EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSPNYG00000009846 (Gene tree)
Gene ID
102206621
Gene Symbol
upf3b
Alias
zgc:174674|zgc:66390
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Pundamilia_nyererei
Status
putative
Strand
Minus strand
Length
4313 bases
Position
chrJH419213.1:2417353-2421665
Accession
102206621
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPNYP00000012980Smg4_UPF3PF03467.158.4e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPNYT00000013300-2969XM_005722902ENSPNYP00000012980457 (aa)XP_005722959UPI0003AF3289
Gene Model
Click here to download ENSPNYG00000009846's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000009846's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPNYG00000009846upf3b6465.798ENSG00000125351UPF3B9666.507Homo_sapiens
ENSPNYG00000009846upf3b10085.558ENSAPOG00000012775upf3b10085.558Acanthochromis_polyacanthus
ENSPNYG00000009846upf3b9250.231ENSAMEG00000004259UPF3A5052.766Ailuropoda_melanoleuca
ENSPNYG00000009846upf3b9658.170ENSAMEG00000000163UPF3B9657.205Ailuropoda_melanoleuca
ENSPNYG00000009846upf3b10083.153ENSACIG00000013582upf3b10084.665Amphilophus_citrinellus
ENSPNYG00000009846upf3b10084.026ENSAOCG00000000706upf3b10084.026Amphiprion_ocellaris
ENSPNYG00000009846upf3b10085.120ENSAPEG00000005545upf3b10085.120Amphiprion_percula
ENSPNYG00000009846upf3b10083.369ENSATEG00000018742upf3b10084.233Anabas_testudineus
ENSPNYG00000009846upf3b9958.686ENSACAG00000003625UPF3B10056.900Anolis_carolinensis
ENSPNYG00000009846upf3b8951.691ENSACAG00000001540UPF3A9644.282Anolis_carolinensis
ENSPNYG00000009846upf3b9658.134ENSANAG00000021894-9766.507Aotus_nancymaae
ENSPNYG00000009846upf3b9654.664ENSANAG00000025598-9850.964Aotus_nancymaae
ENSPNYG00000009846upf3b10099.346ENSACLG00000001649upf3b10099.346Astatotilapia_calliptera
ENSPNYG00000009846upf3b6782.239ENSAMXG00000000199upf3b9882.239Astyanax_mexicanus
ENSPNYG00000009846upf3b5668.015ENSBTAG00000035615UPF3B8867.279Bos_taurus
ENSPNYG00000009846upf3b9657.516ENSCJAG00000004975UPF3B9766.029Callithrix_jacchus
ENSPNYG00000009846upf3b9657.298ENSCAFG00000018426UPF3B9857.205Canis_familiaris
ENSPNYG00000009846upf3b9545.000ENSCAFG00000006504UPF3A8641.505Canis_familiaris
ENSPNYG00000009846upf3b9345.266ENSCAFG00020014268UPF3A8441.505Canis_lupus_dingo
ENSPNYG00000009846upf3b9655.120ENSCAFG00020004074UPF3B9655.022Canis_lupus_dingo
ENSPNYG00000009846upf3b9240.855ENSCHIG00000011454-5048.069Capra_hircus
ENSPNYG00000009846upf3b9656.751ENSCHIG00000018011-8866.912Capra_hircus
ENSPNYG00000009846upf3b9656.962ENSCHIG00000000247-9655.839Capra_hircus
ENSPNYG00000009846upf3b9657.050ENSTSYG00000014690UPF3B9661.395Carlito_syrichta
ENSPNYG00000009846upf3b5650.391ENSCCAG00000021964-8250.391Cebus_capucinus
ENSPNYG00000009846upf3b9339.374ENSCCAG00000029813-6953.695Cebus_capucinus
ENSPNYG00000009846upf3b6465.798ENSCATG00000017506UPF3B9766.507Cercocebus_atys
