EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000004900 (Gene tree)
Gene ID: -
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 5986 bases
Position: chrJH419239.1:2628077-2634062
Accession: ZDB-GENE-020419-26
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000006382	zf-U1	PF06220.12	7.3e-22	1	1
ENSPNYP00000006369	zf-U1	PF06220.12	7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000006528	-	372	-	ENSPNYP00000006369	123 (aa)	-	-
ENSPNYT00000006541	-	405	-	ENSPNYP00000006382	134 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000004900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000004900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000004900	snrpc	100	84.507	ENSACIG00000010867	snrpc	100	84.507	Amphilophus_citrinellus
ENSPNYG00000004900	snrpc	100	58.000	ENSANAG00000019726	-	77	57.252	Aotus_nancymaae
ENSPNYG00000004900	snrpc	100	52.830	ENSANAG00000021026	-	76	50.000	Aotus_nancymaae
ENSPNYG00000004900	snrpc	75	62.857	ENSANAG00000019157	-	84	55.970	Aotus_nancymaae
ENSPNYG00000004900	snrpc	100	47.403	ENSANAG00000021444	-	59	51.613	Aotus_nancymaae
ENSPNYG00000004900	snrpc	100	84.247	ENSACLG00000000843	snrpc	98	84.247	Astatotilapia_calliptera
ENSPNYG00000004900	snrpc	100	71.724	ENSAMXG00000032641	snrpc	82	72.727	Astyanax_mexicanus
ENSPNYG00000004900	snrpc	100	55.975	ENSCJAG00000043055	-	84	57.895	Callithrix_jacchus
ENSPNYG00000004900	snrpc	100	53.741	ENSTSYG00000025721	-	57	63.750	Carlito_syrichta
ENSPNYG00000004900	snrpc	54	76.471	ENSTSYG00000029745	-	67	61.654	Carlito_syrichta
ENSPNYG00000004900	snrpc	100	53.503	ENSCCAG00000022751	-	55	63.736	Cebus_capucinus
ENSPNYG00000004900	snrpc	100	61.240	ENSCCAG00000028293	-	64	65.060	Cebus_capucinus
ENSPNYG00000004900	snrpc	77	66.379	ENSCLAG00000010242	-	57	65.934	Chinchilla_lanigera
ENSPNYG00000004900	snrpc	60	64.211	ENSCHOG00000011439	SNRPC	75	64.179	Choloepus_hoffmanni
ENSPNYG00000004900	snrpc	100	82.313	ENSCSEG00000016845	snrpc	98	82.313	Cynoglossus_semilaevis
ENSPNYG00000004900	snrpc	100	57.962	ENSDARG00000009871	snrpc	84	67.669	Danio_rerio
ENSPNYG00000004900	snrpc	62	76.623	ENSDNOG00000042403	-	75	67.021	Dasypus_novemcinctus
ENSPNYG00000004900	snrpc	59	75.342	ENSDORG00000029823	-	54	74.324	Dipodomys_ordii
ENSPNYG00000004900	snrpc	59	70.270	ENSETEG00000011265	-	60	60.638	Echinops_telfairi
ENSPNYG00000004900	snrpc	62	75.325	ENSETEG00000008756	-	76	71.795	Echinops_telfairi
ENSPNYG00000004900	snrpc	65	72.500	ENSETEG00000008268	-	86	57.463	Echinops_telfairi
ENSPNYG00000004900	snrpc	61	63.918	ENSEEUG00000014633	SNRPC	77	64.179	Erinaceus_europaeus
ENSPNYG00000004900	snrpc	100	61.006	ENSELUG00000020489	snrpc	59	67.021	Esox_lucius
ENSPNYG00000004900	snrpc	59	65.957	ENSELUG00000000815	SNRPC	85	67.669	Esox_lucius
ENSPNYG00000004900	snrpc	70	78.505	ENSFHEG00000016667	snrpc	75	76.190	Fundulus_heteroclitus
ENSPNYG00000004900	snrpc	100	84.247	ENSHBUG00000011637	snrpc	98	84.247	Haplochromis_burtoni
