EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000028363 (Gene tree)
Gene ID: 108433891
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Minus strand
Length: 21721 bases
Position: chrKV575430.1:1149947-1171667
Accession: 108433891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000021277	EST1	PF10374.9	4.4e-24	1	1
ENSPNAP00000021277	EST1_DNA_bind	PF10373.9	3.3e-43	1	1
ENSPNAP00000021277	PIN_4	PF13638.6	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000032422	-	4875	XM_017708746	ENSPNAP00000021277	1094 (aa)	XP_017564235	UPI0008145E82

Gene Model

Click here to download ENSPNAG00000028363's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000028363's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000028363	smg5	100	78.831	ENSAPOG00000019690	smg5	100	79.097	Acanthochromis_polyacanthus
ENSPNAG00000028363	smg5	98	61.266	ENSAMEG00000014458	SMG5	100	61.045	Ailuropoda_melanoleuca
ENSPNAG00000028363	smg5	100	77.355	ENSACIG00000001353	smg5	99	76.757	Amphilophus_citrinellus
ENSPNAG00000028363	smg5	100	79.467	ENSAOCG00000019483	smg5	100	78.844	Amphiprion_ocellaris
ENSPNAG00000028363	smg5	100	79.556	ENSAPEG00000022949	smg5	100	78.933	Amphiprion_percula
ENSPNAG00000028363	smg5	100	77.140	ENSATEG00000005348	smg5	100	79.055	Anabas_testudineus
ENSPNAG00000028363	smg5	98	63.937	ENSAPLG00000010263	SMG5	100	62.374	Anas_platyrhynchos
ENSPNAG00000028363	smg5	100	77.045	ENSACLG00000009311	smg5	100	78.044	Astatotilapia_calliptera
ENSPNAG00000028363	smg5	100	92.350	ENSAMXG00000024616	smg5	100	91.257	Astyanax_mexicanus
ENSPNAG00000028363	smg5	95	47.679	ENSBTAG00000021747	-	88	50.000	Bos_taurus
ENSPNAG00000028363	smg5	99	61.722	ENSCAFG00000016839	SMG5	99	62.078	Canis_familiaris
ENSPNAG00000028363	smg5	99	61.722	ENSCAFG00020006061	SMG5	99	62.078	Canis_lupus_dingo
ENSPNAG00000028363	smg5	98	43.273	ENSCHIG00000006323	-	93	51.605	Capra_hircus
ENSPNAG00000028363	smg5	99	62.922	ENSTSYG00000004099	SMG5	99	62.602	Carlito_syrichta
ENSPNAG00000028363	smg5	97	47.477	ENSCAPG00000003631	SMG5	100	48.184	Cavia_aperea
ENSPNAG00000028363	smg5	52	76.173	ENSCHOG00000008741	-	57	76.173	Choloepus_hoffmanni
ENSPNAG00000028363	smg5	94	62.286	ENSCPBG00000025848	SMG5	100	62.286	Chrysemys_picta_bellii
ENSPNAG00000028363	smg5	73	38.889	ENSCING00000008706	-	83	38.889	Ciona_intestinalis
ENSPNAG00000028363	smg5	99	62.727	ENSCGRG00001006336	Smg5	99	62.204	Cricetulus_griseus_chok1gshd
ENSPNAG00000028363	smg5	98	62.477	ENSCGRG00000005111	Smg5	100	61.909	Cricetulus_griseus_crigri
ENSPNAG00000028363	smg5	100	76.937	ENSCSEG00000014220	smg5	100	76.923	Cynoglossus_semilaevis
ENSPNAG00000028363	smg5	100	69.565	ENSCVAG00000000529	smg5	99	69.022	Cyprinodon_variegatus
ENSPNAG00000028363	smg5	100	82.640	ENSDARG00000041481	smg5	100	81.826	Danio_rerio
ENSPNAG00000028363	smg5	74	39.578	ENSDNOG00000039862	-	87	39.578	Dasypus_novemcinctus
ENSPNAG00000028363	smg5	99	62.681	ENSDORG00000010382	Smg5	99	62.376	Dipodomys_ordii
