EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000001200 (Gene tree)
Gene ID: 102209015
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 12755 bases
Position: chrJH419347.1:1352444-1365198
Accession: 102209015
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000001497	MMR_HSR1	PF01926.23	2.5e-08	1	1
ENSPNYP00000001521	MMR_HSR1	PF01926.23	2.6e-08	1	1
ENSPNYP00000001505	MMR_HSR1	PF01926.23	2.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000001551	-	1371	-	ENSPNYP00000001521	456 (aa)	-	-
ENSPNYT00000001527	-	2621	XM_005744370	ENSPNYP00000001497	482 (aa)	XP_005744427	UPI0003AFAAF1
ENSPNYT00000001535	-	2585	XM_005744371	ENSPNYP00000001505	470 (aa)	XP_005744428	UPI0003AF9C09

Gene Model

Click here to download ENSPNYG00000001200's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000001200's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000001200	srl	90	31.311	ENSPNYG00000009593	-	73	31.311
ENSPNYG00000001200	srl	99	74.624	ENSPNYG00000003423	SRL	58	74.624
ENSPNYG00000001200	srl	82	32.976	ENSPNYG00000003812	ehd3	70	33.333
ENSPNYG00000001200	srl	88	32.754	ENSPNYG00000013916	ehd4	71	32.754
ENSPNYG00000001200	srl	90	32.297	ENSPNYG00000007864	ehd2b	74	32.297
ENSPNYG00000001200	srl	85	31.795	ENSPNYG00000015448	ehd1a	71	31.795

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000001200	srl	97	83.032	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSPNYG00000001200	srl	97	77.376	ENSAPOG00000012432	SRL	98	77.376	Acanthochromis_polyacanthus
ENSPNYG00000001200	srl	100	96.603	ENSAPOG00000018093	srl	100	96.603	Acanthochromis_polyacanthus
ENSPNYG00000001200	srl	98	82.000	ENSAMEG00000010862	SRL	51	82.000	Ailuropoda_melanoleuca
ENSPNYG00000001200	srl	98	98.218	ENSACIG00000015799	srl	100	98.448	Amphilophus_citrinellus
ENSPNYG00000001200	srl	98	75.670	ENSACIG00000015419	SRL	99	75.670	Amphilophus_citrinellus
ENSPNYG00000001200	srl	99	76.380	ENSAOCG00000017049	SRL	100	75.870	Amphiprion_ocellaris
ENSPNYG00000001200	srl	95	97.465	ENSAOCG00000007574	srl	100	97.465	Amphiprion_ocellaris
ENSPNYG00000001200	srl	100	96.894	ENSAPEG00000006911	srl	100	96.894	Amphiprion_percula
ENSPNYG00000001200	srl	99	73.230	ENSAPEG00000006533	SRL	100	73.043	Amphiprion_percula
ENSPNYG00000001200	srl	98	76.356	ENSATEG00000009643	SRL	53	76.573	Anabas_testudineus
ENSPNYG00000001200	srl	100	96.480	ENSATEG00000024315	srl	100	96.480	Anabas_testudineus
ENSPNYG00000001200	srl	97	82.340	ENSACAG00000016380	SRL	89	81.352	Anolis_carolinensis
ENSPNYG00000001200	srl	100	99.793	ENSACLG00000027685	srl	100	99.793	Astatotilapia_calliptera
ENSPNYG00000001200	srl	99	74.569	ENSACLG00000024674	SRL	58	74.569	Astatotilapia_calliptera
ENSPNYG00000001200	srl	99	92.516	ENSAMXG00000018789	srl	92	92.516	Astyanax_mexicanus
ENSPNYG00000001200	srl	92	77.857	ENSAMXG00000038693	SRL	100	73.951	Astyanax_mexicanus
ENSPNYG00000001200	srl	98	83.073	ENSBTAG00000001078	SRL	58	82.237	Bos_taurus
ENSPNYG00000001200	srl	97	83.032	ENSCJAG00000019750	SRL	98	81.075	Callithrix_jacchus
ENSPNYG00000001200	srl	97	82.805	ENSCAFG00000019233	SRL	85	80.786	Canis_familiaris
