EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000010570 (Gene tree)
Gene ID: 102198256
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 21436 bases
Position: chrJH419282.1:731589-753024
Accession: 102198256
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000014233	XRN_N	PF03159.18	4.9e-96	1	1
ENSPNYP00000014199	XRN_N	PF03159.18	5.1e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000014590	-	4971	-	ENSPNYP00000014233	1656 (aa)	-	-
ENSPNYT00000014555	-	5076	XM_005737555	ENSPNYP00000014199	1691 (aa)	XP_005737612	-

Gene Model

Click here to download ENSPNYG00000010570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000010570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000010570	xrn1	99	60.517	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSPNYG00000010570	xrn1	99	83.313	ENSAPOG00000000622	xrn1	100	83.193	Acanthochromis_polyacanthus
ENSPNYG00000010570	xrn1	93	71.113	ENSAMEG00000012538	XRN1	94	71.271	Ailuropoda_melanoleuca
ENSPNYG00000010570	xrn1	96	92.822	ENSACIG00000001057	xrn1	100	90.118	Amphilophus_citrinellus
ENSPNYG00000010570	xrn1	99	83.732	ENSAOCG00000014097	xrn1	100	83.790	Amphiprion_ocellaris
ENSPNYG00000010570	xrn1	99	84.128	ENSAPEG00000006620	xrn1	99	86.367	Amphiprion_percula
ENSPNYG00000010570	xrn1	97	85.400	ENSATEG00000009752	xrn1	99	85.557	Anabas_testudineus
ENSPNYG00000010570	xrn1	97	71.061	ENSAPLG00000004905	XRN1	94	71.004	Anas_platyrhynchos
ENSPNYG00000010570	xrn1	99	69.838	ENSACAG00000004985	XRN1	94	69.861	Anolis_carolinensis
ENSPNYG00000010570	xrn1	99	61.191	ENSANAG00000029013	XRN1	99	73.550	Aotus_nancymaae
ENSPNYG00000010570	xrn1	100	96.835	ENSACLG00000004806	xrn1	100	96.835	Astatotilapia_calliptera
ENSPNYG00000010570	xrn1	99	68.256	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSPNYG00000010570	xrn1	99	60.532	ENSBTAG00000011524	XRN1	100	60.319	Bos_taurus
ENSPNYG00000010570	xrn1	72	38.186	WBGene00012730	xrn-1	80	37.986	Caenorhabditis_elegans
ENSPNYG00000010570	xrn1	99	60.819	ENSCJAG00000001872	XRN1	100	60.797	Callithrix_jacchus
ENSPNYG00000010570	xrn1	94	72.231	ENSCAFG00000007783	XRN1	94	72.152	Canis_familiaris
ENSPNYG00000010570	xrn1	94	72.231	ENSCAFG00020009120	XRN1	99	75.629	Canis_lupus_dingo
ENSPNYG00000010570	xrn1	98	71.203	ENSCHIG00000019192	XRN1	94	71.203	Capra_hircus
ENSPNYG00000010570	xrn1	99	61.124	ENSTSYG00000002705	XRN1	100	60.915	Carlito_syrichta
ENSPNYG00000010570	xrn1	57	61.551	ENSCAPG00000004604	-	99	61.589	Cavia_aperea
ENSPNYG00000010570	xrn1	99	60.935	ENSCCAG00000034800	XRN1	99	77.338	Cebus_capucinus
ENSPNYG00000010570	xrn1	94	71.259	ENSCATG00000041794	XRN1	96	71.203	Cercocebus_atys
ENSPNYG00000010570	xrn1	99	71.361	ENSCLAG00000001451	XRN1	99	77.179	Chinchilla_lanigera
ENSPNYG00000010570	xrn1	94	71.338	ENSCSAG00000011265	XRN1	96	71.282	Chlorocebus_sabaeus
ENSPNYG00000010570	xrn1	53	93.506	ENSCHOG00000013961	-	52	93.506	Choloepus_hoffmanni
ENSPNYG00000010570	xrn1	71	51.098	ENSCSAVG00000008584	-	93	51.693	Ciona_savignyi