ENSPNYG00000009846upf3b6466.450ENSCLAG00000003260UPF3B9657.860Chinchilla_lanigera
ENSPNYG00000009846upf3b6463.125ENSCSAG00000018348UPF3B9655.202Chlorocebus_sabaeus
ENSPNYG00000009846upf3b9460.181ENSCPBG00000020685UPF3B9459.729Chrysemys_picta_bellii
ENSPNYG00000009846upf3b5667.647ENSCANG00000029220UPF3B8567.279Colobus_angolensis_palliatus
ENSPNYG00000009846upf3b6956.325ENSCGRG00001013643-9154.277Cricetulus_griseus_chok1gshd
ENSPNYG00000009846upf3b9454.646ENSCGRG00001006858-9453.880Cricetulus_griseus_chok1gshd
ENSPNYG00000009846upf3b8657.895ENSCGRG00000007627Upf3b9357.035Cricetulus_griseus_crigri
ENSPNYG00000009846upf3b9974.530ENSCSEG00000002046upf3b9973.950Cynoglossus_semilaevis
ENSPNYG00000009846upf3b10080.131ENSCVAG00000005030upf3b10080.131Cyprinodon_variegatus
ENSPNYG00000009846upf3b9472.477ENSDARG00000000489upf3b9968.817Danio_rerio
ENSPNYG00000009846upf3b9249.655ENSDARG00000069297upf3a8445.098Danio_rerio
ENSPNYG00000009846upf3b9656.568ENSDNOG00000008665UPF3B9655.839Dasypus_novemcinctus
ENSPNYG00000009846upf3b7750.700ENSDNOG00000034391UPF3A5153.648Dasypus_novemcinctus
ENSPNYG00000009846upf3b9657.516ENSDORG00000006077Upf3b9457.366Dipodomys_ordii
ENSPNYG00000009846upf3b9656.863ENSEASG00005012919UPF3B9656.114Equus_asinus_asinus
ENSPNYG00000009846upf3b9656.863ENSECAG00000016947UPF3B9656.114Equus_caballus
ENSPNYG00000009846upf3b8851.319ENSELUG00000011050upf3a8341.844Esox_lucius
ENSPNYG00000009846upf3b9967.562ENSELUG00000020389upf3b10070.103Esox_lucius
ENSPNYG00000009846upf3b9658.568ENSFCAG00000004388UPF3B9458.259Felis_catus
ENSPNYG00000009846upf3b9148.821ENSFCAG00000014602UPF3A8342.619Felis_catus
ENSPNYG00000009846upf3b9756.823ENSFALG00000001569UPF3B9455.789Ficedula_albicollis
ENSPNYG00000009846upf3b9657.952ENSFDAG00000018869UPF3B9656.987Fukomys_damarensis
ENSPNYG00000009846upf3b10080.870ENSFHEG00000017895upf3b10080.870Fundulus_heteroclitus
ENSPNYG00000009846upf3b10067.230ENSGMOG00000001621upf3b10066.879Gadus_morhua
ENSPNYG00000009846upf3b9956.846ENSGALG00000008618UPF3B10056.846Gallus_gallus
ENSPNYG00000009846upf3b10079.039ENSGAFG00000000829upf3b10079.258Gambusia_affinis
ENSPNYG00000009846upf3b10077.419ENSGACG00000017435upf3b9489.062Gasterosteus_aculeatus
ENSPNYG00000009846upf3b9464.560ENSGAGG00000001219UPF3B9463.348Gopherus_agassizii
ENSPNYG00000009846upf3b6465.798ENSGGOG00000023995UPF3B9656.769Gorilla_gorilla
ENSPNYG00000009846upf3b10098.911ENSHBUG00000017393upf3b10098.911Haplochromis_burtoni
ENSPNYG00000009846upf3b9657.734ENSHGLG00000019582-9656.550Heterocephalus_glaber_female
ENSPNYG00000009846upf3b6957.485ENSHGLG00000011189-7855.060Heterocephalus_glaber_female
ENSPNYG00000009846upf3b9655.556ENSHGLG00100002042-9653.712Heterocephalus_glaber_male
ENSPNYG00000009846upf3b6957.485ENSHGLG00100001889-5567.532Heterocephalus_glaber_male
ENSPNYG00000009846upf3b10072.591ENSHCOG00000017004upf3b10072.436Hippocampus_comes
ENSPNYG00000009846upf3b9970.779ENSIPUG00000019249upf3b9970.779Ictalurus_punctatus
