EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000011272 (Gene tree)
Gene ID: 102199371
Gene Symbol: -
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 5254 bases
Position: chrJH419254.1:3525121-3530374
Accession: 102199371
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000014866	RRM_1	PF00076.22	9.7e-32	1	2
ENSPNYP00000014866	RRM_1	PF00076.22	9.7e-32	2	2
ENSPNYP00000014875	RRM_1	PF00076.22	4.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000015257	-	2713	-	ENSPNYP00000014875	257 (aa)	-	-
ENSPNYT00000015246	-	1098	XM_005733039	ENSPNYP00000014866	365 (aa)	XP_005733096	-

Gene Model

Click here to download ENSPNYG00000011272's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000011272's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000011272	-	51	85.405	ENSPNYG00000004944	-	57	86.339
ENSPNYG00000011272	-	51	75.676	ENSPNYG00000003796	srsf4	55	76.503
ENSPNYG00000011272	-	50	39.378	ENSPNYG00000008644	srsf9	66	40.678
ENSPNYG00000011272	-	50	63.441	ENSPNYG00000021245	srsf5a	63	63.102
ENSPNYG00000011272	-	55	42.180	ENSPNYG00000020651	-	65	45.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000011272	-	51	87.634	ENSG00000124193	SRSF6	58	93.590	Homo_sapiens
ENSPNYG00000011272	-	76	68.231	ENSACIG00000020091	-	95	82.946	Amphilophus_citrinellus
ENSPNYG00000011272	-	88	82.663	ENSACIG00000023658	-	79	95.000	Amphilophus_citrinellus
ENSPNYG00000011272	-	86	69.716	ENSAOCG00000004309	-	56	86.885	Amphiprion_ocellaris
ENSPNYG00000011272	-	52	82.143	ENSAPEG00000020746	-	64	82.979	Amphiprion_percula
ENSPNYG00000011272	-	51	97.297	ENSAPEG00000013086	-	53	97.268	Amphiprion_percula
ENSPNYG00000011272	-	50	84.783	ENSATEG00000007255	-	70	81.967	Anabas_testudineus
ENSPNYG00000011272	-	51	88.108	ENSACAG00000002061	SRSF6	51	88.525	Anolis_carolinensis
ENSPNYG00000011272	-	51	87.634	ENSANAG00000024080	SRSF6	58	93.590	Aotus_nancymaae
ENSPNYG00000011272	-	85	52.055	ENSAMXG00000042692	-	96	88.148	Astyanax_mexicanus
ENSPNYG00000011272	-	51	87.634	ENSBTAG00000008527	SRSF6	58	94.872	Bos_taurus
ENSPNYG00000011272	-	51	87.634	ENSCJAG00000048403	SRSF6	67	88.525	Callithrix_jacchus
ENSPNYG00000011272	-	51	87.634	ENSCAFG00000009289	SRSF6	58	94.872	Canis_familiaris
ENSPNYG00000011272	-	51	87.634	ENSCAFG00020013559	SRSF6	58	94.872	Canis_lupus_dingo
ENSPNYG00000011272	-	51	87.634	ENSCHIG00000015890	-	58	94.872	Capra_hircus
ENSPNYG00000011272	-	51	82.258	ENSCPOG00000011761	SRSF6	58	93.590	Cavia_porcellus
ENSPNYG00000011272	-	51	87.634	ENSCCAG00000026018	-	58	93.590	Cebus_capucinus
ENSPNYG00000011272	-	51	76.471	ENSCCAG00000018540	-	60	76.630	Cebus_capucinus