ENSPNYG00000010570	xrn1	95	62.902	ENSCANG00000037495	XRN1	99	77.338	Colobus_angolensis_palliatus
ENSPNYG00000010570	xrn1	94	70.741	ENSCGRG00001019411	Xrn1	99	77.179	Cricetulus_griseus_chok1gshd
ENSPNYG00000010570	xrn1	94	70.741	ENSCGRG00000012464	Xrn1	99	77.179	Cricetulus_griseus_crigri
ENSPNYG00000010570	xrn1	99	70.775	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSPNYG00000010570	xrn1	68	85.752	ENSCVAG00000013089	xrn1	99	85.841	Cyprinodon_variegatus
ENSPNYG00000010570	xrn1	99	70.886	ENSDARG00000091652	xrn1	98	81.857	Danio_rerio
ENSPNYG00000010570	xrn1	97	61.338	ENSDORG00000013833	Xrn1	100	60.573	Dipodomys_ordii
ENSPNYG00000010570	xrn1	76	39.147	FBgn0020261	pcm	77	39.226	Drosophila_melanogaster
ENSPNYG00000010570	xrn1	86	70.270	ENSETEG00000003978	XRN1	88	70.248	Echinops_telfairi
ENSPNYG00000010570	xrn1	93	71.180	ENSEASG00005002687	XRN1	99	77.690	Equus_asinus_asinus
ENSPNYG00000010570	xrn1	95	62.523	ENSECAG00000008301	XRN1	100	60.528	Equus_caballus
ENSPNYG00000010570	xrn1	92	65.141	ENSEEUG00000011323	XRN1	85	65.175	Erinaceus_europaeus
ENSPNYG00000010570	xrn1	99	70.970	ENSELUG00000000169	xrn1	100	71.256	Esox_lucius
ENSPNYG00000010570	xrn1	95	59.842	ENSFCAG00000027589	XRN1	99	79.348	Felis_catus
ENSPNYG00000010570	xrn1	99	70.373	ENSFALG00000007021	XRN1	94	71.085	Ficedula_albicollis
ENSPNYG00000010570	xrn1	98	70.491	ENSFDAG00000020494	XRN1	99	77.179	Fukomys_damarensis
ENSPNYG00000010570	xrn1	91	75.082	ENSGMOG00000006396	xrn1	88	74.692	Gadus_morhua
ENSPNYG00000010570	xrn1	99	70.820	ENSGALG00000002706	XRN1	94	70.820	Gallus_gallus
ENSPNYG00000010570	xrn1	99	85.410	ENSGACG00000014328	xrn1	100	76.827	Gasterosteus_aculeatus
ENSPNYG00000010570	xrn1	92	70.653	ENSGAGG00000017535	XRN1	93	70.889	Gopherus_agassizii
ENSPNYG00000010570	xrn1	99	60.772	ENSGGOG00000008047	XRN1	100	60.706	Gorilla_gorilla
ENSPNYG00000010570	xrn1	100	97.045	ENSHBUG00000005908	xrn1	100	97.045	Haplochromis_burtoni
ENSPNYG00000010570	xrn1	98	71.021	ENSHGLG00000014476	XRN1	99	77.179	Heterocephalus_glaber_female
ENSPNYG00000010570	xrn1	98	71.021	ENSHGLG00100015130	XRN1	99	77.179	Heterocephalus_glaber_male
ENSPNYG00000010570	xrn1	95	82.925	ENSHCOG00000014062	xrn1	99	82.925	Hippocampus_comes
ENSPNYG00000010570	xrn1	99	68.728	ENSIPUG00000015229	xrn1	100	68.750	Ictalurus_punctatus
ENSPNYG00000010570	xrn1	94	71.576	ENSSTOG00000013552	XRN1	99	77.021	Ictidomys_tridecemlineatus
ENSPNYG00000010570	xrn1	97	70.769	ENSJJAG00000010863	Xrn1	99	76.568	Jaculus_jaculus
ENSPNYG00000010570	xrn1	99	77.123	ENSKMAG00000021356	xrn1	95	85.263	Kryptolebias_marmoratus
ENSPNYG00000010570	xrn1	99	78.400	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSPNYG00000010570	xrn1	99	71.046	ENSLACG00000009020	XRN1	94	71.046	Latimeria_chalumnae
ENSPNYG00000010570	xrn1	99	74.402	ENSLOCG00000007944	xrn1	95	74.251	Lepisosteus_oculatus
ENSPNYG00000010570	xrn1	63	73.471	ENSLAFG00000015426	XRN1	99	73.346	Loxodonta_africana
ENSPNYG00000010570	xrn1	94	71.338	ENSMFAG00000032599	XRN1	96	71.282	Macaca_fascicularis
