EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNAG00000028069 (Gene tree)
Gene ID: -
Gene Symbol: LIG4 (1 of many)
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 2835 bases
Position: chrKV576174.1:69081-71915
Accession: 6601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000021079	RNA_ligase	PF09414.10	3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000032088	LIG4 (1 of many)-201	2718	-	ENSPNAP00000021079	905 (aa)	-	-

Gene Model

Click here to download ENSPNAG00000028069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000028069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNAG00000028069	LIG4	100	100.000	ENSPNAG00000028056	lig4	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000028069	LIG4	100	64.803	ENSG00000174405	LIG4	100	65.403	Homo_sapiens
ENSPNAG00000028069	LIG4	99	82.143	ENSAPOG00000000866	lig4	99	82.143	Acanthochromis_polyacanthus
ENSPNAG00000028069	LIG4	100	63.746	ENSAMEG00000019685	LIG4	99	63.417	Ailuropoda_melanoleuca
ENSPNAG00000028069	LIG4	99	82.143	ENSACIG00000018309	lig4	98	82.143	Amphilophus_citrinellus
ENSPNAG00000028069	LIG4	99	82.478	ENSAOCG00000011768	lig4	99	82.478	Amphiprion_ocellaris
ENSPNAG00000028069	LIG4	99	82.589	ENSAPEG00000017815	lig4	99	82.589	Amphiprion_percula
ENSPNAG00000028069	LIG4	99	82.071	ENSATEG00000005583	lig4	98	82.071	Anabas_testudineus
ENSPNAG00000028069	LIG4	96	66.895	ENSAPLG00000001673	LIG4	99	66.895	Anas_platyrhynchos
ENSPNAG00000028069	LIG4	99	67.149	ENSACAG00000014566	LIG4	99	67.149	Anolis_carolinensis
ENSPNAG00000028069	LIG4	100	64.583	ENSANAG00000012446	LIG4	100	64.583	Aotus_nancymaae
ENSPNAG00000028069	LIG4	99	81.036	ENSACLG00000027051	lig4	99	81.036	Astatotilapia_calliptera
ENSPNAG00000028069	LIG4	99	90.376	ENSAMXG00000008192	lig4	94	90.376	Astyanax_mexicanus
ENSPNAG00000028069	LIG4	100	63.965	ENSBTAG00000015868	LIG4	100	63.965	Bos_taurus
ENSPNAG00000028069	LIG4	100	64.074	ENSCJAG00000014689	LIG4	100	64.074	Callithrix_jacchus
ENSPNAG00000028069	LIG4	100	63.706	ENSCAFG00000006031	LIG4	100	63.706	Canis_familiaris
ENSPNAG00000028069	LIG4	100	63.706	ENSCAFG00020021230	LIG4	100	63.706	Canis_lupus_dingo
ENSPNAG00000028069	LIG4	100	63.855	ENSCHIG00000001019	LIG4	100	63.855	Capra_hircus
ENSPNAG00000028069	LIG4	99	64.128	ENSCAPG00000006284	LIG4	100	64.128	Cavia_aperea
ENSPNAG00000028069	LIG4	100	63.965	ENSCPOG00000014266	LIG4	100	63.965	Cavia_porcellus
ENSPNAG00000028069	LIG4	100	64.294	ENSCCAG00000019971	LIG4	100	64.294	Cebus_capucinus
ENSPNAG00000028069	LIG4	99	64.934	ENSCATG00000021075	LIG4	99	64.934	Cercocebus_atys
ENSPNAG00000028069	LIG4	100	64.294	ENSCLAG00000003376	LIG4	100	64.294	Chinchilla_lanigera
ENSPNAG00000028069	LIG4	100	64.732	ENSCSAG00000000211	LIG4	100	64.732	Chlorocebus_sabaeus
ENSPNAG00000028069	LIG4	99	69.145	ENSCPBG00000023291	LIG4	99	69.145	Chrysemys_picta_bellii
ENSPNAG00000028069	LIG4	70	46.226	ENSCING00000009536	-	97	46.226	Ciona_intestinalis
ENSPNAG00000028069	LIG4	83	45.000	ENSCSAVG00000010336	-	98	45.000	Ciona_savignyi
ENSPNAG00000028069	LIG4	100	64.513	ENSCANG00000005805	LIG4	100	64.513	Colobus_angolensis_palliatus