ENSPNYG00000001200	srl	97	82.805	ENSCAFG00020025024	SRL	56	81.678	Canis_lupus_dingo
ENSPNYG00000001200	srl	98	83.073	ENSCHIG00000017927	SRL	57	82.637	Capra_hircus
ENSPNYG00000001200	srl	98	82.667	ENSTSYG00000007919	SRL	99	83.953	Carlito_syrichta
ENSPNYG00000001200	srl	98	82.444	ENSCPOG00000012643	SRL	98	81.505	Cavia_porcellus
ENSPNYG00000001200	srl	97	77.602	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSPNYG00000001200	srl	97	83.032	ENSCATG00000032227	-	98	81.075	Cercocebus_atys
ENSPNYG00000001200	srl	98	82.667	ENSCLAG00000016242	SRL	98	81.720	Chinchilla_lanigera
ENSPNYG00000001200	srl	84	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSPNYG00000001200	srl	98	85.492	ENSCPBG00000026371	SRL	99	81.590	Chrysemys_picta_bellii
ENSPNYG00000001200	srl	91	60.911	ENSCING00000005231	-	93	60.911	Ciona_intestinalis
ENSPNYG00000001200	srl	97	83.032	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSPNYG00000001200	srl	98	83.333	ENSCGRG00001016630	Srl	98	82.151	Cricetulus_griseus_chok1gshd
ENSPNYG00000001200	srl	98	83.333	ENSCGRG00000005458	Srl	98	82.151	Cricetulus_griseus_crigri
ENSPNYG00000001200	srl	100	95.966	ENSCSEG00000016151	srl	100	95.966	Cynoglossus_semilaevis
ENSPNYG00000001200	srl	98	75.501	ENSCSEG00000011866	SRL	95	73.248	Cynoglossus_semilaevis
ENSPNYG00000001200	srl	98	76.638	ENSCVAG00000022465	SRL	61	76.638	Cyprinodon_variegatus
ENSPNYG00000001200	srl	100	92.739	ENSCVAG00000003513	srl	100	94.203	Cyprinodon_variegatus
ENSPNYG00000001200	srl	83	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSPNYG00000001200	srl	100	91.701	ENSDARG00000104587	srl	100	91.701	Danio_rerio
ENSPNYG00000001200	srl	98	82.667	ENSDNOG00000011643	SRL	54	82.667	Dasypus_novemcinctus
ENSPNYG00000001200	srl	98	83.111	ENSDORG00000014807	Srl	98	82.151	Dipodomys_ordii
ENSPNYG00000001200	srl	81	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSPNYG00000001200	srl	98	82.628	ENSEASG00005000942	SRL	55	81.798	Equus_asinus_asinus
ENSPNYG00000001200	srl	98	82.628	ENSECAG00000024219	SRL	98	81.681	Equus_caballus
ENSPNYG00000001200	srl	100	87.269	ENSELUG00000015616	srl	100	87.269	Esox_lucius
ENSPNYG00000001200	srl	97	82.579	ENSFCAG00000022075	SRL	98	80.645	Felis_catus
ENSPNYG00000001200	srl	96	83.636	ENSFALG00000004328	SRL	63	83.636	Ficedula_albicollis
ENSPNYG00000001200	srl	99	82.637	ENSFDAG00000006199	SRL	98	82.581	Fukomys_damarensis
ENSPNYG00000001200	srl	98	77.130	ENSFHEG00000011854	SRL	99	77.354	Fundulus_heteroclitus
ENSPNYG00000001200	srl	100	94.410	ENSFHEG00000011239	srl	100	94.410	Fundulus_heteroclitus
ENSPNYG00000001200	srl	97	89.845	ENSGMOG00000014954	srl	99	92.053	Gadus_morhua
ENSPNYG00000001200	srl	96	83.864	ENSGALG00000038884	SRL	98	81.857	Gallus_gallus
ENSPNYG00000001200	srl	98	78.348	ENSGAFG00000016984	SRL	100	78.174	Gambusia_affinis
ENSPNYG00000001200	srl	100	94.617	ENSGAFG00000000010	srl	100	94.617	Gambusia_affinis
ENSPNYG00000001200	srl	97	94.066	ENSGACG00000011332	srl	100	96.484	Gasterosteus_aculeatus
ENSPNYG00000001200	srl	97	83.032	ENSGGOG00000011312	-	98	80.860	Gorilla_gorilla
ENSPNYG00000001200	srl	99	74.839	ENSHBUG00000015710	SRL	58	74.839	Haplochromis_burtoni
