EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPNYG00000009552 (Gene tree)
Gene ID
-
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Pundamilia_nyererei
Status
putative
Strand
Minus strand
Length
3480 bases
Position
chrJH419217.1:951955-955434
Accession
102199227
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNYP00000012583LSMPF01423.227e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNYT00000012889-420XM_005724372ENSPNYP00000012583139 (aa)XP_005724429-
Gene Model
Click here to download ENSPNYG00000009552's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000009552's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPNYG00000009552lsm35434.667ENSPNYG00000022236lsm58534.667
ENSPNYG00000009552lsm35732.927ENSPNYG00000011826snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNYG00000009552lsm37395.098ENSG00000170860LSM310095.098Homo_sapiens
ENSPNYG00000009552lsm373100.000ENSAPOG00000018947lsm3100100.000Acanthochromis_polyacanthus
ENSPNYG00000009552lsm37395.098ENSAMEG00000009405LSM310095.098Ailuropoda_melanoleuca
ENSPNYG00000009552lsm39685.821ENSACIG00000004574lsm39385.821Amphilophus_citrinellus
ENSPNYG00000009552lsm373100.000ENSAOCG00000007658lsm3100100.000Amphiprion_ocellaris
ENSPNYG00000009552lsm373100.000ENSAPEG00000018621lsm3100100.000Amphiprion_percula
ENSPNYG00000009552lsm373100.000ENSATEG00000005153lsm3100100.000Anabas_testudineus
ENSPNYG00000009552lsm36896.842ENSAPLG00000014499LSM310096.842Anas_platyrhynchos
ENSPNYG00000009552lsm37396.078ENSACAG00000013503LSM310096.078Anolis_carolinensis
ENSPNYG00000009552lsm37391.176ENSANAG00000002903-10091.176Aotus_nancymaae
ENSPNYG00000009552lsm37395.098ENSANAG00000034627LSM310095.098Aotus_nancymaae
ENSPNYG00000009552lsm370100.000ENSACLG00000001726-94100.000Astatotilapia_calliptera
ENSPNYG00000009552lsm37398.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSPNYG00000009552lsm36996.875ENSBTAG00000007363LSM310096.875Bos_taurus
ENSPNYG00000009552lsm37369.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSPNYG00000009552lsm37393.137ENSCAFG00000001760LSM310093.137Canis_familiaris
ENSPNYG00000009552lsm37393.137ENSCAFG00020021584-10093.137Canis_lupus_dingo
ENSPNYG00000009552lsm37386.275ENSCAFG00020016680-10086.275Canis_lupus_dingo
ENSPNYG00000009552lsm37385.047ENSCAFG00020020950-10085.047Canis_lupus_dingo
ENSPNYG00000009552lsm37393.137ENSCAFG00020017266-10093.137Canis_lupus_dingo
ENSPNYG00000009552lsm37392.157ENSCAFG00020026452-10092.157Canis_lupus_dingo
ENSPNYG00000009552lsm37395.098ENSCHIG00000024650LSM310095.098Capra_hircus
ENSPNYG00000009552lsm37377.228ENSTSYG00000028528-9977.228Carlito_syrichta
ENSPNYG00000009552lsm37396.078ENSTSYG00000005204-10096.078Carlito_syrichta
ENSPNYG00000009552lsm36996.875ENSCAPG00000015760LSM310096.875Cavia_aperea
ENSPNYG00000009552lsm37395.098ENSCPOG00000034071LSM310095.098Cavia_porcellus
ENSPNYG00000009552lsm37375.490ENSCCAG00000032763-10075.490Cebus_capucinus
ENSPNYG00000009552lsm37395.098ENSCCAG00000036499-10095.098Cebus_capucinus
ENSPNYG00000009552lsm37395.098ENSCCAG00000019503-10095.098Cebus_capucinus
