EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000001795 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 15768 bases
Position: chrJH419209.1:458949-474716
Accession: 102199115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000002458	ResIII	PF04851.15	9.6e-12	1	1
ENSPNYP00000002417	ResIII	PF04851.15	4.7e-10	1	1
ENSPNYP00000002458	DEAD	PF00270.29	1.6e-27	1	1
ENSPNYP00000002417	DEAD	PF00270.29	5.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000002480	-	2469	XM_005720995	ENSPNYP00000002417	823 (aa)	XP_005721052	-
ENSPNYT00000002522	-	3144	-	ENSPNYP00000002458	1047 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000001795's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000001795's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000001795	hfm1	78	31.981	ENSPNYG00000018913	ascc3	67	32.258
ENSPNYG00000001795	hfm1	87	30.042	ENSPNYG00000017476	snrnp200	71	30.053

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000001795	hfm1	97	65.197	ENSG00000162669	HFM1	65	63.519	Homo_sapiens
ENSPNYG00000001795	hfm1	100	82.380	ENSAPOG00000005304	hfm1	99	82.380	Acanthochromis_polyacanthus
ENSPNYG00000001795	hfm1	96	65.108	ENSAMEG00000000432	HFM1	64	63.451	Ailuropoda_melanoleuca
ENSPNYG00000001795	hfm1	98	83.896	ENSACIG00000021553	hfm1	95	83.896	Amphilophus_citrinellus
ENSPNYG00000001795	hfm1	100	83.333	ENSAOCG00000022839	hfm1	99	83.333	Amphiprion_ocellaris
ENSPNYG00000001795	hfm1	100	83.841	ENSAPEG00000014316	hfm1	99	83.841	Amphiprion_percula
ENSPNYG00000001795	hfm1	96	83.112	ENSATEG00000019181	hfm1	93	72.521	Anabas_testudineus
ENSPNYG00000001795	hfm1	96	65.191	ENSAPLG00000013639	HFM1	65	64.440	Anas_platyrhynchos
ENSPNYG00000001795	hfm1	98	63.604	ENSANAG00000029513	HFM1	71	59.608	Aotus_nancymaae
ENSPNYG00000001795	hfm1	100	99.514	ENSACLG00000009033	hfm1	100	99.514	Astatotilapia_calliptera
ENSPNYG00000001795	hfm1	96	73.077	ENSAMXG00000006108	hfm1	66	70.296	Astyanax_mexicanus
ENSPNYG00000001795	hfm1	96	65.348	ENSBTAG00000020856	HFM1	70	60.550	Bos_taurus
ENSPNYG00000001795	hfm1	98	64.269	ENSCJAG00000001843	HFM1	65	63.305	Callithrix_jacchus
ENSPNYG00000001795	hfm1	96	65.186	ENSCAFG00000020187	HFM1	64	63.130	Canis_familiaris
ENSPNYG00000001795	hfm1	97	65.476	ENSTSYG00000014250	HFM1	65	63.987	Carlito_syrichta
ENSPNYG00000001795	hfm1	97	64.720	ENSCPOG00000007421	HFM1	66	63.451	Cavia_porcellus
ENSPNYG00000001795	hfm1	98	63.915	ENSCCAG00000033206	HFM1	65	62.983	Cebus_capucinus
ENSPNYG00000001795	hfm1	97	65.072	ENSCATG00000030987	HFM1	65	63.305	Cercocebus_atys
