EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000000026 (Gene tree)
Gene ID: 102200778
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 36629 bases
Position: chrJH419206.1:2269821-2306449
Accession: 102200778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000000034	RNA_pol_Rpb1_5	PF04998.17	6.2e-100	1	1
ENSPNYP00000000035	RNA_pol_Rpb1_5	PF04998.17	6.5e-100	1	1
ENSPNYP00000000035	RNA_pol_Rpb1_4	PF05000.17	7.5e-21	1	1
ENSPNYP00000000034	RNA_pol_Rpb1_4	PF05000.17	9.7e-21	1	1
ENSPNYP00000000034	RNA_pol_Rpb1_2	PF00623.20	1.2e-67	1	1
ENSPNYP00000000035	RNA_pol_Rpb1_2	PF00623.20	7.5e-26	1	1
ENSPNYP00000000034	RNA_pol_Rpb1_3	PF04983.18	4.5e-37	1	1
ENSPNYP00000000035	RNA_pol_Rpb1_3	PF04983.18	9.8e-33	1	1
ENSPNYP00000000034	RNA_pol_Rpb1_1	PF04997.12	4.1e-25	1	1
ENSPNYP00000000035	RNA_pol_Rpb1_1	PF04997.12	8.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000000035	-	5489	XM_005719411	ENSPNYP00000000034	1685 (aa)	XP_005719468	UPI0006AA6EFB
ENSPNYT00000000036	-	4683	-	ENSPNYP00000000035	1560 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000000026's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000000026's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000000026	polr1a	73	44.248	ENSPNYG00000020987	polr3a	67	44.248

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000000026	polr1a	100	65.665	ENSG00000068654	POLR1A	100	65.933	Homo_sapiens
ENSPNYG00000000026	polr1a	69	88.245	ENSAPOG00000017945	polr1a	99	88.245	Acanthochromis_polyacanthus
ENSPNYG00000000026	polr1a	100	65.972	ENSAMEG00000005807	POLR1A	100	69.113	Ailuropoda_melanoleuca
ENSPNYG00000000026	polr1a	100	84.793	ENSACIG00000022147	polr1a	100	84.861	Amphilophus_citrinellus
ENSPNYG00000000026	polr1a	100	86.288	ENSAOCG00000017336	polr1a	100	87.814	Amphiprion_ocellaris
ENSPNYG00000000026	polr1a	100	86.288	ENSAPEG00000016105	polr1a	100	86.887	Amphiprion_percula
ENSPNYG00000000026	polr1a	100	87.108	ENSATEG00000016773	polr1a	100	87.167	Anabas_testudineus
ENSPNYG00000000026	polr1a	85	67.255	ENSAPLG00000013871	POLR1A	99	67.505	Anas_platyrhynchos
ENSPNYG00000000026	polr1a	99	64.980	ENSACAG00000012141	POLR1A	99	64.863	Anolis_carolinensis
ENSPNYG00000000026	polr1a	100	64.835	ENSANAG00000033927	POLR1A	100	65.411	Aotus_nancymaae
ENSPNYG00000000026	polr1a	100	89.657	ENSACLG00000020541	polr1a	100	89.657	Astatotilapia_calliptera
ENSPNYG00000000026	polr1a	100	66.048	ENSBTAG00000006481	POLR1A	100	66.048	Bos_taurus
ENSPNYG00000000026	polr1a	99	38.644	WBGene00012999	rpoa-1	98	38.842	Caenorhabditis_elegans
ENSPNYG00000000026	polr1a	100	64.968	ENSCJAG00000019547	POLR1A	100	65.469	Callithrix_jacchus
ENSPNYG00000000026	polr1a	100	66.067	ENSCAFG00000007613	POLR1A	100	66.241	Canis_familiaris
ENSPNYG00000000026	polr1a	98	72.222	ENSCAFG00020014752	POLR1A	100	66.088	Canis_lupus_dingo
ENSPNYG00000000026	polr1a	100	66.027	ENSCHIG00000018204	POLR1A	100	65.734	Capra_hircus