ENSPNYG00000009552lsm37395.098ENSCATG00000039421LSM310095.098Cercocebus_atys
ENSPNYG00000009552lsm37375.248ENSCATG00000031630-9975.248Cercocebus_atys
ENSPNYG00000009552lsm37395.098ENSCLAG00000015997LSM310095.098Chinchilla_lanigera
ENSPNYG00000009552lsm37390.196ENSCSAG00000019525-10090.196Chlorocebus_sabaeus
ENSPNYG00000009552lsm37396.078ENSCPBG00000014531LSM310096.078Chrysemys_picta_bellii
ENSPNYG00000009552lsm37380.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSPNYG00000009552lsm37392.157ENSCANG00000038037-10092.157Colobus_angolensis_palliatus
ENSPNYG00000009552lsm37393.137ENSCANG00000018782-10093.137Colobus_angolensis_palliatus
ENSPNYG00000009552lsm37395.098ENSCANG00000033944-10095.098Colobus_angolensis_palliatus
ENSPNYG00000009552lsm37371.845ENSCGRG00001008639-10071.845Cricetulus_griseus_chok1gshd
ENSPNYG00000009552lsm37280.000ENSCGRG00001011396-10080.000Cricetulus_griseus_chok1gshd
ENSPNYG00000009552lsm37395.098ENSCGRG00001017598Lsm310095.098Cricetulus_griseus_chok1gshd
ENSPNYG00000009552lsm37395.098ENSCGRG00000016159Lsm310095.098Cricetulus_griseus_crigri
ENSPNYG00000009552lsm36882.105ENSCGRG00000012129-10082.105Cricetulus_griseus_crigri
ENSPNYG00000009552lsm37897.273ENSCSEG00000015071lsm38397.273Cynoglossus_semilaevis
ENSPNYG00000009552lsm37399.020ENSCVAG00000006933lsm310099.020Cyprinodon_variegatus
ENSPNYG00000009552lsm37396.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSPNYG00000009552lsm37395.098ENSDNOG00000030808LSM310095.098Dasypus_novemcinctus
ENSPNYG00000009552lsm37375.490ENSDORG00000024490-10075.490Dipodomys_ordii
ENSPNYG00000009552lsm37395.098ENSDORG00000006894-10095.098Dipodomys_ordii
ENSPNYG00000009552lsm37378.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSPNYG00000009552lsm37395.098ENSETEG00000016207LSM310095.098Echinops_telfairi
ENSPNYG00000009552lsm37388.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSPNYG00000009552lsm37395.098ENSEASG00005015443LSM310095.098Equus_asinus_asinus
ENSPNYG00000009552lsm37395.098ENSECAG00000007803LSM310095.098Equus_caballus
ENSPNYG00000009552lsm37398.039ENSELUG00000018922lsm310098.039Esox_lucius
ENSPNYG00000009552lsm37372.549ENSFCAG00000044344-10072.549Felis_catus
ENSPNYG00000009552lsm37395.098ENSFCAG00000038453LSM310095.098Felis_catus
ENSPNYG00000009552lsm37396.078ENSFALG00000012644LSM310096.078Ficedula_albicollis
ENSPNYG00000009552lsm37395.098ENSFDAG00000011470LSM310095.098Fukomys_damarensis
ENSPNYG00000009552lsm373100.000ENSFHEG00000000876lsm3100100.000Fundulus_heteroclitus
ENSPNYG00000009552lsm36897.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSPNYG00000009552lsm373100.000ENSGAFG00000013965lsm3100100.000Gambusia_affinis
ENSPNYG00000009552lsm373100.000ENSGACG00000003488lsm3100100.000Gasterosteus_aculeatus
ENSPNYG00000009552lsm37396.078ENSGAGG00000025707LSM310096.078Gopherus_agassizii
ENSPNYG00000009552lsm37395.098ENSGGOG00000010006LSM310095.098Gorilla_gorilla
ENSPNYG00000009552lsm373100.000ENSHBUG00000022399lsm3100100.000Haplochromis_burtoni
ENSPNYG00000009552lsm37375.490ENSHGLG00000015564-10075.490Heterocephalus_glaber_female