ENSPNAG00000028363	smg5	64	32.124	FBgn0019890	Smg5	65	32.124	Drosophila_melanogaster
ENSPNAG00000028363	smg5	74	83.495	ENSETEG00000010336	SMG5	82	83.495	Echinops_telfairi
ENSPNAG00000028363	smg5	64	55.443	ENSEBUG00000003739	smg5	91	49.702	Eptatretus_burgeri
ENSPNAG00000028363	smg5	67	79.310	ENSEEUG00000012690	SMG5	75	79.310	Erinaceus_europaeus
ENSPNAG00000028363	smg5	100	80.464	ENSELUG00000012585	smg5	100	79.464	Esox_lucius
ENSPNAG00000028363	smg5	99	62.113	ENSFCAG00000011783	SMG5	99	62.170	Felis_catus
ENSPNAG00000028363	smg5	59	64.778	ENSFALG00000001166	-	97	62.348	Ficedula_albicollis
ENSPNAG00000028363	smg5	98	62.732	ENSFDAG00000017388	SMG5	100	62.280	Fukomys_damarensis
ENSPNAG00000028363	smg5	87	85.079	ENSFHEG00000013939	smg5	95	85.079	Fundulus_heteroclitus
ENSPNAG00000028363	smg5	100	74.716	ENSGMOG00000007310	smg5	100	75.993	Gadus_morhua
ENSPNAG00000028363	smg5	100	63.816	ENSGALG00000029918	-	100	62.602	Gallus_gallus
ENSPNAG00000028363	smg5	92	85.623	ENSGAFG00000021691	smg5	99	85.623	Gambusia_affinis
ENSPNAG00000028363	smg5	100	76.507	ENSGACG00000013142	smg5	100	77.482	Gasterosteus_aculeatus
ENSPNAG00000028363	smg5	99	64.176	ENSGAGG00000016131	SMG5	99	63.006	Gopherus_agassizii
ENSPNAG00000028363	smg5	100	76.534	ENSHBUG00000008654	smg5	100	78.083	Haplochromis_burtoni
ENSPNAG00000028363	smg5	99	62.963	ENSHGLG00000019152	SMG5	99	62.170	Heterocephalus_glaber_female
ENSPNAG00000028363	smg5	91	63.147	ENSHGLG00100015948	SMG5	99	62.274	Heterocephalus_glaber_male
ENSPNAG00000028363	smg5	87	78.378	ENSHCOG00000010229	smg5	92	82.885	Hippocampus_comes
ENSPNAG00000028363	smg5	100	85.108	ENSIPUG00000006624	Smg5	100	85.998	Ictalurus_punctatus
ENSPNAG00000028363	smg5	99	62.761	ENSSTOG00000001780	SMG5	99	62.681	Ictidomys_tridecemlineatus
ENSPNAG00000028363	smg5	99	62.613	ENSJJAG00000022763	Smg5	99	62.692	Jaculus_jaculus
ENSPNAG00000028363	smg5	100	78.330	ENSKMAG00000014586	smg5	100	78.774	Kryptolebias_marmoratus
ENSPNAG00000028363	smg5	100	78.635	ENSLBEG00000002145	smg5	100	78.831	Labrus_bergylta
ENSPNAG00000028363	smg5	99	58.047	ENSLACG00000010521	SMG5	99	58.702	Latimeria_chalumnae
ENSPNAG00000028363	smg5	100	71.454	ENSLOCG00000008380	smg5	99	74.973	Lepisosteus_oculatus
ENSPNAG00000028363	smg5	99	62.044	ENSLAFG00000006241	SMG5	99	62.100	Loxodonta_africana
ENSPNAG00000028363	smg5	99	60.854	ENSMMUG00000000090	SMG5	99	62.534	Macaca_mulatta
ENSPNAG00000028363	smg5	99	57.828	ENSMLEG00000041192	SMG5	99	57.402	Mandrillus_leucophaeus
ENSPNAG00000028363	smg5	100	77.966	ENSMAMG00000010683	smg5	100	78.591	Mastacembelus_armatus
ENSPNAG00000028363	smg5	100	73.514	ENSMZEG00005015815	smg5	99	73.514	Maylandia_zebra
ENSPNAG00000028363	smg5	65	69.391	ENSMZEG00005016543	smg5	100	69.668	Maylandia_zebra
ENSPNAG00000028363	smg5	99	62.228	ENSMOCG00000016590	Smg5	99	61.909	Microtus_ochrogaster
ENSPNAG00000028363	smg5	100	75.712	ENSMMOG00000017199	smg5	100	75.267	Mola_mola
ENSPNAG00000028363	smg5	69	35.580	ENSMODG00000004735	-	85	35.676	Monodelphis_domestica