ENSPNYG00000001200	srl	100	99.793	ENSHBUG00000007581	srl	100	99.793	Haplochromis_burtoni
ENSPNYG00000001200	srl	98	83.111	ENSHGLG00000015271	SRL	98	82.151	Heterocephalus_glaber_female
ENSPNYG00000001200	srl	98	83.111	ENSHGLG00100019378	SRL	98	82.151	Heterocephalus_glaber_male
ENSPNYG00000001200	srl	100	94.915	ENSHCOG00000008687	srl	99	96.205	Hippocampus_comes
ENSPNYG00000001200	srl	97	75.551	ENSHCOG00000001012	SRL	50	75.551	Hippocampus_comes
ENSPNYG00000001200	srl	100	90.890	ENSIPUG00000012513	srl	100	90.890	Ictalurus_punctatus
ENSPNYG00000001200	srl	96	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSPNYG00000001200	srl	98	82.889	ENSSTOG00000021151	-	98	81.720	Ictidomys_tridecemlineatus
ENSPNYG00000001200	srl	99	82.581	ENSJJAG00000016400	Srl	98	82.581	Jaculus_jaculus
ENSPNYG00000001200	srl	97	77.098	ENSKMAG00000019537	SRL	100	77.098	Kryptolebias_marmoratus
ENSPNYG00000001200	srl	98	94.503	ENSKMAG00000014115	srl	95	94.503	Kryptolebias_marmoratus
ENSPNYG00000001200	srl	100	95.754	ENSLBEG00000026643	srl	100	95.754	Labrus_bergylta
ENSPNYG00000001200	srl	97	76.018	ENSLBEG00000013811	SRL	99	74.510	Labrus_bergylta
ENSPNYG00000001200	srl	100	82.609	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSPNYG00000001200	srl	99	88.352	ENSLOCG00000002644	srl	100	86.994	Lepisosteus_oculatus
ENSPNYG00000001200	srl	98	82.000	ENSLAFG00000006329	SRL	52	81.898	Loxodonta_africana
ENSPNYG00000001200	srl	94	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSPNYG00000001200	srl	97	83.032	ENSMNEG00000019236	-	97	81.004	Macaca_nemestrina
ENSPNYG00000001200	srl	97	76.018	ENSMLEG00000032156	SRL	98	74.409	Mandrillus_leucophaeus
ENSPNYG00000001200	srl	97	76.211	ENSMAMG00000013756	SRL	53	76.211	Mastacembelus_armatus
ENSPNYG00000001200	srl	97	96.847	ENSMAMG00000023322	srl	99	94.004	Mastacembelus_armatus
ENSPNYG00000001200	srl	100	99.793	ENSMZEG00005004548	srl	100	99.793	Maylandia_zebra
ENSPNYG00000001200	srl	99	74.624	ENSMZEG00005004010	SRL	59	74.359	Maylandia_zebra
ENSPNYG00000001200	srl	96	83.864	ENSMGAG00000009342	SRL	97	83.290	Meleagris_gallopavo
ENSPNYG00000001200	srl	98	82.444	ENSMICG00000032307	SRL	98	81.290	Microcebus_murinus
ENSPNYG00000001200	srl	98	82.667	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSPNYG00000001200	srl	98	95.991	ENSMMOG00000013970	srl	100	96.222	Mola_mola
ENSPNYG00000001200	srl	97	74.945	ENSMMOG00000021572	SRL	99	75.165	Mola_mola
ENSPNYG00000001200	srl	98	83.482	ENSMODG00000016380	-	51	83.370	Monodelphis_domestica
ENSPNYG00000001200	srl	92	78.043	ENSMALG00000000670	SRL	98	78.043	Monopterus_albus
ENSPNYG00000001200	srl	99	94.912	ENSMALG00000005039	srl	100	94.912	Monopterus_albus
ENSPNYG00000001200	srl	97	84.842	MGP_CAROLIEiJ_G0020400	Srl	98	82.759	Mus_caroli
ENSPNYG00000001200	srl	97	84.842	ENSMUSG00000022519	Srl	98	82.759	Mus_musculus
ENSPNYG00000001200	srl	97	84.842	MGP_SPRETEiJ_G0021294	Srl	98	82.759	Mus_spretus
ENSPNYG00000001200	srl	98	82.000	ENSMPUG00000015025	SRL	55	82.000	Mustela_putorius_furo
ENSPNYG00000001200	srl	98	82.889	ENSMLUG00000030733	SRL	58	82.314	Myotis_lucifugus