ENSPNYG00000001795	hfm1	97	64.642	ENSCLAG00000005173	HFM1	63	62.446	Chinchilla_lanigera
ENSPNYG00000001795	hfm1	80	50.838	ENSCSAVG00000005094	-	100	52.089	Ciona_savignyi
ENSPNYG00000001795	hfm1	92	61.673	ENSCGRG00001016995	Hfm1	65	59.516	Cricetulus_griseus_chok1gshd
ENSPNYG00000001795	hfm1	98	62.884	ENSCGRG00000017181	Hfm1	65	61.547	Cricetulus_griseus_crigri
ENSPNYG00000001795	hfm1	97	76.047	ENSCSEG00000017659	hfm1	96	72.102	Cynoglossus_semilaevis
ENSPNYG00000001795	hfm1	82	78.481	ENSCVAG00000005075	hfm1	86	80.169	Cyprinodon_variegatus
ENSPNYG00000001795	hfm1	98	71.084	ENSDARG00000104288	hfm1	76	71.084	Danio_rerio
ENSPNYG00000001795	hfm1	98	63.412	ENSDNOG00000004776	HFM1	62	62.863	Dasypus_novemcinctus
ENSPNYG00000001795	hfm1	97	62.266	ENSDORG00000014661	Hfm1	65	61.158	Dipodomys_ordii
ENSPNYG00000001795	hfm1	53	60.841	ENSEBUG00000006133	-	92	60.841	Eptatretus_burgeri
ENSPNYG00000001795	hfm1	93	64.713	ENSEASG00005015424	HFM1	87	63.222	Equus_asinus_asinus
ENSPNYG00000001795	hfm1	97	64.720	ENSECAG00000024039	HFM1	63	63.344	Equus_caballus
ENSPNYG00000001795	hfm1	99	75.467	ENSELUG00000018944	hfm1	98	75.467	Esox_lucius
ENSPNYG00000001795	hfm1	96	64.988	ENSFCAG00000029116	HFM1	69	59.549	Felis_catus
ENSPNYG00000001795	hfm1	96	65.988	ENSFALG00000001781	HFM1	65	64.293	Ficedula_albicollis
ENSPNYG00000001795	hfm1	97	64.839	ENSFDAG00000020816	HFM1	62	63.558	Fukomys_damarensis
ENSPNYG00000001795	hfm1	95	71.814	ENSGMOG00000017436	hfm1	97	68.556	Gadus_morhua
ENSPNYG00000001795	hfm1	99	78.009	ENSGAFG00000018093	hfm1	100	78.009	Gambusia_affinis
ENSPNYG00000001795	hfm1	95	78.335	ENSGACG00000015686	hfm1	98	75.026	Gasterosteus_aculeatus
ENSPNYG00000001795	hfm1	97	65.197	ENSGGOG00000038524	HFM1	65	63.412	Gorilla_gorilla
ENSPNYG00000001795	hfm1	100	98.095	ENSHBUG00000007309	hfm1	100	98.095	Haplochromis_burtoni
ENSPNYG00000001795	hfm1	99	80.000	ENSHCOG00000019632	hfm1	100	80.000	Hippocampus_comes
ENSPNYG00000001795	hfm1	99	70.276	ENSIPUG00000017020	hfm1	98	70.276	Ictalurus_punctatus
ENSPNYG00000001795	hfm1	97	63.647	ENSJJAG00000017198	Hfm1	66	61.803	Jaculus_jaculus
ENSPNYG00000001795	hfm1	94	81.518	ENSKMAG00000002282	hfm1	91	78.354	Kryptolebias_marmoratus
ENSPNYG00000001795	hfm1	100	84.746	ENSLBEG00000006759	hfm1	99	84.746	Labrus_bergylta
ENSPNYG00000001795	hfm1	95	67.750	ENSLACG00000010698	HFM1	89	65.287	Latimeria_chalumnae
ENSPNYG00000001795	hfm1	97	71.002	ENSLOCG00000004931	hfm1	86	68.119	Lepisosteus_oculatus
ENSPNYG00000001795	hfm1	79	66.373	ENSLAFG00000015903	-	90	68.806	Loxodonta_africana
