EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNAG00000028442 (Gene tree)
Gene ID: 108435484
Gene Symbol: prdm1a
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR/SET domain 1
Gene Type: protein_coding
Species: Pygocentrus_nattereri
Status: putative
Strand: Plus strand
Length: 10444 bases
Position: chrKV575471.1:190004-200447
Accession: 108435484
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNAP00000021330	zf-C2H2	PF00096.26	1.3e-18	1	3
ENSPNAP00000021330	zf-C2H2	PF00096.26	1.3e-18	2	3
ENSPNAP00000021330	zf-C2H2	PF00096.26	1.3e-18	3	3
ENSPNAP00000021330	zf-met	PF12874.7	7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNAT00000040498	-	2265	XM_017711361	ENSPNAP00000021330	754 (aa)	XP_017566850	-

Gene Model

Click here to download ENSPNAG00000028442's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNAG00000028442's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNAG00000028442	prdm1a	95	46.204	ENSAPOG00000014135	-	94	46.204	Acanthochromis_polyacanthus
ENSPNAG00000028442	prdm1a	92	46.917	ENSACIG00000009747	-	93	44.845	Amphilophus_citrinellus
ENSPNAG00000028442	prdm1a	75	39.968	ENSACIG00000014426	prdm1b	90	39.968	Amphilophus_citrinellus
ENSPNAG00000028442	prdm1a	56	59.155	ENSAOCG00000002230	prdm1b	94	42.785	Amphiprion_ocellaris
ENSPNAG00000028442	prdm1a	69	54.971	ENSAPEG00000019826	prdm1b	92	44.041	Amphiprion_percula
ENSPNAG00000028442	prdm1a	96	43.990	ENSATEG00000014034	-	96	43.990	Anabas_testudineus
ENSPNAG00000028442	prdm1a	94	61.479	ENSATEG00000021017	prdm1a	99	62.162	Anabas_testudineus
ENSPNAG00000028442	prdm1a	75	41.903	ENSACLG00000005487	prdm1b	84	42.734	Astatotilapia_calliptera
ENSPNAG00000028442	prdm1a	99	58.463	ENSCSEG00000009707	prdm1a	99	61.240	Cynoglossus_semilaevis
ENSPNAG00000028442	prdm1a	99	55.734	ENSCVAG00000019081	prdm1a	99	59.744	Cyprinodon_variegatus
ENSPNAG00000028442	prdm1a	73	41.753	ENSFHEG00000019848	prdm1b	86	41.753	Fundulus_heteroclitus
ENSPNAG00000028442	prdm1a	92	45.254	ENSGAFG00000013012	-	93	45.539	Gambusia_affinis
ENSPNAG00000028442	prdm1a	88	43.213	ENSGAFG00000016191	prdm1b	89	43.213	Gambusia_affinis
ENSPNAG00000028442	prdm1a	89	42.120	ENSGACG00000002716	prdm1b	98	41.746	Gasterosteus_aculeatus
ENSPNAG00000028442	prdm1a	75	42.159	ENSHBUG00000001475	prdm1b	92	42.159	Haplochromis_burtoni
ENSPNAG00000028442	prdm1a	75	43.493	ENSHCOG00000003617	prdm1b	89	43.493	Hippocampus_comes
ENSPNAG00000028442	prdm1a	70	51.765	ENSIPUG00000013740	prdm1b	98	35.046	Ictalurus_punctatus
ENSPNAG00000028442	prdm1a	75	40.789	ENSKMAG00000011218	prdm1b	89	41.776	Kryptolebias_marmoratus