ENSPNYG00000001200	srl	98	83.778	ENSNGAG00000019741	Srl	98	82.328	Nannospalax_galili
ENSPNYG00000001200	srl	100	99.362	ENSNBRG00000023775	srl	100	99.362	Neolamprologus_brichardi
ENSPNYG00000001200	srl	99	74.194	ENSNBRG00000002422	SRL	56	76.620	Neolamprologus_brichardi
ENSPNYG00000001200	srl	97	77.376	ENSNLEG00000029051	SRL	98	75.269	Nomascus_leucogenys
ENSPNYG00000001200	srl	98	76.667	ENSOPRG00000000477	-	53	76.667	Ochotona_princeps
ENSPNYG00000001200	srl	97	83.937	ENSODEG00000013256	SRL	98	81.681	Octodon_degus
ENSPNYG00000001200	srl	100	99.378	ENSONIG00000005192	srl	100	99.378	Oreochromis_niloticus
ENSPNYG00000001200	srl	99	80.217	ENSOCUG00000025140	SRL	50	81.223	Oryctolagus_cuniculus
ENSPNYG00000001200	srl	97	75.000	ENSORLG00000015064	SRL	97	75.169	Oryzias_latipes
ENSPNYG00000001200	srl	100	95.436	ENSORLG00000008291	srl	97	96.480	Oryzias_latipes
ENSPNYG00000001200	srl	97	75.225	ENSORLG00020018173	SRL	97	75.395	Oryzias_latipes_hni
ENSPNYG00000001200	srl	100	96.894	ENSORLG00020019784	srl	85	96.894	Oryzias_latipes_hni
ENSPNYG00000001200	srl	100	95.436	ENSORLG00015009342	srl	97	96.480	Oryzias_latipes_hsok
ENSPNYG00000001200	srl	97	75.395	ENSORLG00015019063	SRL	97	75.395	Oryzias_latipes_hsok
ENSPNYG00000001200	srl	100	95.228	ENSOMEG00000010006	srl	100	96.273	Oryzias_melastigma
ENSPNYG00000001200	srl	97	73.904	ENSOMEG00000005682	SRL	53	74.179	Oryzias_melastigma
ENSPNYG00000001200	srl	99	80.652	ENSOGAG00000029266	SRL	56	81.798	Otolemur_garnettii
ENSPNYG00000001200	srl	98	83.073	ENSOARG00000003074	SRL	57	82.213	Ovis_aries
ENSPNYG00000001200	srl	97	83.032	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSPNYG00000001200	srl	97	82.579	ENSPPRG00000010274	SRL	98	84.360	Panthera_pardus
ENSPNYG00000001200	srl	97	82.579	ENSPTIG00000015162	SRL	98	84.360	Panthera_tigris_altaica
ENSPNYG00000001200	srl	97	83.032	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSPNYG00000001200	srl	97	83.032	ENSPANG00000013804	SRL	98	81.004	Papio_anubis
ENSPNYG00000001200	srl	100	90.515	ENSPKIG00000006405	srl	100	90.515	Paramormyrops_kingsleyae
ENSPNYG00000001200	srl	100	78.556	ENSPKIG00000024974	SRL	94	78.556	Paramormyrops_kingsleyae
ENSPNYG00000001200	srl	99	93.846	ENSPMGG00000021081	srl	98	93.846	Periophthalmus_magnuspinnatus
ENSPNYG00000001200	srl	97	76.072	ENSPMGG00000023505	-	100	76.072	Periophthalmus_magnuspinnatus
ENSPNYG00000001200	srl	98	82.889	ENSPEMG00000015842	Srl	98	81.720	Peromyscus_maniculatus_bairdii
ENSPNYG00000001200	srl	92	68.119	ENSPMAG00000004786	srl	99	68.650	Petromyzon_marinus
ENSPNYG00000001200	srl	98	83.036	ENSPCIG00000012128	SRL	99	82.927	Phascolarctos_cinereus
ENSPNYG00000001200	srl	100	94.824	ENSPFOG00000011408	srl	98	93.082	Poecilia_formosa
ENSPNYG00000001200	srl	98	77.009	ENSPLAG00000002932	SRL	100	76.837	Poecilia_latipinna
ENSPNYG00000001200	srl	98	95.536	ENSPLAG00000008017	srl	100	93.709	Poecilia_latipinna
ENSPNYG00000001200	srl	100	94.692	ENSPMEG00000006745	srl	100	93.709	Poecilia_mexicana
ENSPNYG00000001200	srl	98	75.488	ENSPMEG00000005890	SRL	61	74.573	Poecilia_mexicana
ENSPNYG00000001200	srl	98	77.728	ENSPREG00000000315	SRL	100	77.951	Poecilia_reticulata