ENSPNYG00000001795	hfm1	97	62.321	ENSMFAG00000003649	HFM1	65	60.874	Macaca_fascicularis
ENSPNYG00000001795	hfm1	97	64.482	ENSMMUG00000006819	HFM1	65	62.876	Macaca_mulatta
ENSPNYG00000001795	hfm1	100	85.109	ENSMAMG00000004623	hfm1	99	85.109	Mastacembelus_armatus
ENSPNYG00000001795	hfm1	100	99.635	ENSMZEG00005004679	hfm1	100	99.635	Maylandia_zebra
ENSPNYG00000001795	hfm1	88	64.398	ENSMGAG00000008437	HFM1	95	67.060	Meleagris_gallopavo
ENSPNYG00000001795	hfm1	97	63.723	ENSMAUG00000018858	Hfm1	65	61.976	Mesocricetus_auratus
ENSPNYG00000001795	hfm1	97	64.286	ENSMICG00000037935	HFM1	65	63.023	Microcebus_murinus
ENSPNYG00000001795	hfm1	97	64.081	ENSMOCG00000014812	Hfm1	65	62.084	Microtus_ochrogaster
ENSPNYG00000001795	hfm1	100	82.305	ENSMMOG00000006148	hfm1	99	82.305	Mola_mola
ENSPNYG00000001795	hfm1	100	83.353	ENSMALG00000002401	hfm1	99	83.353	Monopterus_albus
ENSPNYG00000001795	hfm1	88	73.504	MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	Mus_caroli
ENSPNYG00000001795	hfm1	97	63.365	ENSMUSG00000043410	Hfm1	65	61.415	Mus_musculus
ENSPNYG00000001795	hfm1	97	63.604	MGP_PahariEiJ_G0017268	Hfm1	70	58.481	Mus_pahari
ENSPNYG00000001795	hfm1	97	63.766	MGP_SPRETEiJ_G0028495	Hfm1	70	58.679	Mus_spretus
ENSPNYG00000001795	hfm1	97	64.227	ENSMPUG00000004594	HFM1	63	63.209	Mustela_putorius_furo
ENSPNYG00000001795	hfm1	97	64.345	ENSMLUG00000010200	HFM1	64	63.197	Myotis_lucifugus
ENSPNYG00000001795	hfm1	100	96.014	ENSNBRG00000002910	hfm1	100	96.014	Neolamprologus_brichardi
ENSPNYG00000001795	hfm1	97	63.723	ENSNLEG00000010285	HFM1	62	62.598	Nomascus_leucogenys
ENSPNYG00000001795	hfm1	87	65.772	ENSMEUG00000015788	HFM1	59	58.883	Notamacropus_eugenii
ENSPNYG00000001795	hfm1	97	59.952	ENSOPRG00000013916	HFM1	58	61.017	Ochotona_princeps
ENSPNYG00000001795	hfm1	98	91.924	ENSONIG00000010590	hfm1	97	84.119	Oreochromis_niloticus
ENSPNYG00000001795	hfm1	94	82.188	ENSORLG00000026844	hfm1	99	82.188	Oryzias_latipes
ENSPNYG00000001795	hfm1	98	69.664	ENSORLG00020002951	hfm1	74	68.710	Oryzias_latipes_hni
ENSPNYG00000001795	hfm1	98	78.622	ENSOMEG00000016474	hfm1	65	76.395	Oryzias_melastigma
ENSPNYG00000001795	hfm1	97	64.994	ENSOGAG00000032369	HFM1	76	63.490	Otolemur_garnettii
ENSPNYG00000001795	hfm1	97	65.036	ENSOARG00000015812	HFM1	70	60.374	Ovis_aries
ENSPNYG00000001795	hfm1	97	65.435	ENSPPAG00000024582	HFM1	70	63.734	Pan_paniscus
ENSPNYG00000001795	hfm1	96	64.988	ENSPPRG00000003270	HFM1	64	63.276	Panthera_pardus
ENSPNYG00000001795	hfm1	96	64.988	ENSPTIG00000018881	HFM1	64	63.383	Panthera_tigris_altaica
