EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPNYG00000004405 (Gene tree)
Gene ID
102205431
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Pundamilia_nyererei
Status
putative
Strand
Minus strand
Length
10355 bases
Position
chrJH419253.1:3288363-3298717
Accession
102205431
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNYP00000005729CPSF73-100_CPF11718.86.8e-5311
ENSPNYP00000005756CPSF73-100_CPF11718.83.8e-5111
ENSPNYP00000005756Beta-CaspPF10996.89.4e-3411
ENSPNYP00000005729Beta-CaspPF10996.81.1e-3311
ENSPNYP00000005729Lactamase_BPF00753.271.8e-1811
ENSPNYP00000005756Lactamase_BPF00753.274.4e-0811
ENSPNYP00000005756RMMBLPF07521.121.5e-2111
ENSPNYP00000005729RMMBLPF07521.121.8e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNYT00000005877-5267XM_013910756ENSPNYP00000005729686 (aa)XP_013766210UPI0003297CFD
ENSPNYT00000005905-1881-ENSPNYP00000005756626 (aa)--
Gene Model
Click here to download ENSPNYG00000004405's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000004405's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPNYG00000004405cpsf37137.675ENSPNYG00000021238ints118237.675
ENSPNYG00000004405cpsf38891.971ENSPNYG00000021047CPSF39191.971
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNYG00000004405cpsf39985.609ENSG00000119203CPSF310098.529Homo_sapiens
ENSPNYG00000004405cpsf37496.660ENSAPOG00000012241CPSF39196.660Acanthochromis_polyacanthus
ENSPNYG00000004405cpsf310095.481ENSAPOG00000022087cpsf310095.481Acanthochromis_polyacanthus
ENSPNYG00000004405cpsf39985.756ENSAMEG00000008493CPSF39985.756Ailuropoda_melanoleuca
ENSPNYG00000004405cpsf39986.614ENSACIG00000023663CPSF39986.614Amphilophus_citrinellus
ENSPNYG00000004405cpsf310094.620ENSACIG00000009846cpsf310094.620Amphilophus_citrinellus
ENSPNYG00000004405cpsf39988.808ENSAOCG00000010077CPSF39988.808Amphiprion_ocellaris
ENSPNYG00000004405cpsf310095.481ENSAOCG00000022056cpsf310095.481Amphiprion_ocellaris
ENSPNYG00000004405cpsf310095.627ENSAPEG00000019526cpsf310095.627Amphiprion_percula
ENSPNYG00000004405cpsf39988.808ENSAPEG00000021167CPSF39988.808Amphiprion_percula
ENSPNYG00000004405cpsf39984.157ENSATEG00000014525CPSF39984.157Anabas_testudineus
ENSPNYG00000004405cpsf39995.029ENSATEG00000003959cpsf39995.029Anabas_testudineus
ENSPNYG00000004405cpsf39785.672ENSAPLG00000006941CPSF39885.672Anas_platyrhynchos
ENSPNYG00000004405cpsf39981.616ENSACAG00000001759CPSF39983.438Anolis_carolinensis
ENSPNYG00000004405cpsf39980.764ENSANAG00000031254CPSF39981.381Aotus_nancymaae
ENSPNYG00000004405cpsf39986.614ENSACLG00000018846CPSF39986.614Astatotilapia_calliptera
ENSPNYG00000004405cpsf3100100.000ENSACLG00000014484cpsf3100100.000Astatotilapia_calliptera
ENSPNYG00000004405cpsf39986.773ENSAMXG00000004786cpsf39986.773Astyanax_mexicanus
ENSPNYG00000004405cpsf39985.756ENSBTAG00000019735CPSF39985.756Bos_taurus
ENSPNYG00000004405cpsf39057.571WBGene00013460cpsf-38957.571Caenorhabditis_elegans
ENSPNYG00000004405cpsf39985.463ENSCJAG00000006276CPSF39985.463Callithrix_jacchus
ENSPNYG00000004405cpsf39985.756ENSCAFG00000003375CPSF39585.756Canis_familiaris