ENSPNYG00000001200	srl	100	94.824	ENSPREG00000007751	srl	99	95.759	Poecilia_reticulata
ENSPNYG00000001200	srl	92	84.726	ENSPPYG00000007053	SRL	98	84.726	Pongo_abelii
ENSPNYG00000001200	srl	99	81.441	ENSPCAG00000003378	-	51	82.637	Procavia_capensis
ENSPNYG00000001200	srl	98	82.444	ENSPCOG00000023135	SRL	99	83.721	Propithecus_coquereli
ENSPNYG00000001200	srl	98	82.667	ENSPVAG00000006586	SRL	56	82.561	Pteropus_vampyrus
ENSPNYG00000001200	srl	97	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSPNYG00000001200	srl	100	91.701	ENSPNAG00000023106	srl	100	91.701	Pygocentrus_nattereri
ENSPNYG00000001200	srl	98	83.333	ENSRNOG00000005269	Srl	50	83.333	Rattus_norvegicus
ENSPNYG00000001200	srl	97	83.032	ENSRBIG00000042358	SRL	51	81.579	Rhinopithecus_bieti
ENSPNYG00000001200	srl	97	83.032	ENSSBOG00000029273	SRL	98	81.075	Saimiri_boliviensis_boliviensis
ENSPNYG00000001200	srl	99	82.927	ENSSHAG00000011715	-	51	83.111	Sarcophilus_harrisii
ENSPNYG00000001200	srl	98	93.708	ENSSFOG00015009773	srl	100	91.529	Scleropages_formosus
ENSPNYG00000001200	srl	98	77.803	ENSSFOG00015021327	SRL	50	77.679	Scleropages_formosus
ENSPNYG00000001200	srl	100	95.754	ENSSMAG00000016274	srl	100	95.754	Scophthalmus_maximus
ENSPNYG00000001200	srl	97	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSPNYG00000001200	srl	98	96.637	ENSSDUG00000010808	srl	98	96.637	Seriola_dumerili
ENSPNYG00000001200	srl	97	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSPNYG00000001200	srl	97	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSPNYG00000001200	srl	100	94.606	ENSSLDG00000022024	srl	100	96.066	Seriola_lalandi_dorsalis
ENSPNYG00000001200	srl	97	83.032	ENSSPUG00000016859	SRL	99	81.637	Sphenodon_punctatus
ENSPNYG00000001200	srl	97	78.685	ENSSPAG00000014254	SRL	98	78.685	Stegastes_partitus
ENSPNYG00000001200	srl	100	97.107	ENSSPAG00000019105	srl	100	97.107	Stegastes_partitus
ENSPNYG00000001200	srl	98	82.405	ENSSSCG00000007949	SRL	98	83.220	Sus_scrofa
ENSPNYG00000001200	srl	96	83.864	ENSTGUG00000003951	-	99	82.705	Taeniopygia_guttata
ENSPNYG00000001200	srl	79	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSPNYG00000001200	srl	92	78.282	ENSTRUG00000013310	SRL	55	78.282	Takifugu_rubripes
ENSPNYG00000001200	srl	100	95.754	ENSTRUG00000006005	srl	100	95.754	Takifugu_rubripes
ENSPNYG00000001200	srl	98	96.214	ENSTNIG00000009739	srl	100	95.117	Tetraodon_nigroviridis
ENSPNYG00000001200	srl	99	80.963	ENSUAMG00000005701	SRL	57	80.963	Ursus_americanus
ENSPNYG00000001200	srl	99	80.963	ENSUMAG00000002574	SRL	56	81.498	Ursus_maritimus
ENSPNYG00000001200	srl	99	80.392	ENSVVUG00000016331	-	50	80.963	Vulpes_vulpes
ENSPNYG00000001200	srl	98	82.143	ENSXETG00000017313	srl	99	82.143	Xenopus_tropicalis
ENSPNYG00000001200	srl	92	95.962	ENSXCOG00000010424	srl	97	95.962	Xiphophorus_couchianus
ENSPNYG00000001200	srl	98	78.125	ENSXCOG00000014584	SRL	99	78.125	Xiphophorus_couchianus
ENSPNYG00000001200	srl	100	94.617	ENSXMAG00000004625	srl	95	94.617	Xiphophorus_maculatus
ENSPNYG00000001200	srl	99	75.431	ENSXMAG00000027598	SRL	64	75.214	Xiphophorus_maculatus