ENSPNYG00000001795	hfm1	97	65.316	ENSPTRG00000000948	HFM1	65	63.627	Pan_troglodytes
ENSPNYG00000001795	hfm1	97	64.713	ENSPANG00000009838	HFM1	65	62.983	Papio_anubis
ENSPNYG00000001795	hfm1	99	71.207	ENSPKIG00000003810	hfm1	99	71.207	Paramormyrops_kingsleyae
ENSPNYG00000001795	hfm1	95	79.697	ENSPMGG00000011059	hfm1	99	79.697	Periophthalmus_magnuspinnatus
ENSPNYG00000001795	hfm1	97	64.081	ENSPEMG00000022852	Hfm1	65	61.976	Peromyscus_maniculatus_bairdii
ENSPNYG00000001795	hfm1	96	65.191	ENSPCIG00000014233	HFM1	63	63.287	Phascolarctos_cinereus
ENSPNYG00000001795	hfm1	95	79.733	ENSPFOG00000017194	hfm1	99	72.529	Poecilia_formosa
ENSPNYG00000001795	hfm1	96	79.444	ENSPLAG00000000571	hfm1	94	73.454	Poecilia_latipinna
ENSPNYG00000001795	hfm1	96	79.565	ENSPMEG00000019475	hfm1	95	73.855	Poecilia_mexicana
ENSPNYG00000001795	hfm1	99	77.842	ENSPREG00000007803	hfm1	100	77.842	Poecilia_reticulata
ENSPNYG00000001795	hfm1	97	65.274	ENSPPYG00000001163	HFM1	70	59.803	Pongo_abelii
ENSPNYG00000001795	hfm1	98	59.953	ENSPVAG00000009713	HFM1	66	57.372	Pteropus_vampyrus
ENSPNYG00000001795	hfm1	98	74.481	ENSPNAG00000010865	hfm1	84	74.481	Pygocentrus_nattereri
ENSPNYG00000001795	hfm1	97	63.647	ENSRNOG00000023299	Hfm1	70	57.941	Rattus_norvegicus
ENSPNYG00000001795	hfm1	97	65.072	ENSRROG00000045569	HFM1	70	59.704	Rhinopithecus_roxellana
ENSPNYG00000001795	hfm1	97	64.755	ENSSBOG00000027456	HFM1	66	63.197	Saimiri_boliviensis_boliviensis
ENSPNYG00000001795	hfm1	71	62.975	ENSSHAG00000014616	-	72	62.975	Sarcophilus_harrisii
ENSPNYG00000001795	hfm1	97	71.819	ENSSFOG00015020129	hfm1	63	68.139	Scleropages_formosus
ENSPNYG00000001795	hfm1	96	82.289	ENSSMAG00000006907	hfm1	88	81.403	Scophthalmus_maximus
ENSPNYG00000001795	hfm1	100	81.607	ENSSDUG00000011424	hfm1	99	81.607	Seriola_dumerili
ENSPNYG00000001795	hfm1	100	81.013	ENSSLDG00000016386	hfm1	99	81.013	Seriola_lalandi_dorsalis
ENSPNYG00000001795	hfm1	100	82.189	ENSSPAG00000001023	hfm1	99	82.189	Stegastes_partitus
ENSPNYG00000001795	hfm1	97	64.839	ENSSSCG00000006912	HFM1	68	63.197	Sus_scrofa
ENSPNYG00000001795	hfm1	95	65.939	ENSTGUG00000006172	HFM1	97	64.026	Taeniopygia_guttata
ENSPNYG00000001795	hfm1	56	79.657	ENSTNIG00000006962	hfm1	97	80.042	Tetraodon_nigroviridis
ENSPNYG00000001795	hfm1	97	64.362	ENSTTRG00000013933	HFM1	71	59.881	Tursiops_truncatus
ENSPNYG00000001795	hfm1	96	62.590	ENSVPAG00000011331	HFM1	65	61.093	Vicugna_pacos
ENSPNYG00000001795	hfm1	94	64.480	ENSVVUG00000020760	HFM1	88	63.606	Vulpes_vulpes
ENSPNYG00000001795	hfm1	99	77.523	ENSXMAG00000004178	hfm1	100	77.408	Xiphophorus_maculatus