ENSPNYG00000004405cpsf39088.511ENSCAFG00020026799CPSF39988.511Canis_lupus_dingo
ENSPNYG00000004405cpsf39985.756ENSCHIG00000013973CPSF39985.756Capra_hircus
ENSPNYG00000004405cpsf39985.609ENSTSYG00000002967CPSF39985.609Carlito_syrichta
ENSPNYG00000004405cpsf39983.599ENSCAPG00000013851CPSF39986.015Cavia_aperea
ENSPNYG00000004405cpsf39985.903ENSCPOG00000011299CPSF39985.903Cavia_porcellus
ENSPNYG00000004405cpsf39985.463ENSCCAG00000036730CPSF39985.586Cebus_capucinus
ENSPNYG00000004405cpsf39983.700ENSCATG00000014770CPSF39991.207Cercocebus_atys
ENSPNYG00000004405cpsf39985.903ENSCLAG00000002727CPSF39985.903Chinchilla_lanigera
ENSPNYG00000004405cpsf39977.827ENSCSAG00000007125CPSF39977.827Chlorocebus_sabaeus
ENSPNYG00000004405cpsf385100.000ENSCHOG00000000180CPSF38561.268Choloepus_hoffmanni
ENSPNYG00000004405cpsf39985.776ENSCPBG00000014074CPSF39985.776Chrysemys_picta_bellii
ENSPNYG00000004405cpsf39966.930ENSCING00000007214-9767.742Ciona_intestinalis
ENSPNYG00000004405cpsf39975.656ENSCANG00000034435CPSF39975.656Colobus_angolensis_palliatus
ENSPNYG00000004405cpsf39985.316ENSCGRG00001013134Cpsf39985.316Cricetulus_griseus_chok1gshd
ENSPNYG00000004405cpsf39985.316ENSCGRG00000018319Cpsf39985.316Cricetulus_griseus_crigri
ENSPNYG00000004405cpsf39987.083ENSCSEG00000002021CPSF39987.287Cynoglossus_semilaevis
ENSPNYG00000004405cpsf39988.081ENSCVAG00000015067CPSF39988.081Cyprinodon_variegatus
ENSPNYG00000004405cpsf310086.812ENSDARG00000027649cpsf310086.812Danio_rerio
ENSPNYG00000004405cpsf39984.751ENSDNOG00000008940CPSF39584.751Dasypus_novemcinctus
ENSPNYG00000004405cpsf39587.385ENSDORG00000014263Cpsf39987.385Dipodomys_ordii
ENSPNYG00000004405cpsf39967.841FBgn0261065Cpsf739967.841Drosophila_melanogaster
ENSPNYG00000004405cpsf39574.769ENSETEG00000003893CPSF39974.769Echinops_telfairi
ENSPNYG00000004405cpsf39975.989ENSEBUG00000009018cpsf39975.989Eptatretus_burgeri
ENSPNYG00000004405cpsf39985.756ENSEASG00005003970CPSF39985.756Equus_asinus_asinus
ENSPNYG00000004405cpsf39985.756ENSECAG00000019911CPSF39690.909Equus_caballus
ENSPNYG00000004405cpsf39970.778ENSEEUG00000015422CPSF39970.778Erinaceus_europaeus
ENSPNYG00000004405cpsf39990.421ENSELUG00000013775cpsf39990.421Esox_lucius
ENSPNYG00000004405cpsf39985.756ENSFCAG00000007852CPSF39985.756Felis_catus
ENSPNYG00000004405cpsf39983.016ENSFALG00000006572CPSF310085.162Ficedula_albicollis
ENSPNYG00000004405cpsf39985.609ENSFDAG00000006317CPSF39985.609Fukomys_damarensis
ENSPNYG00000004405cpsf310093.003ENSFHEG00000014774cpsf310093.003Fundulus_heteroclitus
ENSPNYG00000004405cpsf36366.829ENSFHEG00000012186CPSF310067.317Fundulus_heteroclitus
ENSPNYG00000004405cpsf310090.856ENSGMOG00000003157cpsf310090.856Gadus_morhua
ENSPNYG00000004405cpsf39985.341ENSGALG00000016424CPSF39985.341Gallus_gallus
ENSPNYG00000004405cpsf310092.846ENSGAFG00000019449cpsf310092.846Gambusia_affinis
ENSPNYG00000004405cpsf310088.406ENSGAFG00000008016CPSF310088.406Gambusia_affinis
ENSPNYG00000004405cpsf37380.942ENSGAGG00000025583CPSF39381.370Gopherus_agassizii