ENSPNYG00000011272	-	51	87.634	ENSCATG00000030794	SRSF6	58	93.590	Cercocebus_atys
ENSPNYG00000011272	-	51	87.634	ENSCLAG00000010247	SRSF6	58	93.590	Chinchilla_lanigera
ENSPNYG00000011272	-	51	87.634	ENSCSAG00000014022	SRSF6	53	88.525	Chlorocebus_sabaeus
ENSPNYG00000011272	-	51	86.559	ENSCANG00000037774	-	53	87.432	Colobus_angolensis_palliatus
ENSPNYG00000011272	-	51	87.634	ENSCGRG00001022339	Srsf6	58	93.590	Cricetulus_griseus_chok1gshd
ENSPNYG00000011272	-	51	88.235	ENSDARG00000016783	srsf6b	82	96.154	Danio_rerio
ENSPNYG00000011272	-	51	87.634	ENSDNOG00000008410	SRSF6	52	88.525	Dasypus_novemcinctus
ENSPNYG00000011272	-	51	87.634	ENSDORG00000028378	Srsf6	58	93.590	Dipodomys_ordii
ENSPNYG00000011272	-	51	83.871	ENSETEG00000006221	SRSF6	52	84.699	Echinops_telfairi
ENSPNYG00000011272	-	51	87.634	ENSEASG00005023429	SRSF6	53	88.525	Equus_asinus_asinus
ENSPNYG00000011272	-	51	87.634	ENSECAG00000023932	SRSF6	56	88.525	Equus_caballus
ENSPNYG00000011272	-	50	88.525	ENSELUG00000013506	SRSF6	92	78.165	Esox_lucius
ENSPNYG00000011272	-	83	68.421	ENSELUG00000024182	SRSF6	90	86.992	Esox_lucius
ENSPNYG00000011272	-	96	76.901	ENSFHEG00000023065	srsf6a	86	93.989	Fundulus_heteroclitus
ENSPNYG00000011272	-	79	83.871	ENSGMOG00000014458	srsf6a	86	62.536	Gadus_morhua
ENSPNYG00000011272	-	51	87.701	ENSGALG00000000990	SRSF6	98	59.441	Gallus_gallus
ENSPNYG00000011272	-	89	73.088	ENSGACG00000006084	srsf6a	63	87.978	Gasterosteus_aculeatus
ENSPNYG00000011272	-	51	87.634	ENSGGOG00000009808	SRSF6	58	93.590	Gorilla_gorilla
ENSPNYG00000011272	-	51	85.405	ENSHBUG00000006386	-	57	86.339	Haplochromis_burtoni
ENSPNYG00000011272	-	51	87.634	ENSHGLG00000007348	SRSF6	58	93.590	Heterocephalus_glaber_female
ENSPNYG00000011272	-	53	68.718	ENSHGLG00000007701	-	56	67.760	Heterocephalus_glaber_female
ENSPNYG00000011272	-	82	55.450	ENSHCOG00000002740	srsf6a	56	85.792	Hippocampus_comes
ENSPNYG00000011272	-	51	87.097	ENSIPUG00000004776	-	90	65.257	Ictalurus_punctatus
ENSPNYG00000011272	-	51	87.634	ENSSTOG00000010866	SRSF6	58	93.590	Ictidomys_tridecemlineatus
ENSPNYG00000011272	-	90	73.089	ENSKMAG00000011934	srsf6a	97	83.824	Kryptolebias_marmoratus
ENSPNYG00000011272	-	87	69.375	ENSLACG00000005466	SRSF6	54	88.525	Latimeria_chalumnae
ENSPNYG00000011272	-	51	87.634	ENSMFAG00000036925	SRSF6	58	93.590	Macaca_fascicularis
ENSPNYG00000011272	-	51	87.634	ENSMMUG00000006742	SRSF6	58	93.590	Macaca_mulatta
ENSPNYG00000011272	-	51	87.097	ENSMNEG00000038270	-	53	87.978	Macaca_nemestrina
ENSPNYG00000011272	-	51	87.097	ENSMNEG00000027392	-	58	92.308	Macaca_nemestrina
ENSPNYG00000011272	-	89	91.411	ENSMAMG00000017161	srsf6a	93	91.411	Mastacembelus_armatus