ENSPNYG00000009846upf3b9543.197ENSIPUG00000023450upf3a8344.337Ictalurus_punctatus
ENSPNYG00000009846upf3b9657.952ENSSTOG00000001101UPF3B9656.987Ictidomys_tridecemlineatus
ENSPNYG00000009846upf3b9456.347ENSJJAG00000000053Upf3b9455.134Jaculus_jaculus
ENSPNYG00000009846upf3b10084.245ENSKMAG00000020300upf3b10084.245Kryptolebias_marmoratus
ENSPNYG00000009846upf3b6187.004ENSLBEG00000028689upf3b5987.313Labrus_bergylta
ENSPNYG00000009846upf3b9761.488ENSLACG00000008691UPF3B9859.275Latimeria_chalumnae
ENSPNYG00000009846upf3b9964.114ENSLOCG00000015238upf3b9967.102Lepisosteus_oculatus
ENSPNYG00000009846upf3b9254.186ENSLOCG00000002665upf3a8746.763Lepisosteus_oculatus
ENSPNYG00000009846upf3b9657.419ENSLAFG00000001267UPF3B9656.681Loxodonta_africana
ENSPNYG00000009846upf3b6465.472ENSMFAG00000045414UPF3B9766.507Macaca_fascicularis
ENSPNYG00000009846upf3b8745.522ENSMMUG00000007449UPF3A5054.585Macaca_mulatta
ENSPNYG00000009846upf3b6465.472ENSMMUG00000020222UPF3B9766.507Macaca_mulatta
ENSPNYG00000009846upf3b6465.472ENSMNEG00000039794UPF3B9766.507Macaca_nemestrina
ENSPNYG00000009846upf3b8746.269ENSMLEG00000014726UPF3A5354.348Mandrillus_leucophaeus
ENSPNYG00000009846upf3b6465.798ENSMLEG00000010999UPF3B9766.507Mandrillus_leucophaeus
ENSPNYG00000009846upf3b10099.129ENSMZEG00005007871upf3b10099.129Maylandia_zebra
ENSPNYG00000009846upf3b8550.746ENSMGAG00000014837UPF3A9541.191Meleagris_gallopavo
ENSPNYG00000009846upf3b8458.056ENSMGAG00000007728UPF3B9958.056Meleagris_gallopavo
ENSPNYG00000009846upf3b9453.452ENSMAUG00000008705Upf3b9453.125Mesocricetus_auratus
ENSPNYG00000009846upf3b5667.883ENSMICG00000001743UPF3B8567.279Microcebus_murinus
ENSPNYG00000009846upf3b9453.896ENSMOCG00000017893Upf3b9455.076Microtus_ochrogaster
ENSPNYG00000009846upf3b10079.521ENSMMOG00000004183upf3b10079.956Mola_mola
ENSPNYG00000009846upf3b8761.750ENSMODG00000010232UPF3B9360.859Monodelphis_domestica
ENSPNYG00000009846upf3b9253.364ENSMODG00000003159UPF3A9542.488Monodelphis_domestica
ENSPNYG00000009846upf3b10082.151ENSMALG00000008042upf3b10082.366Monopterus_albus
ENSPNYG00000009846upf3b9454.788MGP_CAROLIEiJ_G0032999Upf3b9454.018Mus_caroli
ENSPNYG00000009846upf3b9455.011ENSMUSG00000036572Upf3b9454.241Mus_musculus
ENSPNYG00000009846upf3b9455.234MGP_PahariEiJ_G0031543Upf3b9454.464Mus_pahari
ENSPNYG00000009846upf3b9455.011MGP_SPRETEiJ_G0034152Upf3b9454.241Mus_spretus
ENSPNYG00000009846upf3b9657.484ENSMPUG00000001531UPF3B9856.987Mustela_putorius_furo
ENSPNYG00000009846upf3b8746.305ENSMLUG00000015905UPF3A5453.617Myotis_lucifugus
ENSPNYG00000009846upf3b9658.134ENSMLUG00000010821UPF3B9457.812Myotis_lucifugus
ENSPNYG00000009846upf3b9455.679ENSNGAG00000008231Upf3b9454.464Nannospalax_galili
ENSPNYG00000009846upf3b9256.872ENSNLEG00000014897UPF3B8659.169Nomascus_leucogenys
ENSPNYG00000009846upf3b9656.739ENSODEG00000002186-9655.799Octodon_degus
