EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000003694 (Gene tree)
Gene ID: 102194081
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 12120 bases
Position: chrJH419209.1:1379974-1392093
Accession: 102194081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000004833	UPF1_Zn_bind	PF09416.10	1.8e-75	1	1
ENSPNYP00000004833	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000004952	-	5879	XM_005721069	ENSPNYP00000004833	1109 (aa)	XP_005721126	UPI000329A9F4

Gene Model

Click here to download ENSPNYG00000003694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000003694's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000003694	upf1	100	92.453	ENSPNYG00000016731	-	100	92.183

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000003694	upf1	100	90.901	ENSG00000005007	UPF1	100	89.719	Homo_sapiens
ENSPNYG00000003694	upf1	100	92.543	ENSAPOG00000010916	-	100	92.273	Acanthochromis_polyacanthus
ENSPNYG00000003694	upf1	100	98.562	ENSAPOG00000023773	upf1	100	98.562	Acanthochromis_polyacanthus
ENSPNYG00000003694	upf1	100	90.422	ENSAMEG00000011474	UPF1	100	89.248	Ailuropoda_melanoleuca
ENSPNYG00000003694	upf1	100	98.377	ENSACIG00000019949	upf1	100	98.377	Amphilophus_citrinellus
ENSPNYG00000003694	upf1	94	92.293	ENSACIG00000010985	-	100	91.563	Amphilophus_citrinellus
ENSPNYG00000003694	upf1	100	98.562	ENSAOCG00000018519	upf1	100	98.562	Amphiprion_ocellaris
ENSPNYG00000003694	upf1	100	92.543	ENSAOCG00000006352	-	100	92.273	Amphiprion_ocellaris
ENSPNYG00000003694	upf1	100	92.543	ENSAPEG00000006292	-	100	92.273	Amphiprion_percula
ENSPNYG00000003694	upf1	100	98.562	ENSAPEG00000016344	upf1	100	98.562	Amphiprion_percula
ENSPNYG00000003694	upf1	100	96.953	ENSATEG00000017867	upf1	100	96.953	Anabas_testudineus
ENSPNYG00000003694	upf1	100	92.543	ENSATEG00000016606	-	100	92.273	Anabas_testudineus
ENSPNYG00000003694	upf1	95	92.502	ENSAPLG00000009175	UPF1	100	91.146	Anas_platyrhynchos
ENSPNYG00000003694	upf1	95	90.789	ENSANAG00000024107	UPF1	95	89.439	Aotus_nancymaae
ENSPNYG00000003694	upf1	100	92.453	ENSACLG00000022630	-	100	92.183	Astatotilapia_calliptera
ENSPNYG00000003694	upf1	100	98.828	ENSACLG00000007181	upf1	100	98.828	Astatotilapia_calliptera
ENSPNYG00000003694	upf1	100	94.149	ENSAMXG00000042187	upf1	100	93.470	Astyanax_mexicanus
ENSPNYG00000003694	upf1	100	90.439	ENSBTAG00000020922	UPF1	100	89.267	Bos_taurus
ENSPNYG00000003694	upf1	87	51.689	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSPNYG00000003694	upf1	100	90.026	ENSCJAG00000019627	UPF1	100	88.860	Callithrix_jacchus
ENSPNYG00000003694	upf1	100	90.201	ENSCAFG00000014578	UPF1	100	89.034	Canis_familiaris
ENSPNYG00000003694	upf1	100	91.078	ENSCAFG00020012347	UPF1	100	89.895	Canis_lupus_dingo
ENSPNYG00000003694	upf1	100	91.320	ENSCHIG00000011018	UPF1	100	90.132	Capra_hircus
ENSPNYG00000003694	upf1	95	92.199	ENSTSYG00000008877	UPF1	98	90.841	Carlito_syrichta
ENSPNYG00000003694	upf1	96	91.450	ENSCAPG00000005758	UPF1	95	90.748	Cavia_aperea