ENSPNYG00000010570	xrn1	94	71.338	ENSMMUG00000014038	XRN1	96	71.282	Macaca_mulatta
ENSPNYG00000010570	xrn1	94	71.101	ENSMNEG00000034217	XRN1	96	71.203	Macaca_nemestrina
ENSPNYG00000010570	xrn1	95	87.500	ENSMAMG00000013219	xrn1	92	88.535	Mastacembelus_armatus
ENSPNYG00000010570	xrn1	100	96.659	ENSMZEG00005015099	xrn1	100	96.659	Maylandia_zebra
ENSPNYG00000010570	xrn1	97	69.952	ENSMGAG00000006333	XRN1	94	69.952	Meleagris_gallopavo
ENSPNYG00000010570	xrn1	99	60.887	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSPNYG00000010570	xrn1	58	77.251	ENSMOCG00000008665	Xrn1	99	77.338	Microtus_ochrogaster
ENSPNYG00000010570	xrn1	99	59.596	ENSMODG00000021236	XRN1	100	59.675	Monodelphis_domestica
ENSPNYG00000010570	xrn1	99	77.640	ENSMALG00000004098	xrn1	100	77.935	Monopterus_albus
ENSPNYG00000010570	xrn1	94	76.972	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSPNYG00000010570	xrn1	98	71.201	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSPNYG00000010570	xrn1	98	70.929	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSPNYG00000010570	xrn1	98	71.168	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSPNYG00000010570	xrn1	95	63.136	ENSMPUG00000012040	XRN1	100	61.424	Mustela_putorius_furo
ENSPNYG00000010570	xrn1	98	71.021	ENSMLUG00000016885	XRN1	94	71.101	Myotis_lucifugus
ENSPNYG00000010570	xrn1	57	72.655	ENSNGAG00000023964	Xrn1	99	73.609	Nannospalax_galili
ENSPNYG00000010570	xrn1	95	62.682	ENSNLEG00000004726	XRN1	100	60.751	Nomascus_leucogenys
ENSPNYG00000010570	xrn1	66	95.876	ENSMEUG00000014473	-	66	96.117	Notamacropus_eugenii
ENSPNYG00000010570	xrn1	73	67.153	ENSOPRG00000007337	-	73	67.153	Ochotona_princeps
ENSPNYG00000010570	xrn1	99	92.202	ENSONIG00000016673	xrn1	99	94.548	Oreochromis_niloticus
ENSPNYG00000010570	xrn1	91	68.458	ENSOANG00000006735	XRN1	93	68.486	Ornithorhynchus_anatinus
ENSPNYG00000010570	xrn1	99	71.632	ENSOCUG00000001861	XRN1	94	71.632	Oryctolagus_cuniculus
ENSPNYG00000010570	xrn1	100	80.666	ENSORLG00000013005	xrn1	98	80.666	Oryzias_latipes
ENSPNYG00000010570	xrn1	99	80.538	ENSORLG00020005559	xrn1	100	80.538	Oryzias_latipes_hni
ENSPNYG00000010570	xrn1	99	80.292	ENSORLG00015022523	xrn1	100	80.292	Oryzias_latipes_hsok
ENSPNYG00000010570	xrn1	98	84.827	ENSOMEG00000015397	xrn1	99	87.305	Oryzias_melastigma
ENSPNYG00000010570	xrn1	97	59.917	ENSOGAG00000000170	XRN1	100	59.255	Otolemur_garnettii
ENSPNYG00000010570	xrn1	98	71.123	ENSOARG00000006343	XRN1	96	71.123	Ovis_aries
ENSPNYG00000010570	xrn1	99	60.970	ENSPPAG00000010180	XRN1	100	60.585	Pan_paniscus
ENSPNYG00000010570	xrn1	96	62.725	ENSPPRG00000007125	XRN1	100	61.538	Panthera_pardus
ENSPNYG00000010570	xrn1	95	63.337	ENSPTIG00000021081	XRN1	100	61.538	Panthera_tigris_altaica
ENSPNYG00000010570	xrn1	99	60.970	ENSPTRG00000015482	XRN1	100	60.585	Pan_troglodytes
ENSPNYG00000010570	xrn1	99	71.338	ENSPANG00000010638	XRN1	96	71.282	Papio_anubis
ENSPNYG00000010570	xrn1	99	69.907	ENSPSIG00000018050	XRN1	94	70.690	Pelodiscus_sinensis