ENSPNYG00000009552lsm37395.098ENSHGLG00000000651LSM310095.098Heterocephalus_glaber_female
ENSPNYG00000009552lsm37395.098ENSHGLG00100011343LSM310095.098Heterocephalus_glaber_male
ENSPNYG00000009552lsm37375.490ENSHGLG00100010658-10075.490Heterocephalus_glaber_male
ENSPNYG00000009552lsm37399.020ENSHCOG00000013481lsm310099.020Hippocampus_comes
ENSPNYG00000009552lsm37398.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSPNYG00000009552lsm37395.098ENSSTOG00000006842LSM310095.098Ictidomys_tridecemlineatus
ENSPNYG00000009552lsm37395.098ENSJJAG00000017351Lsm310095.098Jaculus_jaculus
ENSPNYG00000009552lsm37372.549ENSJJAG00000018311-10072.549Jaculus_jaculus
ENSPNYG00000009552lsm37387.255ENSJJAG00000012797-10087.255Jaculus_jaculus
ENSPNYG00000009552lsm37399.020ENSKMAG00000015182lsm310099.020Kryptolebias_marmoratus
ENSPNYG00000009552lsm37197.959ENSLBEG00000021292lsm310097.959Labrus_bergylta
ENSPNYG00000009552lsm37396.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSPNYG00000009552lsm37394.175ENSLAFG00000023308LSM310094.175Loxodonta_africana
ENSPNYG00000009552lsm37395.098ENSMFAG00000003185LSM310095.098Macaca_fascicularis
ENSPNYG00000009552lsm37395.098ENSMMUG00000023126LSM310095.098Macaca_mulatta
ENSPNYG00000009552lsm37175.510ENSMMUG00000002294-9575.510Macaca_mulatta
ENSPNYG00000009552lsm37372.549ENSMMUG00000043596-10072.549Macaca_mulatta
ENSPNYG00000009552lsm37395.098ENSMNEG00000043632LSM310095.098Macaca_nemestrina
ENSPNYG00000009552lsm37377.228ENSMNEG00000037686-9977.228Macaca_nemestrina
ENSPNYG00000009552lsm37395.098ENSMLEG00000036162LSM310095.098Mandrillus_leucophaeus
ENSPNYG00000009552lsm373100.000ENSMAMG00000012807lsm3100100.000Mastacembelus_armatus
ENSPNYG00000009552lsm310099.281ENSMZEG00005016682lsm310099.281Maylandia_zebra
ENSPNYG00000009552lsm36996.875ENSMGAG00000007776LSM310096.875Meleagris_gallopavo
ENSPNYG00000009552lsm37394.118ENSMICG00000032361-10094.118Microcebus_murinus
ENSPNYG00000009552lsm37381.373ENSMICG00000027821-10081.373Microcebus_murinus
ENSPNYG00000009552lsm37395.098ENSMOCG00000014269Lsm310095.098Microtus_ochrogaster
ENSPNYG00000009552lsm37399.020ENSMMOG00000020715lsm310099.020Mola_mola
ENSPNYG00000009552lsm37394.118ENSMODG00000007275LSM310094.118Monodelphis_domestica
ENSPNYG00000009552lsm373100.000ENSMALG00000006485lsm3100100.000Monopterus_albus
ENSPNYG00000009552lsm37395.098ENSMUSG00000034192Lsm310095.098Mus_musculus
ENSPNYG00000009552lsm37395.098MGP_PahariEiJ_G0022402Lsm310095.098Mus_pahari
ENSPNYG00000009552lsm37395.098MGP_SPRETEiJ_G0029681Lsm310095.098Mus_spretus
ENSPNYG00000009552lsm37183.838ENSMPUG00000019120-9783.838Mustela_putorius_furo
ENSPNYG00000009552lsm36187.059ENSMPUG00000017256-10087.059Mustela_putorius_furo
ENSPNYG00000009552lsm37390.196ENSMLUG00000024700-10090.196Myotis_lucifugus
ENSPNYG00000009552lsm37395.098ENSMLUG00000010677LSM310095.098Myotis_lucifugus
ENSPNYG00000009552lsm37377.228ENSNGAG00000010207-9977.228Nannospalax_galili
ENSPNYG00000009552lsm37370.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSPNYG00000009552lsm37395.098ENSNGAG00000022450Lsm310095.098Nannospalax_galili
