EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000004906 (Gene tree)
Gene ID: 102200048
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 18944 bases
Position: chrJH419361.1:1299027-1317970
Accession: 102200048
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000006572	CPSF_A	PF03178.15	8e-93	1	1
ENSPNYP00000006532	CPSF_A	PF03178.15	9.5e-93	1	1
ENSPNYP00000006490	CPSF_A	PF03178.15	2.8e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000006653	-	4669	-	ENSPNYP00000006490	1426 (aa)	-	-
ENSPNYT00000006695	-	4577	XM_005745255	ENSPNYP00000006532	1470 (aa)	XP_005745312	UPI0003AF8F9F
ENSPNYT00000006735	-	4329	-	ENSPNYP00000006572	1442 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000004906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000004906's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000004906	cpsf1	100	78.294	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSPNYG00000004906	cpsf1	100	94.229	ENSAPOG00000019621	cpsf1	100	94.840	Acanthochromis_polyacanthus
ENSPNYG00000004906	cpsf1	99	77.519	ENSAMEG00000005557	CPSF1	99	77.449	Ailuropoda_melanoleuca
ENSPNYG00000004906	cpsf1	100	92.656	ENSACIG00000006112	cpsf1	100	92.862	Amphilophus_citrinellus
ENSPNYG00000004906	cpsf1	100	91.814	ENSAOCG00000007120	cpsf1	100	91.746	Amphiprion_ocellaris
ENSPNYG00000004906	cpsf1	100	92.784	ENSAPEG00000005755	cpsf1	100	92.784	Amphiprion_percula
ENSPNYG00000004906	cpsf1	100	93.085	ENSATEG00000011097	cpsf1	100	93.831	Anabas_testudineus
ENSPNYG00000004906	cpsf1	93	74.250	ENSACAG00000009655	CPSF1	100	74.085	Anolis_carolinensis
ENSPNYG00000004906	cpsf1	100	78.484	ENSANAG00000036514	CPSF1	100	78.757	Aotus_nancymaae
ENSPNYG00000004906	cpsf1	100	99.790	ENSACLG00000012231	cpsf1	100	99.790	Astatotilapia_calliptera
ENSPNYG00000004906	cpsf1	100	79.917	ENSAMXG00000008485	cpsf1	100	79.917	Astyanax_mexicanus
ENSPNYG00000004906	cpsf1	100	77.331	ENSBTAG00000008355	CPSF1	100	78.014	Bos_taurus
ENSPNYG00000004906	cpsf1	100	32.220	WBGene00022301	cpsf-1	99	41.408	Caenorhabditis_elegans
ENSPNYG00000004906	cpsf1	100	78.825	ENSCJAG00000021421	CPSF1	100	78.689	Callithrix_jacchus
ENSPNYG00000004906	cpsf1	99	78.773	ENSCAFG00000001600	CPSF1	100	79.910	Canis_familiaris
ENSPNYG00000004906	cpsf1	100	78.172	ENSCAFG00020020821	CPSF1	100	78.308	Canis_lupus_dingo
ENSPNYG00000004906	cpsf1	100	74.983	ENSCHIG00000015833	CPSF1	100	74.778	Capra_hircus
ENSPNYG00000004906	cpsf1	100	79.167	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSPNYG00000004906	cpsf1	99	78.239	ENSCAPG00000014921	CPSF1	99	78.123	Cavia_aperea
ENSPNYG00000004906	cpsf1	100	77.664	ENSCPOG00000011448	CPSF1	100	77.527	Cavia_porcellus
ENSPNYG00000004906	cpsf1	100	79.030	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSPNYG00000004906	cpsf1	100	78.104	ENSCATG00000037234	CPSF1	100	79.167	Cercocebus_atys
ENSPNYG00000004906	cpsf1	100	79.084	ENSCLAG00000012166	CPSF1	100	78.947	Chinchilla_lanigera
ENSPNYG00000004906	cpsf1	100	78.689	ENSCSAG00000008502	CPSF1	100	78.552	Chlorocebus_sabaeus