ENSPNYG00000010570	xrn1	58	85.799	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSPNYG00000010570	xrn1	58	77.848	ENSPEMG00000020610	Xrn1	99	77.496	Peromyscus_maniculatus_bairdii
ENSPNYG00000010570	xrn1	66	51.094	ENSPMAG00000002975	xrn1	99	51.094	Petromyzon_marinus
ENSPNYG00000010570	xrn1	99	69.673	ENSPCIG00000028735	XRN1	99	77.778	Phascolarctos_cinereus
ENSPNYG00000010570	xrn1	90	82.976	ENSPFOG00000013932	xrn1	99	83.106	Poecilia_formosa
ENSPNYG00000010570	xrn1	90	83.453	ENSPLAG00000021653	xrn1	99	83.453	Poecilia_latipinna
ENSPNYG00000010570	xrn1	88	83.478	ENSPMEG00000003076	xrn1	95	83.678	Poecilia_mexicana
ENSPNYG00000010570	xrn1	99	81.086	ENSPREG00000021147	xrn1	100	81.399	Poecilia_reticulata
ENSPNYG00000010570	xrn1	99	60.516	ENSPPYG00000014172	XRN1	100	60.241	Pongo_abelii
ENSPNYG00000010570	xrn1	85	66.532	ENSPCAG00000005638	XRN1	91	66.532	Procavia_capensis
ENSPNYG00000010570	xrn1	97	62.201	ENSPCOG00000013089	XRN1	99	77.021	Propithecus_coquereli
ENSPNYG00000010570	xrn1	88	70.345	ENSPVAG00000016265	XRN1	86	84.393	Pteropus_vampyrus
ENSPNYG00000010570	xrn1	99	69.159	ENSPNAG00000023531	xrn1	100	69.217	Pygocentrus_nattereri
ENSPNYG00000010570	xrn1	98	71.032	ENSRNOG00000042951	Xrn1	94	70.794	Rattus_norvegicus
ENSPNYG00000010570	xrn1	94	71.259	ENSRBIG00000041227	XRN1	96	71.203	Rhinopithecus_bieti
ENSPNYG00000010570	xrn1	72	33.102	YGL173C	XRN1	74	53.261	Saccharomyces_cerevisiae
ENSPNYG00000010570	xrn1	99	60.867	ENSSBOG00000029561	XRN1	100	60.992	Saimiri_boliviensis_boliviensis
ENSPNYG00000010570	xrn1	98	64.960	ENSSHAG00000016207	XRN1	95	68.721	Sarcophilus_harrisii
ENSPNYG00000010570	xrn1	99	66.452	ENSSFOG00015024211	xrn1	100	66.667	Scleropages_formosus
ENSPNYG00000010570	xrn1	99	82.183	ENSSMAG00000016534	xrn1	100	83.675	Scophthalmus_maximus
ENSPNYG00000010570	xrn1	93	89.060	ENSSDUG00000010306	xrn1	97	90.887	Seriola_dumerili
ENSPNYG00000010570	xrn1	96	88.447	ENSSLDG00000021543	xrn1	100	88.447	Seriola_lalandi_dorsalis
ENSPNYG00000010570	xrn1	62	66.735	ENSSARG00000007741	-	75	67.181	Sorex_araneus
ENSPNYG00000010570	xrn1	99	71.611	ENSTGUG00000008498	XRN1	94	71.508	Taeniopygia_guttata
ENSPNYG00000010570	xrn1	99	73.425	ENSTRUG00000004895	xrn1	96	85.867	Takifugu_rubripes
ENSPNYG00000010570	xrn1	99	80.266	ENSTNIG00000017615	xrn1	97	80.392	Tetraodon_nigroviridis
ENSPNYG00000010570	xrn1	80	83.871	ENSTBEG00000003256	XRN1	88	71.246	Tupaia_belangeri
ENSPNYG00000010570	xrn1	99	57.119	ENSTTRG00000012914	XRN1	100	56.891	Tursiops_truncatus
ENSPNYG00000010570	xrn1	93	69.778	ENSUAMG00000001608	XRN1	99	74.092	Ursus_americanus
ENSPNYG00000010570	xrn1	93	71.440	ENSUMAG00000013625	XRN1	94	71.598	Ursus_maritimus
ENSPNYG00000010570	xrn1	95	60.133	ENSVPAG00000004690	XRN1	100	58.786	Vicugna_pacos
ENSPNYG00000010570	xrn1	93	72.073	ENSVVUG00000024461	XRN1	99	78.041	Vulpes_vulpes
ENSPNYG00000010570	xrn1	99	60.504	ENSXETG00000000619	xrn1	99	84.514	Xenopus_tropicalis
ENSPNYG00000010570	xrn1	99	78.478	ENSXCOG00000007917	xrn1	100	78.478	Xiphophorus_couchianus
ENSPNYG00000010570	xrn1	95	84.683	ENSXMAG00000018320	xrn1	99	84.844	Xiphophorus_maculatus