ENSPNAG00000028363	smg5	88	62.319	ENSMODG00000016901	SMG5	98	62.037	Monodelphis_domestica
ENSPNAG00000028363	smg5	74	34.739	ENSMODG00000004532	-	89	34.739	Monodelphis_domestica
ENSPNAG00000028363	smg5	74	33.738	ENSMODG00000010675	-	93	33.738	Monodelphis_domestica
ENSPNAG00000028363	smg5	70	35.079	ENSMODG00000004511	-	77	35.079	Monodelphis_domestica
ENSPNAG00000028363	smg5	100	77.442	ENSMALG00000010375	smg5	100	76.738	Monopterus_albus
ENSPNAG00000028363	smg5	99	62.636	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSPNAG00000028363	smg5	99	62.636	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSPNAG00000028363	smg5	99	62.329	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSPNAG00000028363	smg5	99	62.636	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSPNAG00000028363	smg5	94	60.853	ENSMPUG00000004546	SMG5	100	60.769	Mustela_putorius_furo
ENSPNAG00000028363	smg5	99	61.531	ENSNGAG00000020706	Smg5	99	62.443	Nannospalax_galili
ENSPNAG00000028363	smg5	82	48.605	ENSNGAG00000012101	-	95	48.605	Nannospalax_galili
ENSPNAG00000028363	smg5	97	71.667	ENSNBRG00000004332	smg5	98	71.495	Neolamprologus_brichardi
ENSPNAG00000028363	smg5	99	61.826	ENSMEUG00000012834	SMG5	99	61.580	Notamacropus_eugenii
ENSPNAG00000028363	smg5	99	62.192	ENSOPRG00000009152	SMG5	99	61.840	Ochotona_princeps
ENSPNAG00000028363	smg5	99	63.105	ENSODEG00000012237	SMG5	99	62.808	Octodon_degus
ENSPNAG00000028363	smg5	100	77.768	ENSONIG00000008632	smg5	100	78.705	Oreochromis_niloticus
ENSPNAG00000028363	smg5	79	45.499	ENSOCUG00000023338	-	85	45.499	Oryctolagus_cuniculus
ENSPNAG00000028363	smg5	98	62.756	ENSOCUG00000012886	SMG5	100	62.523	Oryctolagus_cuniculus
ENSPNAG00000028363	smg5	100	76.203	ENSORLG00000016239	smg5	100	76.178	Oryzias_latipes
ENSPNAG00000028363	smg5	100	75.755	ENSORLG00020013127	smg5	100	76.157	Oryzias_latipes_hni
ENSPNAG00000028363	smg5	100	75.644	ENSORLG00015019014	smg5	100	76.046	Oryzias_latipes_hsok
ENSPNAG00000028363	smg5	83	75.372	ENSOMEG00000021330	smg5	92	75.372	Oryzias_melastigma
ENSPNAG00000028363	smg5	87	51.807	ENSOARG00000011963	-	93	51.807	Ovis_aries
ENSPNAG00000028363	smg5	98	61.481	ENSPPRG00000011901	SMG5	100	61.874	Panthera_pardus
ENSPNAG00000028363	smg5	97	58.271	ENSPTIG00000007892	SMG5	98	58.801	Panthera_tigris_altaica
ENSPNAG00000028363	smg5	86	78.797	ENSPTRG00000049282	-	88	78.797	Pan_troglodytes
ENSPNAG00000028363	smg5	100	78.727	ENSPKIG00000009402	smg5	100	78.545	Paramormyrops_kingsleyae
ENSPNAG00000028363	smg5	98	64.504	ENSPSIG00000015198	SMG5	100	63.485	Pelodiscus_sinensis
ENSPNAG00000028363	smg5	100	71.737	ENSPMGG00000010465	smg5	100	71.390	Periophthalmus_magnuspinnatus
ENSPNAG00000028363	smg5	99	62.545	ENSPEMG00000001819	Smg5	99	61.810	Peromyscus_maniculatus_bairdii
ENSPNAG00000028363	smg5	85	64.339	ENSPMAG00000000410	smg5	91	64.268	Petromyzon_marinus
ENSPNAG00000028363	smg5	99	62.752	ENSPCIG00000018938	SMG5	99	62.013	Phascolarctos_cinereus
