EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000008893 (Gene tree)
Gene ID: 102200406
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 13898 bases
Position: chrJH419299.1:2274690-2288587
Accession: 102200406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000011790	RRM_1	PF00076.22	4.4e-31	1	2
ENSPNYP00000011790	RRM_1	PF00076.22	4.4e-31	2	2
ENSPNYP00000011780	RRM_1	PF00076.22	6.2e-31	1	2
ENSPNYP00000011780	RRM_1	PF00076.22	6.2e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000012062	-	1497	XM_005739873	ENSPNYP00000011780	498 (aa)	XP_005739930	-
ENSPNYT00000012072	-	1428	XM_013912617	ENSPNYP00000011790	475 (aa)	XP_013768071	-

Gene Model

Click here to download ENSPNYG00000008893's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000008893's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000008893	pspc1	87	58.887	ENSG00000121390	PSPC1	99	62.935	Homo_sapiens
ENSPNYG00000008893	pspc1	100	77.186	ENSAPOG00000015946	pspc1	99	79.009	Acanthochromis_polyacanthus
ENSPNYG00000008893	pspc1	100	54.731	ENSAMEG00000017420	PSPC1	99	57.649	Ailuropoda_melanoleuca
ENSPNYG00000008893	pspc1	100	86.310	ENSACIG00000018695	pspc1	100	86.111	Amphilophus_citrinellus
ENSPNYG00000008893	pspc1	100	77.083	ENSAOCG00000005279	pspc1	100	77.714	Amphiprion_ocellaris
ENSPNYG00000008893	pspc1	100	77.524	ENSAPEG00000015927	pspc1	100	78.352	Amphiprion_percula
ENSPNYG00000008893	pspc1	100	77.132	ENSATEG00000004878	pspc1	100	76.448	Anabas_testudineus
ENSPNYG00000008893	pspc1	75	56.479	ENSAPLG00000006246	PSPC1	100	57.389	Anas_platyrhynchos
ENSPNYG00000008893	pspc1	57	66.308	ENSAPLG00000003643	SFPQ	54	66.308	Anas_platyrhynchos
ENSPNYG00000008893	pspc1	88	57.764	ENSACAG00000002093	PSPC1	99	55.046	Anolis_carolinensis
ENSPNYG00000008893	pspc1	100	56.522	ENSANAG00000000059	PSPC1	99	62.000	Aotus_nancymaae
ENSPNYG00000008893	pspc1	100	99.598	ENSACLG00000027220	pspc1	100	99.598	Astatotilapia_calliptera
ENSPNYG00000008893	pspc1	100	56.881	ENSAMXG00000036881	pspc1	100	59.815	Astyanax_mexicanus
ENSPNYG00000008893	pspc1	100	58.621	ENSBTAG00000003934	PSPC1	99	58.192	Bos_taurus
ENSPNYG00000008893	pspc1	100	55.009	ENSCJAG00000004554	PSPC1	99	57.678	Callithrix_jacchus
ENSPNYG00000008893	pspc1	87	58.887	ENSCAFG00020002009	PSPC1	98	64.232	Canis_lupus_dingo
ENSPNYG00000008893	pspc1	100	55.140	ENSCHIG00000016708	PSPC1	99	57.836	Capra_hircus
ENSPNYG00000008893	pspc1	74	61.929	ENSTSYG00000032882	PSPC1	88	62.879	Carlito_syrichta
ENSPNYG00000008893	pspc1	100	54.478	ENSCPOG00000000395	PSPC1	99	64.467	Cavia_porcellus
ENSPNYG00000008893	pspc1	100	54.244	ENSCCAG00000033498	PSPC1	99	57.274	Cebus_capucinus