ENSPNYG00000009552lsm373100.000ENSNBRG00000014318lsm3100100.000Neolamprologus_brichardi
ENSPNYG00000009552lsm37386.275ENSNLEG00000030229-10086.275Nomascus_leucogenys
ENSPNYG00000009552lsm37395.098ENSNLEG00000005079LSM310095.098Nomascus_leucogenys
ENSPNYG00000009552lsm37395.098ENSODEG00000001726LSM310095.098Octodon_degus
ENSPNYG00000009552lsm37388.235ENSODEG00000019403-10088.235Octodon_degus
ENSPNYG00000009552lsm37394.118ENSODEG00000019740-10094.118Octodon_degus
ENSPNYG00000009552lsm37393.137ENSODEG00000019158-10093.137Octodon_degus
ENSPNYG00000009552lsm373100.000ENSONIG00000000370lsm3100100.000Oreochromis_niloticus
ENSPNYG00000009552lsm373100.000ENSONIG00000021369-100100.000Oreochromis_niloticus
ENSPNYG00000009552lsm37394.118ENSOANG00000012273LSM310094.118Ornithorhynchus_anatinus
ENSPNYG00000009552lsm37395.098ENSOCUG00000027653-10095.098Oryctolagus_cuniculus
ENSPNYG00000009552lsm37391.176ENSOCUG00000011088-10091.176Oryctolagus_cuniculus
ENSPNYG00000009552lsm37398.039ENSORLG00000025900lsm310098.039Oryzias_latipes
ENSPNYG00000009552lsm37398.039ENSORLG00020007125lsm310098.039Oryzias_latipes_hni
ENSPNYG00000009552lsm37398.039ENSORLG00015002944lsm310098.039Oryzias_latipes_hsok
ENSPNYG00000009552lsm37398.039ENSOMEG00000001915lsm310098.039Oryzias_melastigma
ENSPNYG00000009552lsm37395.098ENSOGAG00000007659-10095.098Otolemur_garnettii
ENSPNYG00000009552lsm37094.845ENSOGAG00000028858-9994.845Otolemur_garnettii
ENSPNYG00000009552lsm37386.275ENSOGAG00000033051-10086.275Otolemur_garnettii
ENSPNYG00000009552lsm37394.175ENSOARG00000000600LSM310094.175Ovis_aries
ENSPNYG00000009552lsm37395.098ENSPPAG00000034074LSM310095.098Pan_paniscus
ENSPNYG00000009552lsm37394.118ENSPPRG00000020953-10094.118Panthera_pardus
ENSPNYG00000009552lsm37388.119ENSPPRG00000010610-8988.119Panthera_pardus
ENSPNYG00000009552lsm37395.098ENSPPRG00000012912-10095.098Panthera_pardus
ENSPNYG00000009552lsm37395.098ENSPTIG00000013072-10095.098Panthera_tigris_altaica
ENSPNYG00000009552lsm37395.098ENSPTIG00000003463-10095.098Panthera_tigris_altaica
ENSPNYG00000009552lsm37395.098ENSPTRG00000014650LSM310095.098Pan_troglodytes
ENSPNYG00000009552lsm37395.098ENSPANG00000009378LSM310095.098Papio_anubis
ENSPNYG00000009552lsm37373.529ENSPANG00000032192-10073.529Papio_anubis
ENSPNYG00000009552lsm37496.117ENSPKIG00000008037lsm39296.117Paramormyrops_kingsleyae
ENSPNYG00000009552lsm37396.078ENSPSIG00000015720LSM310096.078Pelodiscus_sinensis
ENSPNYG00000009552lsm37095.876ENSPMGG00000012103lsm39895.876Periophthalmus_magnuspinnatus
ENSPNYG00000009552lsm37379.412ENSPEMG00000020213-10079.412Peromyscus_maniculatus_bairdii
ENSPNYG00000009552lsm37395.098ENSPEMG00000015797Lsm310095.098Peromyscus_maniculatus_bairdii
ENSPNYG00000009552lsm373100.000ENSPFOG00000008372lsm3100100.000Poecilia_formosa
ENSPNYG00000009552lsm373100.000ENSPLAG00000000563lsm3100100.000Poecilia_latipinna
ENSPNYG00000009552lsm373100.000ENSPMEG00000022052lsm3100100.000Poecilia_mexicana
ENSPNYG00000009552lsm373100.000ENSPREG00000022485lsm3100100.000Poecilia_reticulata
ENSPNYG00000009552lsm37395.098ENSPPYG00000013402LSM310095.098Pongo_abelii