ENSPNYG00000004405cpsf39983.477ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSPNYG00000004405cpsf3100100.000ENSHBUG00000001188cpsf3100100.000Haplochromis_burtoni
ENSPNYG00000004405cpsf36379.602ENSHBUG00000014332CPSF310080.000Haplochromis_burtoni
ENSPNYG00000004405cpsf39985.463ENSHGLG00000000666CPSF39985.463Heterocephalus_glaber_female
ENSPNYG00000004405cpsf39985.463ENSHGLG00100007765CPSF39985.463Heterocephalus_glaber_male
ENSPNYG00000004405cpsf39991.959ENSHCOG00000007251cpsf39991.959Hippocampus_comes
ENSPNYG00000004405cpsf39986.919ENSHCOG00000015957CPSF39986.919Hippocampus_comes
ENSPNYG00000004405cpsf39987.645ENSIPUG00000023488cpsf39987.645Ictalurus_punctatus
ENSPNYG00000004405cpsf39985.316ENSSTOG00000004476CPSF39985.316Ictidomys_tridecemlineatus
ENSPNYG00000004405cpsf39985.212ENSJJAG00000023415Cpsf39985.212Jaculus_jaculus
ENSPNYG00000004405cpsf310094.023ENSKMAG00000002806cpsf310094.023Kryptolebias_marmoratus
ENSPNYG00000004405cpsf39987.645ENSKMAG00000007317CPSF39987.645Kryptolebias_marmoratus
ENSPNYG00000004405cpsf35990.217ENSLBEG00000015018-9990.217Labrus_bergylta
ENSPNYG00000004405cpsf39688.939ENSLBEG00000013492CPSF39988.939Labrus_bergylta
ENSPNYG00000004405cpsf39985.526ENSLBEG00000020569cpsf39685.526Labrus_bergylta
ENSPNYG00000004405cpsf39979.855ENSLACG00000008308CPSF39979.855Latimeria_chalumnae
ENSPNYG00000004405cpsf310086.869ENSLOCG00000016823cpsf310086.869Lepisosteus_oculatus
ENSPNYG00000004405cpsf39884.808ENSLAFG00000009467CPSF39984.808Loxodonta_africana
ENSPNYG00000004405cpsf39985.463ENSMFAG00000001339CPSF39593.568Macaca_fascicularis
ENSPNYG00000004405cpsf39983.121ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSPNYG00000004405cpsf39096.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSPNYG00000004405cpsf39985.609ENSMLEG00000026825CPSF39396.154Mandrillus_leucophaeus
ENSPNYG00000004405cpsf310093.586ENSMAMG00000003076cpsf310093.586Mastacembelus_armatus
ENSPNYG00000004405cpsf39986.984ENSMAMG00000008835CPSF39986.984Mastacembelus_armatus
ENSPNYG00000004405cpsf39988.227ENSMZEG00005006258CPSF39988.227Maylandia_zebra
ENSPNYG00000004405cpsf3100100.000ENSMZEG00005014358cpsf3100100.000Maylandia_zebra
ENSPNYG00000004405cpsf39785.457ENSMGAG00000013995CPSF310085.457Meleagris_gallopavo
ENSPNYG00000004405cpsf35875.401ENSMAUG00000000166Cpsf39975.668Mesocricetus_auratus
ENSPNYG00000004405cpsf39981.113ENSMICG00000002363CPSF39981.113Microcebus_murinus
ENSPNYG00000004405cpsf39982.232ENSMOCG00000020067Cpsf39982.232Microtus_ochrogaster
ENSPNYG00000004405cpsf39885.831ENSMMOG00000018212CPSF39886.739Mola_mola
ENSPNYG00000004405cpsf37878.014ENSMMOG00000011923CPSF38578.014Mola_mola
ENSPNYG00000004405cpsf39984.012ENSMODG00000014703CPSF39984.012Monodelphis_domestica
ENSPNYG00000004405cpsf310094.606ENSMALG00000016416cpsf310094.606Monopterus_albus
ENSPNYG00000004405cpsf39684.539ENSMALG00000011474CPSF39983.937Monopterus_albus
ENSPNYG00000004405cpsf39985.609MGP_CAROLIEiJ_G0017640Cpsf39985.609Mus_caroli
ENSPNYG00000004405cpsf39985.609ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSPNYG00000004405cpsf39985.463MGP_PahariEiJ_G0029397Cpsf39985.463Mus_pahari