ENSPNYG00000009846upf3b10093.966ENSONIG00000002536upf3b10095.043Oreochromis_niloticus
ENSPNYG00000009846upf3b8245.220ENSOANG00000006985-5544.348Ornithorhynchus_anatinus
ENSPNYG00000009846upf3b9755.882ENSOCUG00000010213UPF3B9655.414Oryctolagus_cuniculus
ENSPNYG00000009846upf3b10078.775ENSORLG00000001026upf3b10078.775Oryzias_latipes
ENSPNYG00000009846upf3b9249.661ENSORLG00020014317upf3a8950.342Oryzias_latipes_hni
ENSPNYG00000009846upf3b10078.337ENSORLG00020003758upf3b10078.337Oryzias_latipes_hni
ENSPNYG00000009846upf3b10078.337ENSORLG00015012954upf3b10078.337Oryzias_latipes_hsok
ENSPNYG00000009846upf3b10079.212ENSOMEG00000014736upf3b10079.212Oryzias_melastigma
ENSPNYG00000009846upf3b9747.732ENSOMEG00000014425upf3a8245.185Oryzias_melastigma
ENSPNYG00000009846upf3b9656.087ENSOGAG00000033003-9855.652Otolemur_garnettii
ENSPNYG00000009846upf3b6465.798ENSOGAG00000004643-9657.424Otolemur_garnettii
ENSPNYG00000009846upf3b9045.631ENSOARG00000007869-5551.282Ovis_aries
ENSPNYG00000009846upf3b9656.604ENSOARG00000016051-9655.485Ovis_aries
ENSPNYG00000009846upf3b6465.798ENSPPAG00000040390UPF3B9656.769Pan_paniscus
ENSPNYG00000009846upf3b9148.821ENSPPRG00000025062UPF3A8342.619Panthera_pardus
ENSPNYG00000009846upf3b9658.568ENSPPRG00000023536UPF3B9458.259Panthera_pardus
ENSPNYG00000009846upf3b9655.556ENSPTIG00000015264UPF3B8566.912Panthera_tigris_altaica
ENSPNYG00000009846upf3b6465.798ENSPTRG00000022228UPF3B9656.769Pan_troglodytes
ENSPNYG00000009846upf3b6465.798ENSPANG00000000900UPF3B9766.507Papio_anubis
ENSPNYG00000009846upf3b9048.230ENSPKIG00000004422upf3a8640.191Paramormyrops_kingsleyae
ENSPNYG00000009846upf3b9967.896ENSPKIG00000019226upf3b9283.803Paramormyrops_kingsleyae
ENSPNYG00000009846upf3b5765.399ENSPSIG00000005833UPF3B8866.129Pelodiscus_sinensis
ENSPNYG00000009846upf3b9250.585ENSPSIG00000007468UPF3A9743.602Pelodiscus_sinensis
ENSPNYG00000009846upf3b5688.281ENSPMGG00000016067upf3b9586.973Periophthalmus_magnuspinnatus
ENSPNYG00000009846upf3b9455.111ENSPEMG00000012352Upf3b9454.120Peromyscus_maniculatus_bairdii
ENSPNYG00000009846upf3b8959.024ENSPCIG00000028914UPF3B8358.081Phascolarctos_cinereus
ENSPNYG00000009846upf3b7753.812ENSPCIG00000019590-6467.808Phascolarctos_cinereus
ENSPNYG00000009846upf3b9349.658ENSPLAG00000011960upf3a8351.691Poecilia_latipinna
ENSPNYG00000009846upf3b10079.913ENSPLAG00000019922upf3b10080.131Poecilia_latipinna
ENSPNYG00000009846upf3b10079.913ENSPLAG00000005105upf3b10080.131Poecilia_latipinna
ENSPNYG00000009846upf3b6071.053ENSPMEG00000000836upf3a8343.823Poecilia_mexicana
ENSPNYG00000009846upf3b10079.913ENSPMEG00000023532upf3b10080.131Poecilia_mexicana
ENSPNYG00000009846upf3b5667.399ENSPPYG00000020675-8267.033Pongo_abelii
ENSPNYG00000009846upf3b9655.508ENSPCAG00000009464UPF3B9655.202Procavia_capensis
ENSPNYG00000009846upf3b9658.351ENSPCOG00000021960UPF3B9458.036Propithecus_coquereli
ENSPNYG00000009846upf3b9647.890ENSPVAG00000014075UPF3B9646.709Pteropus_vampyrus