ENSPNYG00000008893	pspc1	87	58.672	ENSCATG00000036434	PSPC1	90	72.000	Cercocebus_atys
ENSPNYG00000008893	pspc1	77	55.875	ENSCLAG00000005241	PSPC1	89	60.644	Chinchilla_lanigera
ENSPNYG00000008893	pspc1	100	53.860	ENSCHOG00000008913	PSPC1	99	57.064	Choloepus_hoffmanni
ENSPNYG00000008893	pspc1	89	58.316	ENSCPBG00000020859	PSPC1	88	59.698	Chrysemys_picta_bellii
ENSPNYG00000008893	pspc1	76	59.949	ENSCANG00000018948	PSPC1	89	70.632	Colobus_angolensis_palliatus
ENSPNYG00000008893	pspc1	100	53.959	ENSCGRG00001018368	Pspc1	99	57.037	Cricetulus_griseus_chok1gshd
ENSPNYG00000008893	pspc1	100	53.959	ENSCGRG00000011724	Pspc1	99	57.037	Cricetulus_griseus_crigri
ENSPNYG00000008893	pspc1	100	72.674	ENSCVAG00000007679	-	100	73.489	Cyprinodon_variegatus
ENSPNYG00000008893	pspc1	100	57.411	ENSDARG00000006621	pspc1	100	60.891	Danio_rerio
ENSPNYG00000008893	pspc1	100	54.851	ENSDNOG00000011078	PSPC1	99	57.486	Dasypus_novemcinctus
ENSPNYG00000008893	pspc1	100	52.206	ENSDORG00000016050	Pspc1	99	55.121	Dipodomys_ordii
ENSPNYG00000008893	pspc1	90	46.800	ENSEBUG00000003964	-	82	48.511	Eptatretus_burgeri
ENSPNYG00000008893	pspc1	55	45.517	ENSEBUG00000010133	pspc1	76	45.517	Eptatretus_burgeri
ENSPNYG00000008893	pspc1	100	55.347	ENSEASG00005000119	PSPC1	99	64.467	Equus_asinus_asinus
ENSPNYG00000008893	pspc1	100	55.347	ENSECAG00000017286	PSPC1	99	64.467	Equus_caballus
ENSPNYG00000008893	pspc1	68	59.202	ENSEEUG00000011288	-	61	59.327	Erinaceus_europaeus
ENSPNYG00000008893	pspc1	100	60.989	ENSELUG00000003746	pspc1	98	63.981	Esox_lucius
ENSPNYG00000008893	pspc1	100	54.851	ENSFCAG00000027841	PSPC1	98	64.232	Felis_catus
ENSPNYG00000008893	pspc1	89	58.368	ENSFALG00000008750	PSPC1	99	54.766	Ficedula_albicollis
ENSPNYG00000008893	pspc1	100	54.784	ENSFDAG00000002617	PSPC1	99	57.627	Fukomys_damarensis
ENSPNYG00000008893	pspc1	96	65.957	ENSGMOG00000015074	pspc1	84	71.131	Gadus_morhua
ENSPNYG00000008893	pspc1	87	58.887	ENSGALG00000017142	PSPC1	99	50.281	Gallus_gallus
ENSPNYG00000008893	pspc1	82	72.660	ENSGAFG00000006327	pspc1	83	74.194	Gambusia_affinis
ENSPNYG00000008893	pspc1	100	66.475	ENSGACG00000014901	pspc1	98	73.714	Gasterosteus_aculeatus
ENSPNYG00000008893	pspc1	89	58.316	ENSGAGG00000019164	PSPC1	88	59.698	Gopherus_agassizii
ENSPNYG00000008893	pspc1	87	58.887	ENSGGOG00000003414	PSPC1	99	62.935	Gorilla_gorilla
ENSPNYG00000008893	pspc1	100	89.423	ENSHBUG00000001139	pspc1	100	90.716	Haplochromis_burtoni
ENSPNYG00000008893	pspc1	100	55.019	ENSHGLG00000018811	PSPC1	99	57.836	Heterocephalus_glaber_female
ENSPNYG00000008893	pspc1	55	76.806	ENSHGLG00100007962	PSPC1	80	76.806	Heterocephalus_glaber_male