ENSPNAG00000028069	LIG4	100	64.513	ENSCGRG00001012072	Lig4	100	64.513	Cricetulus_griseus_chok1gshd
ENSPNAG00000028069	LIG4	100	64.513	ENSCGRG00000013417	Lig4	100	64.513	Cricetulus_griseus_crigri
ENSPNAG00000028069	LIG4	97	80.160	ENSCSEG00000013905	lig4	95	80.160	Cynoglossus_semilaevis
ENSPNAG00000028069	LIG4	99	81.828	ENSCVAG00000007896	lig4	99	81.828	Cyprinodon_variegatus
ENSPNAG00000028069	LIG4	99	85.363	ENSDARG00000060620	lig4	98	85.363	Danio_rerio
ENSPNAG00000028069	LIG4	100	64.184	ENSDNOG00000000513	LIG4	100	64.184	Dasypus_novemcinctus
ENSPNAG00000028069	LIG4	100	64.951	ENSDORG00000027303	Lig4	100	64.951	Dipodomys_ordii
ENSPNAG00000028069	LIG4	89	31.455	FBgn0030506	Lig4	91	31.455	Drosophila_melanogaster
ENSPNAG00000028069	LIG4	99	62.749	ENSETEG00000015563	LIG4	100	63.082	Echinops_telfairi
ENSPNAG00000028069	LIG4	99	44.198	ENSEBUG00000014243	lig4	98	43.671	Eptatretus_burgeri
ENSPNAG00000028069	LIG4	100	64.184	ENSEASG00005022073	LIG4	100	64.184	Equus_asinus_asinus
ENSPNAG00000028069	LIG4	100	63.816	ENSECAG00000003257	LIG4	100	63.706	Equus_caballus
ENSPNAG00000028069	LIG4	99	82.575	ENSELUG00000006787	lig4	99	82.575	Esox_lucius
ENSPNAG00000028069	LIG4	100	63.417	ENSFCAG00000031985	LIG4	100	63.417	Felis_catus
ENSPNAG00000028069	LIG4	88	68.931	ENSFALG00000004214	LIG4	97	68.931	Ficedula_albicollis
ENSPNAG00000028069	LIG4	100	63.965	ENSFDAG00000008973	LIG4	100	63.965	Fukomys_damarensis
ENSPNAG00000028069	LIG4	99	82.294	ENSFHEG00000007398	lig4	89	82.294	Fundulus_heteroclitus
ENSPNAG00000028069	LIG4	85	77.649	ENSGMOG00000012843	lig4	99	77.649	Gadus_morhua
ENSPNAG00000028069	LIG4	99	66.296	ENSGALG00000016854	LIG4	99	66.296	Gallus_gallus
ENSPNAG00000028069	LIG4	98	81.676	ENSGAFG00000019779	lig4	95	81.758	Gambusia_affinis
ENSPNAG00000028069	LIG4	99	78.683	ENSGACG00000014135	lig4	98	78.906	Gasterosteus_aculeatus
ENSPNAG00000028069	LIG4	100	64.583	ENSGGOG00000027771	LIG4	100	64.583	Gorilla_gorilla
ENSPNAG00000028069	LIG4	99	80.816	ENSHBUG00000006245	lig4	99	80.816	Haplochromis_burtoni
ENSPNAG00000028069	LIG4	99	64.725	ENSHGLG00000000718	LIG4	99	64.725	Heterocephalus_glaber_female
ENSPNAG00000028069	LIG4	99	64.725	ENSHGLG00100003265	LIG4	99	64.725	Heterocephalus_glaber_male
ENSPNAG00000028069	LIG4	99	78.444	ENSHCOG00000012010	lig4	98	78.444	Hippocampus_comes
ENSPNAG00000028069	LIG4	99	87.068	ENSIPUG00000013748	lig4	99	87.068	Ictalurus_punctatus
ENSPNAG00000028069	LIG4	100	64.803	ENSSTOG00000024303	LIG4	100	64.583	Ictidomys_tridecemlineatus
ENSPNAG00000028069	LIG4	100	64.074	ENSJJAG00000006750	Lig4	100	64.074	Jaculus_jaculus
ENSPNAG00000028069	LIG4	99	79.911	ENSKMAG00000001149	lig4	99	79.911	Kryptolebias_marmoratus
ENSPNAG00000028069	LIG4	91	80.314	ENSLBEG00000014578	lig4	99	80.314	Labrus_bergylta
ENSPNAG00000028069	LIG4	99	67.853	ENSLACG00000003282	LIG4	99	67.853	Latimeria_chalumnae
ENSPNAG00000028069	LIG4	99	74.362	ENSLOCG00000008901	lig4	97	74.362	Lepisosteus_oculatus
ENSPNAG00000028069	LIG4	100	62.842	ENSLAFG00000031152	LIG4	100	62.842	Loxodonta_africana