ENSPNYG00000004906	cpsf1	99	80.138	ENSCPBG00000018910	CPSF1	96	80.345	Chrysemys_picta_bellii
ENSPNYG00000004906	cpsf1	96	48.011	ENSCING00000000514	-	100	47.940	Ciona_intestinalis
ENSPNYG00000004906	cpsf1	99	48.569	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSPNYG00000004906	cpsf1	99	76.104	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSPNYG00000004906	cpsf1	100	78.742	ENSCGRG00001016344	Cpsf1	100	78.401	Cricetulus_griseus_chok1gshd
ENSPNYG00000004906	cpsf1	100	77.102	ENSCGRG00000003118	Cpsf1	100	76.760	Cricetulus_griseus_crigri
ENSPNYG00000004906	cpsf1	100	88.329	ENSCSEG00000013464	cpsf1	99	89.781	Cynoglossus_semilaevis
ENSPNYG00000004906	cpsf1	88	85.838	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSPNYG00000004906	cpsf1	100	86.342	ENSDARG00000034178	cpsf1	100	86.419	Danio_rerio
ENSPNYG00000004906	cpsf1	57	82.659	ENSDNOG00000043654	CPSF1	94	82.659	Dasypus_novemcinctus
ENSPNYG00000004906	cpsf1	99	78.237	ENSDORG00000006278	Cpsf1	99	78.698	Dipodomys_ordii
ENSPNYG00000004906	cpsf1	100	43.865	FBgn0024698	Cpsf160	100	43.968	Drosophila_melanogaster
ENSPNYG00000004906	cpsf1	81	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSPNYG00000004906	cpsf1	100	78.581	ENSEASG00005010774	CPSF1	100	78.649	Equus_asinus_asinus
ENSPNYG00000004906	cpsf1	100	78.445	ENSECAG00000022209	CPSF1	100	78.513	Equus_caballus
ENSPNYG00000004906	cpsf1	100	78.596	ENSEEUG00000000471	CPSF1	100	78.258	Erinaceus_europaeus
ENSPNYG00000004906	cpsf1	100	86.568	ENSELUG00000012271	cpsf1	100	86.239	Esox_lucius
ENSPNYG00000004906	cpsf1	100	79.152	ENSFDAG00000016060	CPSF1	100	79.016	Fukomys_damarensis
ENSPNYG00000004906	cpsf1	100	88.187	ENSFHEG00000016801	cpsf1	100	88.179	Fundulus_heteroclitus
ENSPNYG00000004906	cpsf1	100	86.270	ENSGMOG00000000796	cpsf1	100	86.284	Gadus_morhua
ENSPNYG00000004906	cpsf1	96	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSPNYG00000004906	cpsf1	100	89.218	ENSGACG00000008703	cpsf1	100	89.084	Gasterosteus_aculeatus
ENSPNYG00000004906	cpsf1	100	77.391	ENSGAGG00000004276	CPSF1	98	80.791	Gopherus_agassizii
ENSPNYG00000004906	cpsf1	100	78.332	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSPNYG00000004906	cpsf1	100	98.336	ENSHBUG00000018900	cpsf1	100	98.336	Haplochromis_burtoni
ENSPNYG00000004906	cpsf1	100	79.084	ENSHGLG00000016139	CPSF1	100	78.947	Heterocephalus_glaber_female
ENSPNYG00000004906	cpsf1	100	79.016	ENSHGLG00100009750	CPSF1	100	78.879	Heterocephalus_glaber_male
ENSPNYG00000004906	cpsf1	100	89.395	ENSHCOG00000018509	cpsf1	100	89.463	Hippocampus_comes
ENSPNYG00000004906	cpsf1	100	82.838	ENSIPUG00000011259	cpsf1	100	82.444	Ictalurus_punctatus
ENSPNYG00000004906	cpsf1	99	78.386	ENSSTOG00000009957	CPSF1	99	78.411	Ictidomys_tridecemlineatus
ENSPNYG00000004906	cpsf1	100	78.879	ENSJJAG00000023002	Cpsf1	100	78.742	Jaculus_jaculus
ENSPNYG00000004906	cpsf1	91	93.103	ENSKMAG00000001940	cpsf1	99	93.103	Kryptolebias_marmoratus
ENSPNYG00000004906	cpsf1	100	91.230	ENSLBEG00000003601	cpsf1	100	91.570	Labrus_bergylta