ENSPNYG00000003694	upf1	100	91.192	ENSCPOG00000025463	UPF1	100	90.000	Cavia_porcellus
ENSPNYG00000003694	upf1	100	90.901	ENSCCAG00000032175	UPF1	100	89.719	Cebus_capucinus
ENSPNYG00000003694	upf1	94	92.170	ENSCATG00000040306	UPF1	98	90.410	Cercocebus_atys
ENSPNYG00000003694	upf1	95	92.105	ENSCLAG00000004037	UPF1	99	90.841	Chinchilla_lanigera
ENSPNYG00000003694	upf1	100	90.901	ENSCSAG00000005276	UPF1	100	89.719	Chlorocebus_sabaeus
ENSPNYG00000003694	upf1	100	91.474	ENSCPBG00000012513	UPF1	100	90.194	Chrysemys_picta_bellii
ENSPNYG00000003694	upf1	76	79.812	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSPNYG00000003694	upf1	99	72.000	ENSCSAVG00000006533	-	99	72.202	Ciona_savignyi
ENSPNYG00000003694	upf1	95	92.105	ENSCANG00000029819	UPF1	97	90.748	Colobus_angolensis_palliatus
ENSPNYG00000003694	upf1	100	91.038	ENSCGRG00001021067	Upf1	100	89.938	Cricetulus_griseus_chok1gshd
ENSPNYG00000003694	upf1	95	91.823	ENSCGRG00000013480	Upf1	98	90.561	Cricetulus_griseus_crigri
ENSPNYG00000003694	upf1	100	89.568	ENSCSEG00000017239	upf1	100	89.658	Cynoglossus_semilaevis
ENSPNYG00000003694	upf1	100	93.165	ENSCSEG00000016159	-	100	92.032	Cynoglossus_semilaevis
ENSPNYG00000003694	upf1	100	92.183	ENSCVAG00000010561	upf1	100	91.914	Cyprinodon_variegatus
ENSPNYG00000003694	upf1	100	93.969	ENSDARG00000016302	upf1	100	93.560	Danio_rerio
ENSPNYG00000003694	upf1	95	89.671	ENSDORG00000009984	Upf1	95	88.422	Dipodomys_ordii
ENSPNYG00000003694	upf1	84	72.650	FBgn0030354	Upf1	81	71.132	Drosophila_melanogaster
ENSPNYG00000003694	upf1	54	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSPNYG00000003694	upf1	100	91.320	ENSEASG00005006549	UPF1	100	90.132	Equus_asinus_asinus
ENSPNYG00000003694	upf1	100	91.320	ENSECAG00000010639	UPF1	100	90.132	Equus_caballus
ENSPNYG00000003694	upf1	100	94.505	ENSELUG00000020917	upf1	100	93.874	Esox_lucius
ENSPNYG00000003694	upf1	100	92.838	ENSELUG00000012916	-	100	92.000	Esox_lucius
ENSPNYG00000003694	upf1	100	90.201	ENSFCAG00000009757	UPF1	100	89.034	Felis_catus
ENSPNYG00000003694	upf1	95	93.019	ENSFALG00000009312	UPF1	96	91.651	Ficedula_albicollis
ENSPNYG00000003694	upf1	95	92.011	ENSFDAG00000014816	UPF1	99	90.748	Fukomys_damarensis
ENSPNYG00000003694	upf1	100	93.011	ENSFHEG00000006428	upf1	100	91.749	Fundulus_heteroclitus
ENSPNYG00000003694	upf1	87	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSPNYG00000003694	upf1	100	90.844	ENSGMOG00000007541	upf1	100	90.780	Gadus_morhua
ENSPNYG00000003694	upf1	100	91.239	ENSGALG00000003220	UPF1	100	89.877	Gallus_gallus
ENSPNYG00000003694	upf1	62	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSPNYG00000003694	upf1	100	92.273	ENSGAFG00000004831	upf1	100	91.935	Gambusia_affinis
ENSPNYG00000003694	upf1	100	91.882	ENSGAGG00000022217	UPF1	100	90.861	Gopherus_agassizii
ENSPNYG00000003694	upf1	95	93.067	ENSGGOG00000002608	UPF1	99	91.690	Gorilla_gorilla
ENSPNYG00000003694	upf1	88	100.000	ENSHBUG00000014694	upf1	100	100.000	Haplochromis_burtoni