ENSPNAG00000028363	smg5	100	78.431	ENSPFOG00000010191	smg5	100	78.910	Poecilia_formosa
ENSPNAG00000028363	smg5	100	78.265	ENSPLAG00000009332	smg5	100	78.910	Poecilia_latipinna
ENSPNAG00000028363	smg5	100	78.520	ENSPMEG00000014105	smg5	100	79.178	Poecilia_mexicana
ENSPNAG00000028363	smg5	100	78.712	ENSPREG00000017713	smg5	100	79.267	Poecilia_reticulata
ENSPNAG00000028363	smg5	82	74.786	ENSPCAG00000008412	SMG5	87	74.786	Procavia_capensis
ENSPNAG00000028363	smg5	99	60.838	ENSPCOG00000004741	SMG5	99	62.625	Propithecus_coquereli
ENSPNAG00000028363	smg5	99	56.752	ENSPVAG00000016748	SMG5	99	56.612	Pteropus_vampyrus
ENSPNAG00000028363	smg5	100	76.021	ENSPNYG00000013397	smg5	100	78.073	Pundamilia_nyererei
ENSPNAG00000028363	smg5	99	62.340	ENSRNOG00000019590	Smg5	99	62.147	Rattus_norvegicus
ENSPNAG00000028363	smg5	98	62.072	ENSSHAG00000014163	SMG5	100	61.694	Sarcophilus_harrisii
ENSPNAG00000028363	smg5	70	36.776	ENSSHAG00000000561	-	90	36.364	Sarcophilus_harrisii
ENSPNAG00000028363	smg5	72	41.446	ENSSHAG00000009572	-	81	41.446	Sarcophilus_harrisii
ENSPNAG00000028363	smg5	57	35.177	ENSSHAG00000000935	-	88	35.664	Sarcophilus_harrisii
ENSPNAG00000028363	smg5	100	79.550	ENSSFOG00015024175	smg5	100	79.276	Scleropages_formosus
ENSPNAG00000028363	smg5	100	79.341	ENSSMAG00000013059	smg5	100	79.590	Scophthalmus_maximus
ENSPNAG00000028363	smg5	100	78.433	ENSSDUG00000007122	smg5	100	78.994	Seriola_dumerili
ENSPNAG00000028363	smg5	100	78.975	ENSSLDG00000011418	smg5	100	79.362	Seriola_lalandi_dorsalis
ENSPNAG00000028363	smg5	64	68.705	ENSSARG00000012484	SMG5	94	68.705	Sorex_araneus
ENSPNAG00000028363	smg5	94	62.440	ENSSPUG00000002260	SMG5	100	62.631	Sphenodon_punctatus
ENSPNAG00000028363	smg5	100	79.204	ENSSPAG00000014266	smg5	100	79.541	Stegastes_partitus
ENSPNAG00000028363	smg5	99	48.493	ENSSSCG00000039308	-	99	48.499	Sus_scrofa
ENSPNAG00000028363	smg5	99	59.128	ENSSSCG00000006490	-	100	61.442	Sus_scrofa
ENSPNAG00000028363	smg5	99	65.174	ENSTGUG00000003748	-	99	63.645	Taeniopygia_guttata
ENSPNAG00000028363	smg5	100	74.291	ENSTRUG00000012580	smg5	100	75.089	Takifugu_rubripes
ENSPNAG00000028363	smg5	100	73.810	ENSTNIG00000010303	smg5	100	73.894	Tetraodon_nigroviridis
ENSPNAG00000028363	smg5	53	84.729	ENSTBEG00000002777	SMG5	58	84.729	Tupaia_belangeri
ENSPNAG00000028363	smg5	99	58.856	ENSTTRG00000001401	SMG5	99	58.808	Tursiops_truncatus
ENSPNAG00000028363	smg5	99	61.137	ENSUAMG00000013721	SMG5	99	61.797	Ursus_americanus
ENSPNAG00000028363	smg5	92	75.430	ENSUMAG00000018041	SMG5	96	75.181	Ursus_maritimus
ENSPNAG00000028363	smg5	55	71.287	ENSVPAG00000009446	SMG5	99	54.680	Vicugna_pacos
ENSPNAG00000028363	smg5	99	61.749	ENSVVUG00000005887	SMG5	99	62.113	Vulpes_vulpes
ENSPNAG00000028363	smg5	79	55.760	ENSXETG00000033791	SMG5	99	54.913	Xenopus_tropicalis
ENSPNAG00000028363	smg5	81	87.027	ENSXCOG00000004379	smg5	99	87.912	Xiphophorus_couchianus
ENSPNAG00000028363	smg5	100	78.265	ENSXMAG00000013499	smg5	100	78.820	Xiphophorus_maculatus