ENSPNAG00000028442	prdm1a	96	42.681	ENSKMAG00000016247	-	99	42.681	Kryptolebias_marmoratus
ENSPNAG00000028442	prdm1a	96	59.254	ENSKMAG00000017597	prdm1a	97	59.974	Kryptolebias_marmoratus
ENSPNAG00000028442	prdm1a	92	41.492	ENSLBEG00000020955	prdm1b	91	44.012	Labrus_bergylta
ENSPNAG00000028442	prdm1a	95	43.544	ENSLOCG00000004978	prdm1b	97	43.230	Lepisosteus_oculatus
ENSPNAG00000028442	prdm1a	75	42.275	ENSMZEG00005026361	prdm1b	86	42.132	Maylandia_zebra
ENSPNAG00000028442	prdm1a	75	42.691	ENSMMOG00000013458	prdm1b	92	42.691	Mola_mola
ENSPNAG00000028442	prdm1a	90	44.928	ENSMALG00000000462	-	93	44.928	Monopterus_albus
ENSPNAG00000028442	prdm1a	76	39.344	ENSMALG00000011410	prdm1b	93	41.137	Monopterus_albus
ENSPNAG00000028442	prdm1a	100	44.431	ENSONIG00000014709	-	100	44.900	Oreochromis_niloticus
ENSPNAG00000028442	prdm1a	67	59.394	ENSONIG00000013583	prdm1b	72	59.394	Oreochromis_niloticus
ENSPNAG00000028442	prdm1a	56	60.294	ENSORLG00000010025	prdm1b	68	60.294	Oryzias_latipes
ENSPNAG00000028442	prdm1a	58	61.194	ENSORLG00015009022	prdm1b	69	61.194	Oryzias_latipes_hsok
ENSPNAG00000028442	prdm1a	56	63.889	ENSPKIG00000022335	prdm1b	92	41.890	Paramormyrops_kingsleyae
ENSPNAG00000028442	prdm1a	86	44.509	ENSPFOG00000003103	prdm1b	99	44.509	Poecilia_formosa
ENSPNAG00000028442	prdm1a	56	61.111	ENSPLAG00000018491	prdm1b	62	61.111	Poecilia_latipinna
ENSPNAG00000028442	prdm1a	56	61.111	ENSPMEG00000007869	prdm1b	89	41.556	Poecilia_mexicana
ENSPNAG00000028442	prdm1a	71	53.403	ENSPREG00000011327	prdm1b	62	61.111	Poecilia_reticulata
ENSPNAG00000028442	prdm1a	96	55.528	ENSPVAG00000011732	PRDM1	99	55.779	Pteropus_vampyrus
ENSPNAG00000028442	prdm1a	90	42.936	ENSSFOG00015021896	prdm1b	94	42.641	Scleropages_formosus
ENSPNAG00000028442	prdm1a	96	44.034	ENSSMAG00000017518	-	99	44.034	Scophthalmus_maximus
ENSPNAG00000028442	prdm1a	92	45.211	ENSSDUG00000000524	-	93	45.211	Seriola_dumerili
ENSPNAG00000028442	prdm1a	75	42.140	ENSSDUG00000020610	prdm1b	89	42.140	Seriola_dumerili
ENSPNAG00000028442	prdm1a	92	44.615	ENSSLDG00000001957	-	93	44.615	Seriola_lalandi_dorsalis
ENSPNAG00000028442	prdm1a	88	43.822	ENSSLDG00000021973	prdm1b	91	43.822	Seriola_lalandi_dorsalis
ENSPNAG00000028442	prdm1a	91	45.932	ENSSPAG00000009830	-	92	45.932	Stegastes_partitus
ENSPNAG00000028442	prdm1a	53	59.155	ENSSPAG00000000803	prdm1b	70	59.155	Stegastes_partitus
ENSPNAG00000028442	prdm1a	79	59.877	ENSTNIG00000003926	prdm1a	99	60.550	Tetraodon_nigroviridis
ENSPNAG00000028442	prdm1a	89	43.154	ENSXCOG00000018920	prdm1b	93	43.546	Xiphophorus_couchianus
ENSPNAG00000028442	prdm1a	88	43.497	ENSXMAG00000016765	prdm1b	90	41.147	Xiphophorus_maculatus