ENSPNYG00000003694	upf1	85	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSPNYG00000003694	upf1	100	89.851	ENSHGLG00000010900	UPF1	100	88.947	Heterocephalus_glaber_female
ENSPNYG00000003694	upf1	95	90.226	ENSHGLG00100005904	UPF1	96	89.159	Heterocephalus_glaber_male
ENSPNYG00000003694	upf1	100	91.914	ENSHCOG00000008918	upf1	100	91.950	Hippocampus_comes
ENSPNYG00000003694	upf1	100	94.239	ENSIPUG00000005108	UPF1	100	93.739	Ictalurus_punctatus
ENSPNYG00000003694	upf1	100	90.813	ENSSTOG00000009196	UPF1	100	89.719	Ictidomys_tridecemlineatus
ENSPNYG00000003694	upf1	100	90.317	ENSJJAG00000023151	Upf1	100	89.229	Jaculus_jaculus
ENSPNYG00000003694	upf1	100	92.183	ENSKMAG00000004962	upf1	100	91.914	Kryptolebias_marmoratus
ENSPNYG00000003694	upf1	100	97.215	ENSLBEG00000014862	upf1	100	97.215	Labrus_bergylta
ENSPNYG00000003694	upf1	100	92.549	ENSLBEG00000027848	-	100	91.921	Labrus_bergylta
ENSPNYG00000003694	upf1	64	92.405	ENSLACG00000008482	UPF1	100	90.642	Latimeria_chalumnae
ENSPNYG00000003694	upf1	100	93.525	ENSLOCG00000002072	upf1	100	92.806	Lepisosteus_oculatus
ENSPNYG00000003694	upf1	100	90.096	ENSLAFG00000014963	UPF1	100	88.840	Loxodonta_africana
ENSPNYG00000003694	upf1	100	90.661	ENSMFAG00000037748	UPF1	100	89.483	Macaca_fascicularis
ENSPNYG00000003694	upf1	100	90.422	ENSMMUG00000023286	UPF1	100	89.248	Macaca_mulatta
ENSPNYG00000003694	upf1	100	90.661	ENSMNEG00000000046	UPF1	100	89.483	Macaca_nemestrina
ENSPNYG00000003694	upf1	95	92.105	ENSMLEG00000028404	UPF1	99	90.748	Mandrillus_leucophaeus
ENSPNYG00000003694	upf1	100	97.312	ENSMAMG00000006229	upf1	100	97.312	Mastacembelus_armatus
ENSPNYG00000003694	upf1	100	92.370	ENSMAMG00000006231	-	100	92.101	Mastacembelus_armatus
ENSPNYG00000003694	upf1	100	100.000	ENSMZEG00005003489	upf1	100	100.000	Maylandia_zebra
ENSPNYG00000003694	upf1	100	92.453	ENSMZEG00005016386	-	100	92.183	Maylandia_zebra
ENSPNYG00000003694	upf1	95	92.019	ENSMGAG00000004745	UPF1	100	90.663	Meleagris_gallopavo
ENSPNYG00000003694	upf1	95	91.823	ENSMAUG00000011398	Upf1	95	90.561	Mesocricetus_auratus
ENSPNYG00000003694	upf1	100	90.989	ENSMICG00000001659	UPF1	100	89.807	Microcebus_murinus
ENSPNYG00000003694	upf1	100	90.158	ENSMOCG00000005699	Upf1	100	89.161	Microtus_ochrogaster
ENSPNYG00000003694	upf1	100	95.586	ENSMMOG00000007881	upf1	100	95.586	Mola_mola
ENSPNYG00000003694	upf1	95	89.782	ENSMMOG00000007537	-	99	89.499	Mola_mola
ENSPNYG00000003694	upf1	100	90.140	ENSMODG00000003689	UPF1	100	89.062	Monodelphis_domestica
ENSPNYG00000003694	upf1	100	95.315	ENSMALG00000000144	upf1	100	95.315	Monopterus_albus
ENSPNYG00000003694	upf1	100	91.226	ENSMALG00000018100	-	100	90.958	Monopterus_albus
ENSPNYG00000003694	upf1	100	90.949	MGP_CAROLIEiJ_G0031142	Upf1	100	89.850	Mus_caroli
ENSPNYG00000003694	upf1	100	90.949	ENSMUSG00000058301	Upf1	100	89.850	Mus_musculus
ENSPNYG00000003694	upf1	100	90.949	MGP_PahariEiJ_G0021607	Upf1	100	89.850	Mus_pahari
ENSPNYG00000003694	upf1	100	90.949	MGP_SPRETEiJ_G0032260	Upf1	100	89.850	Mus_spretus
ENSPNYG00000003694	upf1	100	91.078	ENSMPUG00000015516	UPF1	100	89.895	Mustela_putorius_furo