ENSPNYG00000008893	pspc1	80	69.639	ENSHCOG00000013251	pspc1	99	67.706	Hippocampus_comes
ENSPNYG00000008893	pspc1	100	61.224	ENSIPUG00000013192	pspc1	100	63.060	Ictalurus_punctatus
ENSPNYG00000008893	pspc1	100	54.044	ENSSTOG00000026833	PSPC1	99	64.646	Ictidomys_tridecemlineatus
ENSPNYG00000008893	pspc1	87	59.101	ENSJJAG00000018334	Pspc1	99	56.881	Jaculus_jaculus
ENSPNYG00000008893	pspc1	100	65.737	ENSKMAG00000013525	-	100	65.139	Kryptolebias_marmoratus
ENSPNYG00000008893	pspc1	98	75.301	ENSLBEG00000004474	pspc1	99	75.301	Labrus_bergylta
ENSPNYG00000008893	pspc1	100	53.493	ENSLACG00000010762	PSPC1	100	56.343	Latimeria_chalumnae
ENSPNYG00000008893	pspc1	100	59.363	ENSLOCG00000010832	pspc1	99	61.278	Lepisosteus_oculatus
ENSPNYG00000008893	pspc1	100	54.953	ENSLAFG00000010968	PSPC1	99	57.649	Loxodonta_africana
ENSPNYG00000008893	pspc1	87	58.672	ENSMFAG00000032728	PSPC1	93	70.783	Macaca_fascicularis
ENSPNYG00000008893	pspc1	87	58.672	ENSMMUG00000020262	PSPC1	88	71.865	Macaca_mulatta
ENSPNYG00000008893	pspc1	87	58.672	ENSMNEG00000027401	PSPC1	98	58.737	Macaca_nemestrina
ENSPNYG00000008893	pspc1	74	56.373	ENSMLEG00000039043	PSPC1	94	60.345	Mandrillus_leucophaeus
ENSPNYG00000008893	pspc1	100	76.367	ENSMAMG00000004333	pspc1	100	75.977	Mastacembelus_armatus
ENSPNYG00000008893	pspc1	100	99.598	ENSMZEG00005005726	pspc1	100	99.598	Maylandia_zebra
ENSPNYG00000008893	pspc1	76	56.448	ENSMGAG00000015134	PSPC1	100	57.353	Meleagris_gallopavo
ENSPNYG00000008893	pspc1	88	58.547	ENSMAUG00000021067	Pspc1	99	58.761	Mesocricetus_auratus
ENSPNYG00000008893	pspc1	87	60.256	ENSMICG00000013970	PSPC1	99	62.779	Microcebus_murinus
ENSPNYG00000008893	pspc1	100	53.761	ENSMOCG00000006060	Pspc1	99	57.411	Microtus_ochrogaster
ENSPNYG00000008893	pspc1	90	89.286	ENSMMOG00000004352	pspc1	75	88.889	Mola_mola
ENSPNYG00000008893	pspc1	77	61.687	ENSMODG00000008029	PSPC1	76	58.884	Monodelphis_domestica
ENSPNYG00000008893	pspc1	100	76.305	ENSMALG00000008914	pspc1	100	75.502	Monopterus_albus
ENSPNYG00000008893	pspc1	100	53.945	MGP_CAROLIEiJ_G0019341	Pspc1	99	56.042	Mus_caroli
ENSPNYG00000008893	pspc1	100	54.128	ENSMUSG00000021938	Pspc1	99	56.042	Mus_musculus
ENSPNYG00000008893	pspc1	100	53.945	MGP_PahariEiJ_G0030359	Pspc1	99	56.042	Mus_pahari
ENSPNYG00000008893	pspc1	100	54.128	MGP_SPRETEiJ_G0020232	Pspc1	99	56.042	Mus_spretus
ENSPNYG00000008893	pspc1	87	58.887	ENSMPUG00000013347	PSPC1	99	57.885	Mustela_putorius_furo
ENSPNYG00000008893	pspc1	87	58.351	ENSMLUG00000017663	PSPC1	99	56.960	Myotis_lucifugus