ENSPNAG00000028069	LIG4	100	64.693	ENSMFAG00000037235	LIG4	100	64.693	Macaca_fascicularis
ENSPNAG00000028069	LIG4	100	64.583	ENSMMUG00000008874	LIG4	100	64.583	Macaca_mulatta
ENSPNAG00000028069	LIG4	100	64.693	ENSMNEG00000023575	LIG4	100	64.693	Macaca_nemestrina
ENSPNAG00000028069	LIG4	100	64.732	ENSMLEG00000026720	LIG4	100	64.732	Mandrillus_leucophaeus
ENSPNAG00000028069	LIG4	99	82.274	ENSMAMG00000008472	lig4	98	82.274	Mastacembelus_armatus
ENSPNAG00000028069	LIG4	99	81.036	ENSMZEG00005001855	lig4	99	81.036	Maylandia_zebra
ENSPNAG00000028069	LIG4	99	66.518	ENSMGAG00000015532	LIG4	99	66.518	Meleagris_gallopavo
ENSPNAG00000028069	LIG4	99	63.234	ENSMOCG00000019000	Lig4	99	63.012	Microtus_ochrogaster
ENSPNAG00000028069	LIG4	99	80.156	ENSMMOG00000004390	lig4	99	80.156	Mola_mola
ENSPNAG00000028069	LIG4	100	64.513	ENSMODG00000025064	LIG4	100	64.880	Monodelphis_domestica
ENSPNAG00000028069	LIG4	99	81.828	ENSMALG00000008555	lig4	99	81.828	Monopterus_albus
ENSPNAG00000028069	LIG4	100	64.693	MGP_CAROLIEiJ_G0030809	Lig4	100	64.583	Mus_caroli
ENSPNAG00000028069	LIG4	100	64.254	ENSMUSG00000049717	Lig4	100	64.145	Mus_musculus
ENSPNAG00000028069	LIG4	100	64.583	MGP_PahariEiJ_G0021270	Lig4	100	64.583	Mus_pahari
ENSPNAG00000028069	LIG4	100	64.364	MGP_SPRETEiJ_G0031917	Lig4	100	64.254	Mus_spretus
ENSPNAG00000028069	LIG4	100	63.965	ENSMPUG00000018675	LIG4	100	63.965	Mustela_putorius_furo
ENSPNAG00000028069	LIG4	100	64.145	ENSMLUG00000001267	LIG4	100	64.145	Myotis_lucifugus
ENSPNAG00000028069	LIG4	100	64.583	ENSNGAG00000013258	Lig4	100	64.474	Nannospalax_galili
ENSPNAG00000028069	LIG4	99	81.585	ENSNBRG00000021252	lig4	98	81.585	Neolamprologus_brichardi
ENSPNAG00000028069	LIG4	100	64.294	ENSNLEG00000007888	LIG4	100	64.294	Nomascus_leucogenys
ENSPNAG00000028069	LIG4	100	63.487	ENSOPRG00000005765	LIG4	100	63.377	Ochotona_princeps
ENSPNAG00000028069	LIG4	100	63.527	ENSODEG00000019683	LIG4	100	63.527	Octodon_degus
ENSPNAG00000028069	LIG4	99	81.698	ENSONIG00000011969	lig4	98	81.698	Oreochromis_niloticus
ENSPNAG00000028069	LIG4	100	64.145	ENSOCUG00000015734	LIG4	100	64.145	Oryctolagus_cuniculus
ENSPNAG00000028069	LIG4	99	79.341	ENSORLG00000004041	lig4	99	79.341	Oryzias_latipes
ENSPNAG00000028069	LIG4	99	79.560	ENSORLG00020019607	lig4	99	79.560	Oryzias_latipes_hni
ENSPNAG00000028069	LIG4	99	79.231	ENSORLG00015017754	lig4	99	79.231	Oryzias_latipes_hsok
ENSPNAG00000028069	LIG4	75	84.024	ENSOMEG00000003459	lig4	98	84.024	Oryzias_melastigma
ENSPNAG00000028069	LIG4	100	64.254	ENSOGAG00000032120	LIG4	99	64.254	Otolemur_garnettii
ENSPNAG00000028069	LIG4	82	68.499	ENSOARG00000005590	LIG4	98	68.499	Ovis_aries
ENSPNAG00000028069	LIG4	100	64.474	ENSPPAG00000032998	LIG4	100	64.474	Pan_paniscus
ENSPNAG00000028069	LIG4	100	63.417	ENSPPRG00000017804	LIG4	100	63.417	Panthera_pardus
ENSPNAG00000028069	LIG4	100	63.308	ENSPTIG00000010051	LIG4	100	63.308	Panthera_tigris_altaica
ENSPNAG00000028069	LIG4	100	64.583	ENSPTRG00000006025	LIG4	100	64.583	Pan_troglodytes
ENSPNAG00000028069	LIG4	99	65.044	ENSPANG00000007562	LIG4	99	65.044	Papio_anubis