ENSPNYG00000003694	upf1	99	90.957	ENSMLUG00000012122	UPF1	99	89.771	Myotis_lucifugus
ENSPNYG00000003694	upf1	100	89.746	ENSNGAG00000024107	Upf1	100	88.666	Nannospalax_galili
ENSPNYG00000003694	upf1	100	96.754	ENSNBRG00000000670	upf1	100	96.754	Neolamprologus_brichardi
ENSPNYG00000003694	upf1	100	89.081	ENSNBRG00000022069	-	100	91.258	Neolamprologus_brichardi
ENSPNYG00000003694	upf1	95	86.466	ENSNLEG00000006062	UPF1	99	85.140	Nomascus_leucogenys
ENSPNYG00000003694	upf1	83	86.424	ENSMEUG00000014146	-	83	83.743	Notamacropus_eugenii
ENSPNYG00000003694	upf1	95	86.610	ENSOPRG00000014018	UPF1	99	85.080	Ochotona_princeps
ENSPNYG00000003694	upf1	100	91.184	ENSODEG00000012426	UPF1	100	89.991	Octodon_degus
ENSPNYG00000003694	upf1	100	99.729	ENSONIG00000010452	upf1	100	99.729	Oreochromis_niloticus
ENSPNYG00000003694	upf1	100	92.543	ENSONIG00000012729	-	100	92.183	Oreochromis_niloticus
ENSPNYG00000003694	upf1	100	90.263	ENSOANG00000004568	UPF1	100	88.996	Ornithorhynchus_anatinus
ENSPNYG00000003694	upf1	100	92.543	ENSORLG00000008453	upf1	100	91.734	Oryzias_latipes
ENSPNYG00000003694	upf1	100	92.460	ENSORLG00020014758	upf1	100	91.652	Oryzias_latipes_hni
ENSPNYG00000003694	upf1	100	92.460	ENSORLG00015010165	upf1	100	91.652	Oryzias_latipes_hsok
ENSPNYG00000003694	upf1	100	92.992	ENSOMEG00000003665	upf1	100	92.183	Oryzias_melastigma
ENSPNYG00000003694	upf1	100	90.989	ENSOGAG00000012866	UPF1	100	89.807	Otolemur_garnettii
ENSPNYG00000003694	upf1	96	89.263	ENSOARG00000010739	UPF1	100	87.873	Ovis_aries
ENSPNYG00000003694	upf1	95	92.041	ENSPPAG00000043884	UPF1	96	90.689	Pan_paniscus
ENSPNYG00000003694	upf1	100	90.201	ENSPPRG00000023470	UPF1	100	89.034	Panthera_pardus
ENSPNYG00000003694	upf1	95	91.090	ENSPTIG00000010159	UPF1	99	89.727	Panthera_tigris_altaica
ENSPNYG00000003694	upf1	100	90.661	ENSPTRG00000010721	UPF1	100	89.483	Pan_troglodytes
ENSPNYG00000003694	upf1	100	90.661	ENSPANG00000008847	UPF1	100	89.483	Papio_anubis
ENSPNYG00000003694	upf1	92	94.701	ENSPKIG00000006069	upf1	95	96.862	Paramormyrops_kingsleyae
ENSPNYG00000003694	upf1	70	91.260	ENSPSIG00000009491	UPF1	100	89.413	Pelodiscus_sinensis
ENSPNYG00000003694	upf1	100	92.806	ENSPMGG00000017327	upf1	100	92.742	Periophthalmus_magnuspinnatus
ENSPNYG00000003694	upf1	100	90.158	ENSPEMG00000001085	Upf1	100	89.073	Peromyscus_maniculatus_bairdii
ENSPNYG00000003694	upf1	100	86.786	ENSPMAG00000001206	upf1	100	86.161	Petromyzon_marinus
ENSPNYG00000003694	upf1	100	91.512	ENSPCIG00000006156	UPF1	100	90.325	Phascolarctos_cinereus
ENSPNYG00000003694	upf1	100	92.273	ENSPLAG00000016232	-	100	91.935	Poecilia_latipinna
ENSPNYG00000003694	upf1	100	95.041	ENSPLAG00000018155	-	100	95.041	Poecilia_latipinna
ENSPNYG00000003694	upf1	100	92.190	ENSPMEG00000016319	-	100	91.853	Poecilia_mexicana
ENSPNYG00000003694	upf1	100	94.680	ENSPMEG00000011443	-	100	93.688	Poecilia_mexicana
ENSPNYG00000003694	upf1	100	94.689	ENSPREG00000009940	upf1	100	93.621	Poecilia_reticulata
ENSPNYG00000003694	upf1	100	92.183	ENSPREG00000011247	-	100	91.846	Poecilia_reticulata