ENSPNYG00000004405cpsf39985.609MGP_SPRETEiJ_G0018481Cpsf39985.609Mus_spretus
ENSPNYG00000004405cpsf39985.924ENSMPUG00000013213CPSF39985.924Mustela_putorius_furo
ENSPNYG00000004405cpsf39985.630ENSMLUG00000010636CPSF39985.630Myotis_lucifugus
ENSPNYG00000004405cpsf39985.316ENSNGAG00000019836Cpsf39985.316Nannospalax_galili
ENSPNYG00000004405cpsf310099.271ENSNBRG00000004770cpsf310099.271Neolamprologus_brichardi
ENSPNYG00000004405cpsf39986.614ENSNBRG00000010525CPSF39986.614Neolamprologus_brichardi
ENSPNYG00000004405cpsf39985.463ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSPNYG00000004405cpsf39955.066ENSMEUG00000013117-9955.066Notamacropus_eugenii
ENSPNYG00000004405cpsf39977.273ENSOPRG00000008902CPSF39977.273Ochotona_princeps
ENSPNYG00000004405cpsf39986.050ENSODEG00000003129CPSF39986.050Octodon_degus
ENSPNYG00000004405cpsf310098.980ENSONIG00000018812cpsf310098.980Oreochromis_niloticus
ENSPNYG00000004405cpsf38883.096ENSOANG00000008577CPSF39983.452Ornithorhynchus_anatinus
ENSPNYG00000004405cpsf39985.756ENSOCUG00000003728CPSF39985.756Oryctolagus_cuniculus
ENSPNYG00000004405cpsf310092.128ENSORLG00000018854cpsf310092.128Oryzias_latipes
ENSPNYG00000004405cpsf310092.274ENSORLG00020013331cpsf310092.274Oryzias_latipes_hni
ENSPNYG00000004405cpsf310092.128ENSORLG00015011017cpsf310092.128Oryzias_latipes_hsok
ENSPNYG00000004405cpsf310092.420ENSOMEG00000010647cpsf39692.420Oryzias_melastigma
ENSPNYG00000004405cpsf39975.771ENSOGAG00000001680CPSF39975.771Otolemur_garnettii
ENSPNYG00000004405cpsf39985.756ENSOARG00000015073CPSF39985.756Ovis_aries
ENSPNYG00000004405cpsf39985.609ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSPNYG00000004405cpsf39985.756ENSPPRG00000016790CPSF39985.903Panthera_pardus
ENSPNYG00000004405cpsf39886.136ENSPTIG00000003920CPSF39986.283Panthera_tigris_altaica
ENSPNYG00000004405cpsf39985.609ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSPNYG00000004405cpsf39985.609ENSPANG00000016798CPSF39593.568Papio_anubis
ENSPNYG00000004405cpsf310088.116ENSPKIG00000023646cpsf310088.116Paramormyrops_kingsleyae
ENSPNYG00000004405cpsf39985.044ENSPSIG00000016144CPSF39985.044Pelodiscus_sinensis
ENSPNYG00000004405cpsf310087.380ENSPMGG00000006141-10087.380Periophthalmus_magnuspinnatus
ENSPNYG00000004405cpsf36380.050ENSPMGG00000015311CPSF310080.050Periophthalmus_magnuspinnatus
ENSPNYG00000004405cpsf39985.316ENSPEMG00000017668Cpsf39985.463Peromyscus_maniculatus_bairdii
ENSPNYG00000004405cpsf37989.319ENSPMAG00000004841cpsf39989.319Petromyzon_marinus
ENSPNYG00000004405cpsf39982.643ENSPCIG00000009823CPSF39886.043Phascolarctos_cinereus
ENSPNYG00000004405cpsf310093.440ENSPFOG00000015922cpsf310093.440Poecilia_formosa
ENSPNYG00000004405cpsf310087.971ENSPFOG00000010418-10087.971Poecilia_formosa
ENSPNYG00000004405cpsf310093.440ENSPLAG00000000882cpsf310093.440Poecilia_latipinna
ENSPNYG00000004405cpsf36380.741ENSPLAG00000021300-10081.481Poecilia_latipinna
ENSPNYG00000004405cpsf310093.586ENSPMEG00000018309cpsf310093.586Poecilia_mexicana
ENSPNYG00000004405cpsf310082.464ENSPREG00000004482CPSF310082.464Poecilia_reticulata