ENSPNAG00000028069	LIG4	99	78.936	ENSPKIG00000011645	lig4	98	78.936	Paramormyrops_kingsleyae
ENSPNAG00000028069	LIG4	99	68.854	ENSPSIG00000001504	LIG4	99	68.854	Pelodiscus_sinensis
ENSPNAG00000028069	LIG4	99	76.372	ENSPMGG00000013486	lig4	98	76.477	Periophthalmus_magnuspinnatus
ENSPNAG00000028069	LIG4	100	64.074	ENSPEMG00000000076	Lig4	100	63.965	Peromyscus_maniculatus_bairdii
ENSPNAG00000028069	LIG4	100	64.294	ENSPCIG00000021882	LIG4	100	64.294	Phascolarctos_cinereus
ENSPNAG00000028069	LIG4	99	82.438	ENSPFOG00000000797	lig4	98	82.517	Poecilia_formosa
ENSPNAG00000028069	LIG4	99	82.327	ENSPLAG00000001196	lig4	98	82.405	Poecilia_latipinna
ENSPNAG00000028069	LIG4	99	82.327	ENSPMEG00000021353	lig4	98	82.405	Poecilia_mexicana
ENSPNAG00000028069	LIG4	99	81.879	ENSPREG00000007323	lig4	98	81.960	Poecilia_reticulata
ENSPNAG00000028069	LIG4	100	64.145	ENSPPYG00000005540	LIG4	100	64.145	Pongo_abelii
ENSPNAG00000028069	LIG4	100	63.925	ENSPVAG00000016403	LIG4	100	63.706	Pteropus_vampyrus
ENSPNAG00000028069	LIG4	99	81.105	ENSPNYG00000009660	lig4	99	81.105	Pundamilia_nyererei
ENSPNAG00000028069	LIG4	100	64.803	ENSRNOG00000014605	Lig4	100	64.693	Rattus_norvegicus
ENSPNAG00000028069	LIG4	100	63.855	ENSRBIG00000039962	LIG4	100	63.855	Rhinopithecus_bieti
ENSPNAG00000028069	LIG4	100	64.622	ENSRROG00000006040	LIG4	100	64.622	Rhinopithecus_roxellana
ENSPNAG00000028069	LIG4	100	64.145	ENSSBOG00000019029	LIG4	100	64.145	Saimiri_boliviensis_boliviensis
ENSPNAG00000028069	LIG4	100	61.884	ENSSHAG00000009525	LIG4	100	62.254	Sarcophilus_harrisii
ENSPNAG00000028069	LIG4	99	80.713	ENSSFOG00015012835	lig4	99	80.713	Scleropages_formosus
ENSPNAG00000028069	LIG4	99	77.902	ENSSMAG00000011267	lig4	99	77.902	Scophthalmus_maximus
ENSPNAG00000028069	LIG4	99	81.556	ENSSDUG00000010343	lig4	98	81.556	Seriola_dumerili
ENSPNAG00000028069	LIG4	99	79.578	ENSSLDG00000003239	lig4	99	79.689	Seriola_lalandi_dorsalis
ENSPNAG00000028069	LIG4	99	63.687	ENSSARG00000006573	LIG4	99	63.687	Sorex_araneus
ENSPNAG00000028069	LIG4	92	69.405	ENSSPUG00000002444	LIG4	100	69.405	Sphenodon_punctatus
ENSPNAG00000028069	LIG4	99	80.825	ENSSPAG00000001609	lig4	99	80.825	Stegastes_partitus
ENSPNAG00000028069	LIG4	99	64.066	ENSSSCG00000009540	LIG4	99	64.066	Sus_scrofa
ENSPNAG00000028069	LIG4	99	66.407	ENSTGUG00000010795	LIG4	99	66.185	Taeniopygia_guttata
ENSPNAG00000028069	LIG4	99	80.333	ENSTRUG00000009984	lig4	99	80.333	Takifugu_rubripes
ENSPNAG00000028069	LIG4	99	78.906	ENSTNIG00000010348	lig4	99	79.129	Tetraodon_nigroviridis
ENSPNAG00000028069	LIG4	100	64.474	ENSTBEG00000017741	LIG4	100	64.474	Tupaia_belangeri
ENSPNAG00000028069	LIG4	100	64.294	ENSTTRG00000012660	LIG4	100	64.294	Tursiops_truncatus
ENSPNAG00000028069	LIG4	100	63.746	ENSUAMG00000003773	LIG4	100	63.417	Ursus_americanus
ENSPNAG00000028069	LIG4	99	67.186	ENSXETG00000002654	lig4	99	66.963	Xenopus_tropicalis
ENSPNAG00000028069	LIG4	99	81.879	ENSXCOG00000017401	lig4	98	81.960	Xiphophorus_couchianus
ENSPNAG00000028069	LIG4	99	82.215	ENSXMAG00000015142	lig4	98	82.294	Xiphophorus_maculatus