ENSPNYG00000009552lsm37395.098ENSPCAG00000017077LSM310095.098Procavia_capensis
ENSPNYG00000009552lsm37394.118ENSPCOG00000016217-10094.118Propithecus_coquereli
ENSPNYG00000009552lsm36973.958ENSPCOG00000014435-9873.958Propithecus_coquereli
ENSPNYG00000009552lsm37395.098ENSPVAG00000016795LSM310095.098Pteropus_vampyrus
ENSPNYG00000009552lsm37398.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSPNYG00000009552lsm37395.098ENSRNOG00000008733Lsm310095.098Rattus_norvegicus
ENSPNYG00000009552lsm37395.098ENSRBIG00000034399LSM310095.098Rhinopithecus_bieti
ENSPNYG00000009552lsm37379.412ENSRBIG00000043783-10079.412Rhinopithecus_bieti
ENSPNYG00000009552lsm37376.471ENSRROG00000044056-10076.471Rhinopithecus_roxellana
ENSPNYG00000009552lsm37395.098ENSRROG00000033276-10095.098Rhinopithecus_roxellana
ENSPNYG00000009552lsm37384.314ENSRROG00000044047-10084.314Rhinopithecus_roxellana
ENSPNYG00000009552lsm37380.392ENSRROG00000039868-10080.392Rhinopithecus_roxellana
ENSPNYG00000009552lsm37395.098ENSSBOG00000024310LSM310095.098Saimiri_boliviensis_boliviensis
ENSPNYG00000009552lsm37398.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSPNYG00000009552lsm373100.000ENSSMAG00000001818lsm3100100.000Scophthalmus_maximus
ENSPNYG00000009552lsm373100.000ENSSDUG00000006040lsm3100100.000Seriola_dumerili
ENSPNYG00000009552lsm373100.000ENSSLDG00000006399lsm3100100.000Seriola_lalandi_dorsalis
ENSPNYG00000009552lsm37386.275ENSSPUG00000005394LSM310086.275Sphenodon_punctatus
ENSPNYG00000009552lsm36896.842ENSSPUG00000017047-9996.842Sphenodon_punctatus
ENSPNYG00000009552lsm37387.255ENSSPAG00000000934lsm310087.255Stegastes_partitus
ENSPNYG00000009552lsm37072.165ENSSSCG00000023718-9972.165Sus_scrofa
ENSPNYG00000009552lsm37395.098ENSSSCG00000011601LSM310095.098Sus_scrofa
ENSPNYG00000009552lsm37396.078ENSTGUG00000008327LSM310096.078Taeniopygia_guttata
ENSPNYG00000009552lsm37399.020ENSTRUG00000023175lsm310099.020Takifugu_rubripes
ENSPNYG00000009552lsm37399.020ENSTNIG00000005589lsm310099.020Tetraodon_nigroviridis
ENSPNYG00000009552lsm37385.294ENSTBEG00000001050-9985.294Tupaia_belangeri
ENSPNYG00000009552lsm37395.098ENSTTRG00000011197LSM310095.098Tursiops_truncatus
ENSPNYG00000009552lsm37395.098ENSUAMG00000017250-10095.098Ursus_americanus
ENSPNYG00000009552lsm37395.098ENSUMAG00000015905LSM310095.098Ursus_maritimus
ENSPNYG00000009552lsm36896.842ENSVPAG00000010709LSM310096.842Vicugna_pacos
ENSPNYG00000009552lsm37389.216ENSVVUG00000005684-10089.216Vulpes_vulpes
ENSPNYG00000009552lsm37391.176ENSVVUG00000007332-9191.176Vulpes_vulpes
ENSPNYG00000009552lsm37386.275ENSVVUG00000024228-10086.275Vulpes_vulpes
ENSPNYG00000009552lsm37390.196ENSVVUG00000006481-10090.196Vulpes_vulpes
ENSPNYG00000009552lsm37391.176ENSVVUG00000029294-10091.176Vulpes_vulpes
ENSPNYG00000009552lsm37395.098ENSXETG00000011534lsm310095.098Xenopus_tropicalis
ENSPNYG00000009552lsm373100.000ENSXCOG00000017432LSM3100100.000Xiphophorus_couchianus
ENSPNYG00000009552lsm373100.000ENSXMAG00000009151lsm3100100.000Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us