ENSPNYG00000000026	polr1a	100	65.180	ENSTSYG00000002761	POLR1A	100	65.389	Carlito_syrichta
ENSPNYG00000000026	polr1a	97	62.493	ENSCAPG00000010132	POLR1A	100	63.123	Cavia_aperea
ENSPNYG00000000026	polr1a	100	65.661	ENSCPOG00000012350	POLR1A	100	66.395	Cavia_porcellus
ENSPNYG00000000026	polr1a	100	65.220	ENSCCAG00000019839	POLR1A	100	65.721	Cebus_capucinus
ENSPNYG00000000026	polr1a	100	65.683	ENSCATG00000029786	POLR1A	100	65.933	Cercocebus_atys
ENSPNYG00000000026	polr1a	100	65.152	ENSCLAG00000005187	POLR1A	100	65.975	Chinchilla_lanigera
ENSPNYG00000000026	polr1a	100	65.394	ENSCSAG00000016251	POLR1A	100	65.187	Chlorocebus_sabaeus
ENSPNYG00000000026	polr1a	99	66.492	ENSCPBG00000001115	POLR1A	99	66.667	Chrysemys_picta_bellii
ENSPNYG00000000026	polr1a	99	47.243	ENSCSAVG00000007184	-	90	56.040	Ciona_savignyi
ENSPNYG00000000026	polr1a	100	62.984	ENSCANG00000031785	POLR1A	100	62.773	Colobus_angolensis_palliatus
ENSPNYG00000000026	polr1a	96	66.088	ENSCGRG00001006651	Polr1a	100	60.967	Cricetulus_griseus_chok1gshd
ENSPNYG00000000026	polr1a	65	63.460	ENSCGRG00000010834	Polr1a	100	63.811	Cricetulus_griseus_crigri
ENSPNYG00000000026	polr1a	100	77.810	ENSCSEG00000020190	polr1a	100	78.046	Cynoglossus_semilaevis
ENSPNYG00000000026	polr1a	100	81.235	ENSCVAG00000020941	polr1a	100	81.529	Cyprinodon_variegatus
ENSPNYG00000000026	polr1a	100	72.685	ENSDARG00000098375	polr1a	100	72.567	Danio_rerio
ENSPNYG00000000026	polr1a	100	62.899	ENSDNOG00000010829	POLR1A	100	62.957	Dasypus_novemcinctus
ENSPNYG00000000026	polr1a	100	65.145	ENSDORG00000008298	Polr1a	100	64.855	Dipodomys_ordii
ENSPNYG00000000026	polr1a	79	44.535	FBgn0019938	RpI1	99	43.254	Drosophila_melanogaster
ENSPNYG00000000026	polr1a	72	87.500	ENSETEG00000000412	-	72	87.500	Echinops_telfairi
ENSPNYG00000000026	polr1a	89	46.746	ENSEBUG00000005667	-	99	46.889	Eptatretus_burgeri
ENSPNYG00000000026	polr1a	100	65.453	ENSEASG00005001625	POLR1A	100	66.107	Equus_asinus_asinus
ENSPNYG00000000026	polr1a	100	65.569	ENSECAG00000036306	-	99	69.979	Equus_caballus
ENSPNYG00000000026	polr1a	100	65.569	ENSECAG00000030510	-	99	69.979	Equus_caballus
ENSPNYG00000000026	polr1a	100	65.569	ENSECAG00000010092	POLR1A	99	69.979	Equus_caballus
ENSPNYG00000000026	polr1a	85	76.975	ENSEEUG00000000676	POLR1A	84	76.975	Erinaceus_europaeus
ENSPNYG00000000026	polr1a	100	74.297	ENSELUG00000012769	polr1a	99	74.590	Esox_lucius
ENSPNYG00000000026	polr1a	100	65.356	ENSFCAG00000008966	POLR1A	100	66.125	Felis_catus
ENSPNYG00000000026	polr1a	99	65.200	ENSFALG00000010082	POLR1A	99	65.865	Ficedula_albicollis
ENSPNYG00000000026	polr1a	100	65.295	ENSFDAG00000013726	POLR1A	100	65.165	Fukomys_damarensis
ENSPNYG00000000026	polr1a	100	78.842	ENSFHEG00000005996	polr1a	100	78.533	Fundulus_heteroclitus
ENSPNYG00000000026	polr1a	100	69.139	ENSGMOG00000002230	polr1a	100	69.267	Gadus_morhua