ENSPNYG00000004405cpsf310093.142ENSPREG00000014875cpsf310093.142Poecilia_reticulata
ENSPNYG00000004405cpsf39981.351ENSPPYG00000012666CPSF39981.351Pongo_abelii
ENSPNYG00000004405cpsf38664.728ENSPCAG00000015042CPSF39064.728Procavia_capensis
ENSPNYG00000004405cpsf38885.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSPNYG00000004405cpsf39985.630ENSPVAG00000005324CPSF39985.630Pteropus_vampyrus
ENSPNYG00000004405cpsf39987.936ENSPNAG00000023060cpsf39987.936Pygocentrus_nattereri
ENSPNYG00000004405cpsf39985.609ENSRNOG00000052418Cpsf39985.609Rattus_norvegicus
ENSPNYG00000004405cpsf39980.176ENSRBIG00000041615CPSF39981.240Rhinopithecus_bieti
ENSPNYG00000004405cpsf39985.609ENSRROG00000033792CPSF39985.609Rhinopithecus_roxellana
ENSPNYG00000004405cpsf38841.135YLR277CYSH19041.135Saccharomyces_cerevisiae
ENSPNYG00000004405cpsf39979.114ENSSBOG00000027263CPSF39781.764Saimiri_boliviensis_boliviensis
ENSPNYG00000004405cpsf39985.316ENSSHAG00000007024CPSF39985.316Sarcophilus_harrisii
ENSPNYG00000004405cpsf310087.826ENSSFOG00015002108cpsf310087.826Scleropages_formosus
ENSPNYG00000004405cpsf39688.146ENSSMAG00000020534CPSF39788.146Scophthalmus_maximus
ENSPNYG00000004405cpsf39988.081ENSSDUG00000018498CPSF39988.081Seriola_dumerili
ENSPNYG00000004405cpsf310094.606ENSSDUG00000002828cpsf39794.606Seriola_dumerili
ENSPNYG00000004405cpsf39988.081ENSSLDG00000005234CPSF39988.081Seriola_lalandi_dorsalis
ENSPNYG00000004405cpsf310094.315ENSSLDG00000008469cpsf39794.315Seriola_lalandi_dorsalis
ENSPNYG00000004405cpsf39083.302ENSSARG00000005186CPSF39083.302Sorex_araneus
ENSPNYG00000004405cpsf39982.437ENSSPUG00000015525CPSF39784.753Sphenodon_punctatus
ENSPNYG00000004405cpsf310094.898ENSSPAG00000018579cpsf310094.898Stegastes_partitus
ENSPNYG00000004405cpsf39988.372ENSSPAG00000002906CPSF39988.372Stegastes_partitus
ENSPNYG00000004405cpsf39985.756ENSSSCG00000020799CPSF39985.756Sus_scrofa
ENSPNYG00000004405cpsf39985.380ENSTGUG00000013016CPSF310085.380Taeniopygia_guttata
ENSPNYG00000004405cpsf39991.825ENSTRUG00000007030cpsf39891.825Takifugu_rubripes
ENSPNYG00000004405cpsf36373.183ENSTRUG00000013905CPSF39973.183Takifugu_rubripes
ENSPNYG00000004405cpsf38490.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSPNYG00000004405cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSPNYG00000004405cpsf39686.910ENSUAMG00000007535CPSF39486.910Ursus_americanus
ENSPNYG00000004405cpsf39983.439ENSUMAG00000003676CPSF39490.860Ursus_maritimus
ENSPNYG00000004405cpsf39286.435ENSVPAG00000008041CPSF310086.435Vicugna_pacos
ENSPNYG00000004405cpsf39985.756ENSVVUG00000002194CPSF39985.756Vulpes_vulpes
ENSPNYG00000004405cpsf39984.638ENSXETG00000008263cpsf39984.638Xenopus_tropicalis
ENSPNYG00000004405cpsf310093.149ENSXCOG00000019695cpsf310093.149Xiphophorus_couchianus
ENSPNYG00000004405cpsf35879.032ENSXCOG00000000957-8779.839Xiphophorus_couchianus
ENSPNYG00000004405cpsf310093.440ENSXMAG00000009784cpsf310093.440Xiphophorus_maculatus
ENSPNYG00000004405cpsf310088.261ENSXMAG00000027291CPSF310088.261Xiphophorus_maculatus

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