ENSPNYG00000004900	snrpc	72	56.250	ENSHGLG00000005871	-	66	58.511	Heterocephalus_glaber_female
ENSPNYG00000004900	snrpc	52	78.125	ENSHGLG00000017741	-	83	57.143	Heterocephalus_glaber_female
ENSPNYG00000004900	snrpc	52	78.125	ENSHGLG00100010786	-	83	57.143	Heterocephalus_glaber_male
ENSPNYG00000004900	snrpc	100	55.346	ENSHGLG00100017764	-	69	61.468	Heterocephalus_glaber_male
ENSPNYG00000004900	snrpc	100	55.414	ENSIPUG00000024851	snrpc	84	67.669	Ictalurus_punctatus
ENSPNYG00000004900	snrpc	100	82.877	ENSLBEG00000023881	snrpc	98	82.877	Labrus_bergylta
ENSPNYG00000004900	snrpc	98	52.055	ENSMLEG00000039724	-	68	43.411	Mandrillus_leucophaeus
ENSPNYG00000004900	snrpc	100	84.247	ENSMZEG00005002199	snrpc	98	84.247	Maylandia_zebra
ENSPNYG00000004900	snrpc	54	77.778	ENSMODG00000025263	-	82	53.030	Monodelphis_domestica
ENSPNYG00000004900	snrpc	100	77.241	ENSMALG00000001197	snrpc	84	76.423	Monopterus_albus
ENSPNYG00000004900	snrpc	100	84.247	ENSONIG00000014757	snrpc	98	84.247	Oreochromis_niloticus
ENSPNYG00000004900	snrpc	54	79.412	ENSOCUG00000026430	-	83	58.209	Oryctolagus_cuniculus
ENSPNYG00000004900	snrpc	96	59.420	ENSORLG00000007308	snrpc	85	73.387	Oryzias_latipes
ENSPNYG00000004900	snrpc	68	80.000	ENSOMEG00000012014	snrpc	72	72.800	Oryzias_melastigma
ENSPNYG00000004900	snrpc	59	64.384	ENSOGAG00000028405	-	86	48.485	Otolemur_garnettii
ENSPNYG00000004900	snrpc	100	61.832	ENSPPRG00000010967	-	58	56.322	Panthera_pardus
ENSPNYG00000004900	snrpc	100	59.843	ENSPTIG00000011880	-	74	52.427	Panthera_tigris_altaica
ENSPNYG00000004900	snrpc	65	60.494	ENSPTIG00000013329	-	61	56.989	Panthera_tigris_altaica
ENSPNYG00000004900	snrpc	59	65.957	ENSPKIG00000003136	snrpc	86	67.910	Paramormyrops_kingsleyae
ENSPNYG00000004900	snrpc	100	56.051	ENSPKIG00000001671	SNRPC	85	57.463	Paramormyrops_kingsleyae
ENSPNYG00000004900	snrpc	100	88.321	ENSPMGG00000022162	snrpc	98	88.321	Periophthalmus_magnuspinnatus
ENSPNYG00000004900	snrpc	100	58.333	ENSPEMG00000002763	-	83	56.154	Peromyscus_maniculatus_bairdii
ENSPNYG00000004900	snrpc	100	65.734	ENSPREG00000013017	snrpc	67	65.289	Poecilia_reticulata
ENSPNYG00000004900	snrpc	62	76.623	ENSPPYG00000029902	-	51	100.000	Pongo_abelii
ENSPNYG00000004900	snrpc	100	67.333	ENSPNAG00000012799	snrpc	84	68.939	Pygocentrus_nattereri
ENSPNYG00000004900	snrpc	98	55.195	ENSSBOG00000023189	-	78	55.224	Saimiri_boliviensis_boliviensis
ENSPNYG00000004900	snrpc	100	52.980	ENSSBOG00000032882	-	54	67.901	Saimiri_boliviensis_boliviensis
ENSPNYG00000004900	snrpc	54	77.778	ENSSHAG00000002972	-	82	53.030	Sarcophilus_harrisii
ENSPNYG00000004900	snrpc	53	80.303	ENSSFOG00015019150	snrpc	84	63.910	Scleropages_formosus
ENSPNYG00000004900	snrpc	56	68.889	ENSSFOG00015022422	snrpc	87	60.741	Scleropages_formosus
ENSPNYG00000004900	snrpc	100	60.959	ENSTRUG00000021651	snrpc	84	73.171	Takifugu_rubripes
ENSPNYG00000004900	snrpc	100	66.667	ENSTNIG00000018307	snrpc	85	64.964	Tetraodon_nigroviridis
ENSPNYG00000004900	snrpc	98	62.581	ENSVVUG00000010467	-	75	59.259	Vulpes_vulpes