ENSPNYG00000000026	polr1a	89	63.566	ENSGALG00000038160	-	99	63.713	Gallus_gallus
ENSPNYG00000000026	polr1a	100	81.158	ENSGAFG00000015266	polr1a	100	81.571	Gambusia_affinis
ENSPNYG00000000026	polr1a	100	80.486	ENSGACG00000018791	polr1a	100	80.602	Gasterosteus_aculeatus
ENSPNYG00000000026	polr1a	89	67.808	ENSGAGG00000004984	-	95	72.215	Gopherus_agassizii
ENSPNYG00000000026	polr1a	100	65.723	ENSGGOG00000001788	POLR1A	100	65.991	Gorilla_gorilla
ENSPNYG00000000026	polr1a	90	98.582	ENSHBUG00000020021	polr1a	100	98.582	Haplochromis_burtoni
ENSPNYG00000000026	polr1a	100	66.299	ENSHGLG00000006334	POLR1A	100	66.280	Heterocephalus_glaber_female
ENSPNYG00000000026	polr1a	100	66.067	ENSHGLG00100006614	POLR1A	100	66.049	Heterocephalus_glaber_male
ENSPNYG00000000026	polr1a	100	77.155	ENSHCOG00000003345	polr1a	100	76.841	Hippocampus_comes
ENSPNYG00000000026	polr1a	100	71.495	ENSIPUG00000013174	polr1a	100	71.512	Ictalurus_punctatus
ENSPNYG00000000026	polr1a	99	65.558	ENSSTOG00000012580	POLR1A	100	65.159	Ictidomys_tridecemlineatus
ENSPNYG00000000026	polr1a	100	65.933	ENSJJAG00000013113	Polr1a	100	65.630	Jaculus_jaculus
ENSPNYG00000000026	polr1a	100	85.130	ENSKMAG00000007399	polr1a	100	85.130	Kryptolebias_marmoratus
ENSPNYG00000000026	polr1a	94	85.950	ENSLBEG00000015401	polr1a	99	86.380	Labrus_bergylta
ENSPNYG00000000026	polr1a	53	70.499	ENSLACG00000003218	polr1a	100	70.499	Latimeria_chalumnae
ENSPNYG00000000026	polr1a	100	71.528	ENSLOCG00000010881	polr1a	100	71.138	Lepisosteus_oculatus
ENSPNYG00000000026	polr1a	100	65.603	ENSLAFG00000014948	POLR1A	100	65.934	Loxodonta_africana
ENSPNYG00000000026	polr1a	100	65.394	ENSMFAG00000046097	POLR1A	100	65.875	Macaca_fascicularis
ENSPNYG00000000026	polr1a	100	65.394	ENSMMUG00000015815	POLR1A	100	65.875	Macaca_mulatta
ENSPNYG00000000026	polr1a	100	65.394	ENSMNEG00000043313	POLR1A	100	65.875	Macaca_nemestrina
ENSPNYG00000000026	polr1a	100	65.046	ENSMLEG00000042428	POLR1A	100	65.527	Mandrillus_leucophaeus
ENSPNYG00000000026	polr1a	100	85.833	ENSMAMG00000016565	polr1a	100	85.833	Mastacembelus_armatus
ENSPNYG00000000026	polr1a	100	99.703	ENSMZEG00005004915	polr1a	100	99.703	Maylandia_zebra
ENSPNYG00000000026	polr1a	99	63.268	ENSMGAG00000013111	POLR1A	99	63.194	Meleagris_gallopavo
ENSPNYG00000000026	polr1a	91	65.127	ENSMAUG00000008497	Polr1a	100	64.947	Mesocricetus_auratus
ENSPNYG00000000026	polr1a	100	65.396	ENSMICG00000000757	POLR1A	100	65.585	Microcebus_murinus
ENSPNYG00000000026	polr1a	100	65.565	ENSMOCG00000000122	Polr1a	100	65.338	Microtus_ochrogaster
ENSPNYG00000000026	polr1a	100	80.778	ENSMMOG00000010216	polr1a	100	80.588	Mola_mola
ENSPNYG00000000026	polr1a	100	61.921	ENSMODG00000009335	POLR1A	100	62.207	Monodelphis_domestica
ENSPNYG00000000026	polr1a	100	84.956	ENSMALG00000013363	polr1a	100	85.782	Monopterus_albus