ENSPNYG00000004906	cpsf1	89	79.401	ENSLACG00000000233	CPSF1	92	79.281	Latimeria_chalumnae
ENSPNYG00000004906	cpsf1	100	82.221	ENSLOCG00000008484	cpsf1	100	82.629	Lepisosteus_oculatus
ENSPNYG00000004906	cpsf1	99	78.843	ENSLAFG00000022601	CPSF1	100	78.365	Loxodonta_africana
ENSPNYG00000004906	cpsf1	100	78.210	ENSMFAG00000037013	CPSF1	100	79.167	Macaca_fascicularis
ENSPNYG00000004906	cpsf1	100	78.483	ENSMMUG00000007380	CPSF1	100	79.167	Macaca_mulatta
ENSPNYG00000004906	cpsf1	99	78.677	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSPNYG00000004906	cpsf1	100	78.210	ENSMLEG00000043010	CPSF1	100	79.167	Mandrillus_leucophaeus
ENSPNYG00000004906	cpsf1	100	94.162	ENSMAMG00000003803	cpsf1	100	94.365	Mastacembelus_armatus
ENSPNYG00000004906	cpsf1	100	94.591	ENSMZEG00005001168	cpsf1	100	94.591	Maylandia_zebra
ENSPNYG00000004906	cpsf1	100	78.742	ENSMAUG00000003601	Cpsf1	100	78.537	Mesocricetus_auratus
ENSPNYG00000004906	cpsf1	100	78.537	ENSMICG00000015767	CPSF1	100	78.469	Microcebus_murinus
ENSPNYG00000004906	cpsf1	100	78.469	ENSMOCG00000022758	Cpsf1	100	78.332	Microtus_ochrogaster
ENSPNYG00000004906	cpsf1	100	91.598	ENSMMOG00000021245	cpsf1	100	91.391	Mola_mola
ENSPNYG00000004906	cpsf1	100	78.798	ENSMODG00000010755	CPSF1	100	79.068	Monodelphis_domestica
ENSPNYG00000004906	cpsf1	100	93.678	ENSMALG00000020545	cpsf1	100	93.882	Monopterus_albus
ENSPNYG00000004906	cpsf1	100	79.016	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.879	Mus_caroli
ENSPNYG00000004906	cpsf1	100	79.016	ENSMUSG00000034022	Cpsf1	100	78.879	Mus_musculus
ENSPNYG00000004906	cpsf1	100	79.084	MGP_PahariEiJ_G0019946	Cpsf1	100	78.947	Mus_pahari
ENSPNYG00000004906	cpsf1	100	79.084	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.947	Mus_spretus
ENSPNYG00000004906	cpsf1	97	78.773	ENSMPUG00000006419	CPSF1	93	78.989	Mustela_putorius_furo
ENSPNYG00000004906	cpsf1	100	78.742	ENSNGAG00000022460	Cpsf1	100	78.606	Nannospalax_galili
ENSPNYG00000004906	cpsf1	100	90.207	ENSNBRG00000000813	cpsf1	100	90.207	Neolamprologus_brichardi
ENSPNYG00000004906	cpsf1	86	69.369	ENSNLEG00000010633	-	100	79.167	Nomascus_leucogenys
ENSPNYG00000004906	cpsf1	84	86.047	ENSMEUG00000014922	CPSF1	85	86.047	Notamacropus_eugenii
ENSPNYG00000004906	cpsf1	63	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSPNYG00000004906	cpsf1	100	79.152	ENSODEG00000013995	CPSF1	100	78.808	Octodon_degus
ENSPNYG00000004906	cpsf1	100	96.578	ENSONIG00000007676	cpsf1	100	96.578	Oreochromis_niloticus
ENSPNYG00000004906	cpsf1	61	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSPNYG00000004906	cpsf1	100	90.007	ENSORLG00000013544	cpsf1	100	90.007	Oryzias_latipes
ENSPNYG00000004906	cpsf1	100	90.007	ENSORLG00020021693	cpsf1	100	90.075	Oryzias_latipes_hni
ENSPNYG00000004906	cpsf1	100	90.007	ENSORLG00015009979	cpsf1	100	90.007	Oryzias_latipes_hsok
ENSPNYG00000004906	cpsf1	100	90.551	ENSOMEG00000011849	cpsf1	100	90.551	Oryzias_melastigma
ENSPNYG00000004906	cpsf1	100	78.893	ENSOGAG00000000315	CPSF1	100	78.757	Otolemur_garnettii