ENSPNYG00000003694	upf1	100	84.952	ENSPPYG00000009752	UPF1	100	83.695	Pongo_abelii
ENSPNYG00000003694	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSPNYG00000003694	upf1	100	90.677	ENSPCOG00000023813	UPF1	100	89.501	Propithecus_coquereli
ENSPNYG00000003694	upf1	67	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSPNYG00000003694	upf1	100	94.239	ENSPNAG00000025614	upf1	100	93.560	Pygocentrus_nattereri
ENSPNYG00000003694	upf1	100	90.949	ENSRNOG00000020134	Upf1	100	89.850	Rattus_norvegicus
ENSPNYG00000003694	upf1	95	89.756	ENSRBIG00000013894	UPF1	98	91.309	Rhinopithecus_bieti
ENSPNYG00000003694	upf1	95	92.105	ENSRROG00000040935	UPF1	98	91.309	Rhinopithecus_roxellana
ENSPNYG00000003694	upf1	72	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSPNYG00000003694	upf1	95	92.098	ENSSBOG00000023632	UPF1	96	90.739	Saimiri_boliviensis_boliviensis
ENSPNYG00000003694	upf1	95	92.402	ENSSHAG00000010499	UPF1	100	91.045	Sarcophilus_harrisii
ENSPNYG00000003694	upf1	100	93.531	ENSSFOG00015021095	upf1	100	92.500	Scleropages_formosus
ENSPNYG00000003694	upf1	100	96.679	ENSSMAG00000005055	upf1	100	96.679	Scophthalmus_maximus
ENSPNYG00000003694	upf1	100	92.639	ENSSMAG00000021018	-	100	92.280	Scophthalmus_maximus
ENSPNYG00000003694	upf1	100	97.581	ENSSDUG00000013320	upf1	100	97.581	Seriola_dumerili
ENSPNYG00000003694	upf1	100	92.549	ENSSDUG00000009629	-	100	92.280	Seriola_dumerili
ENSPNYG00000003694	upf1	100	96.864	ENSSLDG00000020868	upf1	100	96.864	Seriola_lalandi_dorsalis
ENSPNYG00000003694	upf1	100	92.549	ENSSLDG00000006878	-	100	92.280	Seriola_lalandi_dorsalis
ENSPNYG00000003694	upf1	100	91.533	ENSSPUG00000010538	UPF1	100	92.916	Sphenodon_punctatus
ENSPNYG00000003694	upf1	100	94.054	ENSSPAG00000000003	upf1	100	94.054	Stegastes_partitus
ENSPNYG00000003694	upf1	100	92.902	ENSSPAG00000011521	-	100	92.273	Stegastes_partitus
ENSPNYG00000003694	upf1	100	91.231	ENSSSCG00000039301	UPF1	99	91.706	Sus_scrofa
ENSPNYG00000003694	upf1	82	87.340	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSPNYG00000003694	upf1	100	91.644	ENSTRUG00000005131	-	100	91.145	Takifugu_rubripes
ENSPNYG00000003694	upf1	100	94.699	ENSTRUG00000000150	upf1	100	94.409	Takifugu_rubripes
ENSPNYG00000003694	upf1	100	87.600	ENSTTRG00000011544	UPF1	100	86.344	Tursiops_truncatus
ENSPNYG00000003694	upf1	100	91.078	ENSUAMG00000007093	UPF1	100	89.895	Ursus_americanus
ENSPNYG00000003694	upf1	95	93.175	ENSUMAG00000006652	UPF1	99	91.963	Ursus_maritimus
ENSPNYG00000003694	upf1	100	91.078	ENSVVUG00000007797	UPF1	100	89.895	Vulpes_vulpes
ENSPNYG00000003694	upf1	100	78.640	ENSXETG00000013602	upf1	100	77.768	Xenopus_tropicalis
ENSPNYG00000003694	upf1	97	93.197	ENSXCOG00000015275	-	96	93.197	Xiphophorus_couchianus
ENSPNYG00000003694	upf1	94	92.426	ENSXCOG00000005764	-	99	92.065	Xiphophorus_couchianus
ENSPNYG00000003694	upf1	100	92.280	ENSXMAG00000002540	-	100	91.943	Xiphophorus_maculatus
ENSPNYG00000003694	upf1	100	93.237	ENSXMAG00000001703	-	100	93.237	Xiphophorus_maculatus