ENSPNYG00000000026	polr1a	100	64.965	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.757	Mus_caroli
ENSPNYG00000000026	polr1a	100	64.907	ENSMUSG00000049553	Polr1a	100	64.682	Mus_musculus
ENSPNYG00000000026	polr1a	100	64.818	MGP_PahariEiJ_G0022230	Polr1a	100	65.338	Mus_pahari
ENSPNYG00000000026	polr1a	100	63.419	MGP_SPRETEiJ_G0029499	Polr1a	100	63.879	Mus_spretus
ENSPNYG00000000026	polr1a	100	65.529	ENSMPUG00000009135	POLR1A	100	65.951	Mustela_putorius_furo
ENSPNYG00000000026	polr1a	100	65.648	ENSMLUG00000015723	POLR1A	100	65.994	Myotis_lucifugus
ENSPNYG00000000026	polr1a	100	65.663	ENSNGAG00000017907	Polr1a	100	65.478	Nannospalax_galili
ENSPNYG00000000026	polr1a	100	99.169	ENSNBRG00000000519	polr1a	100	99.169	Neolamprologus_brichardi
ENSPNYG00000000026	polr1a	100	64.018	ENSNLEG00000002264	POLR1A	100	64.245	Nomascus_leucogenys
ENSPNYG00000000026	polr1a	76	81.102	ENSMEUG00000011665	-	75	81.102	Notamacropus_eugenii
ENSPNYG00000000026	polr1a	99	60.898	ENSOPRG00000008269	POLR1A	95	72.340	Ochotona_princeps
ENSPNYG00000000026	polr1a	100	65.991	ENSODEG00000003542	POLR1A	100	66.473	Octodon_degus
ENSPNYG00000000026	polr1a	100	96.881	ENSONIG00000015895	polr1a	100	96.881	Oreochromis_niloticus
ENSPNYG00000000026	polr1a	100	65.438	ENSOCUG00000010138	POLR1A	100	66.570	Oryctolagus_cuniculus
ENSPNYG00000000026	polr1a	100	82.012	ENSORLG00000008753	polr1a	99	82.189	Oryzias_latipes
ENSPNYG00000000026	polr1a	100	79.078	ENSORLG00020020726	polr1a	99	79.196	Oryzias_latipes_hni
ENSPNYG00000000026	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSPNYG00000000026	polr1a	100	65.489	ENSOGAG00000004031	POLR1A	100	65.547	Otolemur_garnettii
ENSPNYG00000000026	polr1a	100	65.272	ENSOARG00000020601	POLR1A	100	66.474	Ovis_aries
ENSPNYG00000000026	polr1a	100	65.434	ENSPPAG00000042450	POLR1A	100	65.701	Pan_paniscus
ENSPNYG00000000026	polr1a	100	65.529	ENSPPRG00000006702	POLR1A	100	66.241	Panthera_pardus
ENSPNYG00000000026	polr1a	100	65.072	ENSPTIG00000018783	POLR1A	100	65.780	Panthera_tigris_altaica
ENSPNYG00000000026	polr1a	100	65.605	ENSPTRG00000012147	POLR1A	100	65.759	Pan_troglodytes
ENSPNYG00000000026	polr1a	100	65.509	ENSPANG00000025908	POLR1A	100	65.759	Papio_anubis
ENSPNYG00000000026	polr1a	100	71.571	ENSPKIG00000005468	polr1a	98	75.000	Paramormyrops_kingsleyae
ENSPNYG00000000026	polr1a	69	65.409	ENSPSIG00000009321	-	99	65.953	Pelodiscus_sinensis
ENSPNYG00000000026	polr1a	55	82.232	ENSPMGG00000009718	polr1a	95	82.232	Periophthalmus_magnuspinnatus
ENSPNYG00000000026	polr1a	100	65.205	ENSPEMG00000022224	Polr1a	100	65.112	Peromyscus_maniculatus_bairdii
ENSPNYG00000000026	polr1a	95	64.530	ENSPCIG00000004222	POLR1A	99	64.338	Phascolarctos_cinereus
ENSPNYG00000000026	polr1a	100	81.829	ENSPFOG00000005025	polr1a	100	82.471	Poecilia_formosa
ENSPNYG00000000026	polr1a	100	82.242	ENSPLAG00000021389	polr1a	100	82.616	Poecilia_latipinna