ENSPNYG00000004906	cpsf1	100	78.347	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSPNYG00000004906	cpsf1	100	77.032	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSPNYG00000004906	cpsf1	100	78.347	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSPNYG00000004906	cpsf1	99	78.677	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSPNYG00000004906	cpsf1	100	86.007	ENSPKIG00000002582	cpsf1	100	86.398	Paramormyrops_kingsleyae
ENSPNYG00000004906	cpsf1	100	78.933	ENSPCIG00000009035	CPSF1	100	79.203	Phascolarctos_cinereus
ENSPNYG00000004906	cpsf1	100	89.946	ENSPFOG00000012870	cpsf1	100	90.421	Poecilia_formosa
ENSPNYG00000004906	cpsf1	100	89.952	ENSPREG00000016307	cpsf1	100	90.360	Poecilia_reticulata
ENSPNYG00000004906	cpsf1	100	71.809	ENSPPYG00000018973	CPSF1	100	71.536	Pongo_abelii
ENSPNYG00000004906	cpsf1	93	84.659	ENSPCAG00000011541	CPSF1	94	84.659	Procavia_capensis
ENSPNYG00000004906	cpsf1	100	75.308	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSPNYG00000004906	cpsf1	91	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSPNYG00000004906	cpsf1	100	82.483	ENSPNAG00000024395	cpsf1	100	82.483	Pygocentrus_nattereri
ENSPNYG00000004906	cpsf1	100	78.987	ENSRNOG00000030705	Cpsf1	100	78.850	Rattus_norvegicus
ENSPNYG00000004906	cpsf1	100	78.279	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSPNYG00000004906	cpsf1	100	78.347	ENSRROG00000044861	CPSF1	100	79.630	Rhinopithecus_roxellana
ENSPNYG00000004906	cpsf1	99	78.762	ENSSBOG00000027177	CPSF1	99	78.996	Saimiri_boliviensis_boliviensis
ENSPNYG00000004906	cpsf1	100	78.933	ENSSHAG00000006500	CPSF1	100	78.933	Sarcophilus_harrisii
ENSPNYG00000004906	cpsf1	98	86.724	ENSSFOG00015004606	cpsf1	100	86.795	Scleropages_formosus
ENSPNYG00000004906	cpsf1	100	92.198	ENSSMAG00000020547	cpsf1	100	92.809	Scophthalmus_maximus
ENSPNYG00000004906	cpsf1	100	93.223	ENSSDUG00000001100	cpsf1	100	93.084	Seriola_dumerili
ENSPNYG00000004906	cpsf1	100	93.084	ENSSLDG00000003619	cpsf1	100	93.361	Seriola_lalandi_dorsalis
ENSPNYG00000004906	cpsf1	89	75.695	ENSSARG00000003643	CPSF1	92	75.616	Sorex_araneus
ENSPNYG00000004906	cpsf1	99	80.942	ENSSPUG00000014396	CPSF1	99	81.037	Sphenodon_punctatus
ENSPNYG00000004906	cpsf1	100	94.365	ENSSPAG00000005349	cpsf1	100	94.705	Stegastes_partitus
ENSPNYG00000004906	cpsf1	100	77.422	ENSSSCG00000005906	CPSF1	100	77.490	Sus_scrofa
ENSPNYG00000004906	cpsf1	99	91.069	ENSTRUG00000013134	cpsf1	99	90.717	Takifugu_rubripes
ENSPNYG00000004906	cpsf1	100	89.091	ENSTNIG00000014027	cpsf1	100	89.091	Tetraodon_nigroviridis
ENSPNYG00000004906	cpsf1	76	75.492	ENSTBEG00000001756	CPSF1	89	75.492	Tupaia_belangeri
ENSPNYG00000004906	cpsf1	90	84.138	ENSTTRG00000001937	CPSF1	90	83.966	Tursiops_truncatus
ENSPNYG00000004906	cpsf1	99	78.984	ENSUAMG00000006476	CPSF1	98	78.647	Ursus_americanus
ENSPNYG00000004906	cpsf1	100	88.284	ENSXCOG00000003608	cpsf1	100	88.353	Xiphophorus_couchianus
ENSPNYG00000004906	cpsf1	100	87.431	ENSXMAG00000005798	cpsf1	100	87.569	Xiphophorus_maculatus