
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSPVAG00000012405	LSM2	100	98.947	Pteropus_vampyrus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSPNYG00000019298	smx5	100	100.000	Pundamilia_nyererei
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSRNOG00000048725	Lsm2	100	98.947	Rattus_norvegicus
ENSPNAG00000027769	si:ch73-14h10.2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSRBIG00000010172	LSM2	100	98.947	Rhinopithecus_bieti
ENSPNAG00000027769	si:ch73-14h10.2	79	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSPNAG00000027769	si:ch73-14h10.2	79	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSRROG00000030345	LSM2	100	98.947	Rhinopithecus_roxellana
ENSPNAG00000027769	si:ch73-14h10.2	100	64.211	YBL026W	LSM2	100	64.211	Saccharomyces_cerevisiae
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSSBOG00000018943	LSM2	100	98.947	Saimiri_boliviensis_boliviensis
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSSFOG00015006734	lsm2	100	100.000	Scleropages_formosus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSSDUG00000021605	smx5	100	100.000	Seriola_dumerili
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSSLDG00000002765	si:ch73-14h10.2	100	100.000	Seriola_lalandi_dorsalis
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSSPUG00000009631	LSM2	100	100.000	Sphenodon_punctatus
ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	ENSSPAG00000016904	si:ch73-14h10.2	100	100.000	Stegastes_partitus
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSSSCG00000039021	LSM2	100	98.947	Sus_scrofa
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	Takifugu_rubripes
ENSPNAG00000027769	si:ch73-14h10.2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSTTRG00000014131	LSM2	100	98.947	Tursiops_truncatus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSPNAG00000027769	si:ch73-14h10.2	79	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSXCOG00000006078	si:ch73-14h10.2	100	98.936	Xiphophorus_couchianus
ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	ENSXMAG00000028018	si:ch73-14h10.2	100	98.936	Xiphophorus_maculatus