ENSPNYG00000008893	pspc1	100	54.044	ENSNGAG00000011271	Pspc1	99	57.196	Nannospalax_galili
ENSPNYG00000008893	pspc1	87	97.585	ENSNBRG00000014059	pspc1	99	97.585	Neolamprologus_brichardi
ENSPNYG00000008893	pspc1	87	58.887	ENSNLEG00000001294	PSPC1	100	57.380	Nomascus_leucogenys
ENSPNYG00000008893	pspc1	100	54.064	ENSODEG00000019012	-	99	54.580	Octodon_degus
ENSPNYG00000008893	pspc1	100	49.635	ENSODEG00000007817	-	99	54.563	Octodon_degus
ENSPNYG00000008893	pspc1	100	87.716	ENSONIG00000012010	pspc1	99	88.031	Oreochromis_niloticus
ENSPNYG00000008893	pspc1	74	56.296	ENSOANG00000009017	-	100	59.606	Ornithorhynchus_anatinus
ENSPNYG00000008893	pspc1	77	53.431	ENSOANG00000011381	-	82	54.094	Ornithorhynchus_anatinus
ENSPNYG00000008893	pspc1	87	59.013	ENSOCUG00000006153	PSPC1	99	56.985	Oryctolagus_cuniculus
ENSPNYG00000008893	pspc1	100	69.674	ENSORLG00000004232	-	100	70.000	Oryzias_latipes
ENSPNYG00000008893	pspc1	100	70.233	ENSORLG00020000578	PSPC1	100	70.196	Oryzias_latipes_hni
ENSPNYG00000008893	pspc1	100	70.058	ENSORLG00015017480	pspc1	100	70.392	Oryzias_latipes_hsok
ENSPNYG00000008893	pspc1	87	59.101	ENSOGAG00000012643	PSPC1	99	57.914	Otolemur_garnettii
ENSPNYG00000008893	pspc1	86	58.836	ENSOARG00000014163	PSPC1	95	61.803	Ovis_aries
ENSPNYG00000008893	pspc1	87	59.471	ENSPPAG00000009836	PSPC1	92	72.171	Pan_paniscus
ENSPNYG00000008893	pspc1	100	54.851	ENSPPRG00000008833	PSPC1	99	57.643	Panthera_pardus
ENSPNYG00000008893	pspc1	74	56.790	ENSPTIG00000016917	PSPC1	84	60.345	Panthera_tigris_altaica
ENSPNYG00000008893	pspc1	80	61.055	ENSPTRG00000005677	PSPC1	99	62.935	Pan_troglodytes
ENSPNYG00000008893	pspc1	87	58.672	ENSPANG00000001992	PSPC1	92	70.149	Papio_anubis
ENSPNYG00000008893	pspc1	100	57.741	ENSPKIG00000003578	pspc1	100	62.738	Paramormyrops_kingsleyae
ENSPNYG00000008893	pspc1	99	53.396	ENSPSIG00000005168	PSPC1	90	58.193	Pelodiscus_sinensis
ENSPNYG00000008893	pspc1	69	71.171	ENSPMGG00000015135	pspc1	92	71.171	Periophthalmus_magnuspinnatus
ENSPNYG00000008893	pspc1	100	53.591	ENSPEMG00000015214	Pspc1	99	56.852	Peromyscus_maniculatus_bairdii
ENSPNYG00000008893	pspc1	59	42.708	ENSPMAG00000004618	pspc1	88	42.708	Petromyzon_marinus
ENSPNYG00000008893	pspc1	87	58.672	ENSPCIG00000017680	PSPC1	100	57.196	Phascolarctos_cinereus
ENSPNYG00000008893	pspc1	99	71.731	ENSPFOG00000003362	pspc1	100	73.114	Poecilia_formosa
ENSPNYG00000008893	pspc1	100	71.810	ENSPLAG00000011540	pspc1	100	73.180	Poecilia_latipinna
ENSPNYG00000008893	pspc1	100	71.429	ENSPMEG00000008322	pspc1	100	72.797	Poecilia_mexicana
ENSPNYG00000008893	pspc1	100	71.048	ENSPREG00000007786	pspc1	100	72.414	Poecilia_reticulata