ENSPNYG00000000026	polr1a	100	78.920	ENSPMEG00000006463	polr1a	100	79.695	Poecilia_mexicana
ENSPNYG00000000026	polr1a	100	81.909	ENSPREG00000002389	polr1a	100	82.176	Poecilia_reticulata
ENSPNYG00000000026	polr1a	100	65.491	ENSPPYG00000012217	POLR1A	100	65.721	Pongo_abelii
ENSPNYG00000000026	polr1a	91	64.915	ENSPCAG00000011582	POLR1A	95	55.993	Procavia_capensis
ENSPNYG00000000026	polr1a	100	65.569	ENSPCOG00000026987	POLR1A	100	65.701	Propithecus_coquereli
ENSPNYG00000000026	polr1a	95	65.568	ENSPVAG00000012674	POLR1A	95	65.760	Pteropus_vampyrus
ENSPNYG00000000026	polr1a	100	72.005	ENSPNAG00000019223	polr1a	100	72.180	Pygocentrus_nattereri
ENSPNYG00000000026	polr1a	100	65.159	ENSRNOG00000009545	Polr1a	100	65.719	Rattus_norvegicus
ENSPNYG00000000026	polr1a	100	65.336	ENSRBIG00000028335	POLR1A	100	65.167	Rhinopithecus_bieti
ENSPNYG00000000026	polr1a	100	65.336	ENSRROG00000031473	POLR1A	100	65.167	Rhinopithecus_roxellana
ENSPNYG00000000026	polr1a	95	46.763	YOR341W	RPA190	99	36.333	Saccharomyces_cerevisiae
ENSPNYG00000000026	polr1a	100	64.968	ENSSBOG00000030262	POLR1A	100	65.663	Saimiri_boliviensis_boliviensis
ENSPNYG00000000026	polr1a	100	60.276	ENSSHAG00000014739	POLR1A	100	60.299	Sarcophilus_harrisii
ENSPNYG00000000026	polr1a	100	70.911	ENSSFOG00015019716	polr1a	100	71.220	Scleropages_formosus
ENSPNYG00000000026	polr1a	100	85.142	ENSSMAG00000014342	polr1a	100	85.495	Scophthalmus_maximus
ENSPNYG00000000026	polr1a	100	88.002	ENSSDUG00000014631	polr1a	100	88.121	Seriola_dumerili
ENSPNYG00000000026	polr1a	100	84.099	ENSSLDG00000024095	polr1a	100	84.217	Seriola_lalandi_dorsalis
ENSPNYG00000000026	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSPNYG00000000026	polr1a	95	72.500	ENSSPUG00000004215	POLR1A	99	72.500	Sphenodon_punctatus
ENSPNYG00000000026	polr1a	66	88.876	ENSSPAG00000016341	polr1a	96	88.876	Stegastes_partitus
ENSPNYG00000000026	polr1a	83	66.783	ENSSSCG00000008226	POLR1A	99	66.690	Sus_scrofa
ENSPNYG00000000026	polr1a	99	64.824	ENSTGUG00000010704	POLR1A	100	64.941	Taeniopygia_guttata
ENSPNYG00000000026	polr1a	100	79.221	ENSTRUG00000002210	polr1a	99	79.221	Takifugu_rubripes
ENSPNYG00000000026	polr1a	100	73.077	ENSTNIG00000010116	polr1a	100	73.019	Tetraodon_nigroviridis
ENSPNYG00000000026	polr1a	73	82.743	ENSTBEG00000008646	POLR1A	74	82.743	Tupaia_belangeri
ENSPNYG00000000026	polr1a	100	63.589	ENSTTRG00000008597	POLR1A	100	63.647	Tursiops_truncatus
ENSPNYG00000000026	polr1a	69	66.076	ENSUAMG00000012158	-	94	67.062	Ursus_americanus
ENSPNYG00000000026	polr1a	100	65.304	ENSUMAG00000006700	POLR1A	97	68.936	Ursus_maritimus
ENSPNYG00000000026	polr1a	100	65.951	ENSVVUG00000001245	POLR1A	100	66.067	Vulpes_vulpes
ENSPNYG00000000026	polr1a	100	62.731	ENSXETG00000001952	polr1a	99	64.221	Xenopus_tropicalis
ENSPNYG00000000026	polr1a	100	82.422	ENSXMAG00000004032	polr1a	100	82.422	Xiphophorus_maculatus