ENSPNYG00000009846upf3b9643.261ENSPNAG00000019532upf3a8744.860Pygocentrus_nattereri
ENSPNYG00000009846upf3b9973.276ENSPNAG00000021528upf3b9986.047Pygocentrus_nattereri
ENSPNYG00000009846upf3b9455.011ENSRNOG00000039994Upf3b9454.241Rattus_norvegicus
ENSPNYG00000009846upf3b8746.766ENSRBIG00000034007UPF3A5254.585Rhinopithecus_bieti
ENSPNYG00000009846upf3b8152.394ENSRBIG00000037219UPF3B9557.527Rhinopithecus_bieti
ENSPNYG00000009846upf3b6465.798ENSRROG00000041031UPF3B9766.507Rhinopithecus_roxellana
ENSPNYG00000009846upf3b9657.734ENSSBOG00000019740UPF3B9965.072Saimiri_boliviensis_boliviensis
ENSPNYG00000009846upf3b9856.367ENSSHAG00000008634UPF3B9955.556Sarcophilus_harrisii
ENSPNYG00000009846upf3b9351.972ENSSHAG00000009895UPF3A9743.458Sarcophilus_harrisii
ENSPNYG00000009846upf3b9970.153ENSSFOG00015005614upf3b9969.584Scleropages_formosus
ENSPNYG00000009846upf3b10079.399ENSSMAG00000012913upf3b10090.234Scophthalmus_maximus
ENSPNYG00000009846upf3b9143.198ENSSDUG00000009680upf3a5575.281Seriola_dumerili
ENSPNYG00000009846upf3b10085.466ENSSDUG00000005682upf3b10086.985Seriola_dumerili
ENSPNYG00000009846upf3b10086.551ENSSLDG00000003130upf3b10086.768Seriola_lalandi_dorsalis
ENSPNYG00000009846upf3b8656.158ENSSARG00000004147UPF3B9358.780Sorex_araneus
ENSPNYG00000009846upf3b9956.557ENSSPUG00000013082UPF3B10055.556Sphenodon_punctatus
ENSPNYG00000009846upf3b10087.527ENSSPAG00000009989upf3b10087.527Stegastes_partitus
ENSPNYG00000009846upf3b8845.122ENSSSCG00000024679UPF3A5553.648Sus_scrofa
ENSPNYG00000009846upf3b9757.419ENSSSCG00000012617UPF3B9656.332Sus_scrofa
ENSPNYG00000009846upf3b8755.172ENSTGUG00000009493UPF3A9844.975Taeniopygia_guttata
ENSPNYG00000009846upf3b9062.892ENSTGUG00000003413UPF3B9660.964Taeniopygia_guttata
ENSPNYG00000009846upf3b9051.914ENSTRUG00000012730upf3a8350.980Takifugu_rubripes
ENSPNYG00000009846upf3b10079.303ENSTRUG00000010645upf3b10079.303Takifugu_rubripes
ENSPNYG00000009846upf3b10068.182ENSTNIG00000015763upf3b10065.152Tetraodon_nigroviridis
ENSPNYG00000009846upf3b9448.590ENSTBEG00000003229UPF3B9447.722Tupaia_belangeri
ENSPNYG00000009846upf3b9655.991ENSUAMG00000024565UPF3B9654.803Ursus_americanus
ENSPNYG00000009846upf3b8957.178ENSUMAG00000002150UPF3B8755.012Ursus_maritimus
ENSPNYG00000009846upf3b8457.789ENSVPAG00000009971UPF3B9556.927Vicugna_pacos
ENSPNYG00000009846upf3b8744.039ENSVPAG00000003525UPF3A5654.585Vicugna_pacos
ENSPNYG00000009846upf3b9654.902ENSVVUG00000011594UPF3B9766.507Vulpes_vulpes
ENSPNYG00000009846upf3b9144.056ENSVVUG00000013538UPF3A8140.049Vulpes_vulpes
ENSPNYG00000009846upf3b9455.227ENSXETG00000007440upf3b8474.742Xenopus_tropicalis
ENSPNYG00000009846upf3b8746.229ENSXETG00000002572upf3a8945.050Xenopus_tropicalis
ENSPNYG00000009846upf3b10072.489ENSXCOG00000016586upf3b9789.744Xiphophorus_couchianus
ENSPNYG00000009846upf3b10079.039ENSXMAG00000013680upf3b10079.258Xiphophorus_maculatus

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