ENSPNYG00000008893	pspc1	87	58.458	ENSPPYG00000005186	PSPC1	99	56.801	Pongo_abelii
ENSPNYG00000008893	pspc1	59	62.048	ENSPCAG00000008314	-	54	69.136	Procavia_capensis
ENSPNYG00000008893	pspc1	87	60.606	ENSPCOG00000014364	PSPC1	99	57.276	Propithecus_coquereli
ENSPNYG00000008893	pspc1	87	59.062	ENSPVAG00000005036	PSPC1	99	57.993	Pteropus_vampyrus
ENSPNYG00000008893	pspc1	100	61.007	ENSPNAG00000016511	pspc1	100	62.639	Pygocentrus_nattereri
ENSPNYG00000008893	pspc1	100	53.591	ENSRNOG00000020782	Pspc1	99	58.071	Rattus_norvegicus
ENSPNYG00000008893	pspc1	87	58.887	ENSRBIG00000036057	PSPC1	97	67.606	Rhinopithecus_bieti
ENSPNYG00000008893	pspc1	87	58.887	ENSRROG00000036334	PSPC1	99	63.184	Rhinopithecus_roxellana
ENSPNYG00000008893	pspc1	77	57.635	ENSSBOG00000028172	PSPC1	98	64.495	Saimiri_boliviensis_boliviensis
ENSPNYG00000008893	pspc1	87	59.101	ENSSHAG00000004696	PSPC1	99	57.011	Sarcophilus_harrisii
ENSPNYG00000008893	pspc1	88	64.421	ENSSFOG00015001395	pspc1	99	67.603	Scleropages_formosus
ENSPNYG00000008893	pspc1	100	73.171	ENSSMAG00000001761	pspc1	100	73.585	Scophthalmus_maximus
ENSPNYG00000008893	pspc1	100	73.346	ENSSDUG00000010651	pspc1	100	75.601	Seriola_dumerili
ENSPNYG00000008893	pspc1	100	78.958	ENSSLDG00000004284	pspc1	100	80.762	Seriola_lalandi_dorsalis
ENSPNYG00000008893	pspc1	87	60.823	ENSSARG00000000888	PSPC1	99	57.656	Sorex_araneus
ENSPNYG00000008893	pspc1	99	54.991	ENSSPUG00000008550	PSPC1	99	56.654	Sphenodon_punctatus
ENSPNYG00000008893	pspc1	100	76.592	ENSSPAG00000001921	pspc1	100	77.024	Stegastes_partitus
ENSPNYG00000008893	pspc1	87	58.887	ENSSSCG00000009569	PSPC1	99	64.631	Sus_scrofa
ENSPNYG00000008893	pspc1	87	58.887	ENSTGUG00000011295	PSPC1	99	59.698	Taeniopygia_guttata
ENSPNYG00000008893	pspc1	100	67.823	ENSTRUG00000011335	pspc1	100	68.544	Takifugu_rubripes
ENSPNYG00000008893	pspc1	100	64.474	ENSTNIG00000010358	pspc1	100	66.602	Tetraodon_nigroviridis
ENSPNYG00000008893	pspc1	87	49.683	ENSTBEG00000002361	PSPC1	99	47.523	Tupaia_belangeri
ENSPNYG00000008893	pspc1	100	54.972	ENSTTRG00000003343	PSPC1	99	57.678	Tursiops_truncatus
ENSPNYG00000008893	pspc1	69	66.269	ENSUAMG00000012309	PSPC1	92	66.269	Ursus_americanus
ENSPNYG00000008893	pspc1	87	58.672	ENSUMAG00000013993	PSPC1	91	71.692	Ursus_maritimus
ENSPNYG00000008893	pspc1	74	56.543	ENSVPAG00000010029	PSPC1	100	60.099	Vicugna_pacos
ENSPNYG00000008893	pspc1	87	58.887	ENSVVUG00000006414	PSPC1	99	64.250	Vulpes_vulpes
ENSPNYG00000008893	pspc1	82	73.892	ENSXCOG00000017438	pspc1	95	75.434	Xiphophorus_couchianus
ENSPNYG00000008893	pspc1	82	74.138	ENSXMAG00000007929	pspc1	95	75.682	Xiphophorus_maculatus