ENSPNYG00000011272	-	94	64.327	ENSMZEG00005008032	-	56	86.339	Maylandia_zebra
ENSPNYG00000011272	-	50	87.978	ENSMZEG00005020658	-	60	87.978	Maylandia_zebra
ENSPNYG00000011272	-	51	87.097	ENSMICG00000008537	SRSF6	58	93.590	Microcebus_murinus
ENSPNYG00000011272	-	51	86.559	ENSMODG00000003107	SRSF6	53	88.525	Monodelphis_domestica
ENSPNYG00000011272	-	95	71.574	ENSMALG00000003702	srsf6a	99	71.574	Monopterus_albus
ENSPNYG00000011272	-	51	87.634	MGP_CAROLIEiJ_G0024606	Srsf6	58	93.590	Mus_caroli
ENSPNYG00000011272	-	51	87.634	ENSMUSG00000016921	Srsf6	58	93.590	Mus_musculus
ENSPNYG00000011272	-	51	87.634	MGP_PahariEiJ_G0026050	Srsf6	58	93.590	Mus_pahari
ENSPNYG00000011272	-	51	87.634	MGP_SPRETEiJ_G0025528	Srsf6	58	93.590	Mus_spretus
ENSPNYG00000011272	-	51	87.634	ENSMPUG00000017692	SRSF6	63	88.525	Mustela_putorius_furo
ENSPNYG00000011272	-	51	59.155	ENSMLUG00000016618	SRSF6	52	58.095	Myotis_lucifugus
ENSPNYG00000011272	-	51	87.634	ENSNGAG00000017560	Srsf6	58	93.590	Nannospalax_galili
ENSPNYG00000011272	-	91	68.373	ENSNBRG00000014709	-	57	86.339	Neolamprologus_brichardi
ENSPNYG00000011272	-	100	94.521	ENSNBRG00000001846	-	100	94.521	Neolamprologus_brichardi
ENSPNYG00000011272	-	51	87.634	ENSNLEG00000006524	SRSF6	58	93.590	Nomascus_leucogenys
ENSPNYG00000011272	-	51	86.559	ENSMEUG00000014615	SRSF6	60	88.525	Notamacropus_eugenii
ENSPNYG00000011272	-	51	85.405	ENSONIG00000020247	-	52	85.792	Oreochromis_niloticus
ENSPNYG00000011272	-	100	94.038	ENSONIG00000001925	-	100	94.038	Oreochromis_niloticus
ENSPNYG00000011272	-	51	69.231	ENSOCUG00000009785	-	62	68.947	Oryctolagus_cuniculus
ENSPNYG00000011272	-	50	52.747	ENSOCUG00000023999	-	70	53.333	Oryctolagus_cuniculus
ENSPNYG00000011272	-	85	67.431	ENSORLG00000003530	srsf6a	92	66.055	Oryzias_latipes
ENSPNYG00000011272	-	85	67.431	ENSORLG00015009410	srsf6a	92	66.055	Oryzias_latipes_hsok
ENSPNYG00000011272	-	51	87.097	ENSOGAG00000014468	SRSF6	52	87.978	Otolemur_garnettii
ENSPNYG00000011272	-	51	87.097	ENSPPAG00000034327	-	52	87.978	Pan_paniscus
ENSPNYG00000011272	-	51	72.581	ENSPPAG00000043131	-	56	72.727	Pan_paniscus
ENSPNYG00000011272	-	51	87.634	ENSPTRG00000044686	-	58	93.590	Pan_troglodytes
ENSPNYG00000011272	-	51	72.581	ENSPTRG00000046274	-	56	72.727	Pan_troglodytes
ENSPNYG00000011272	-	51	87.634	ENSPANG00000035224	SRSF6	58	93.590	Papio_anubis
ENSPNYG00000011272	-	90	79.498	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSPNYG00000011272	-	53	73.913	ENSPKIG00000015703	-	95	60.265	Paramormyrops_kingsleyae
ENSPNYG00000011272	-	90	77.982	ENSPMGG00000014963	srsf6a	65	97.814	Periophthalmus_magnuspinnatus
ENSPNYG00000011272	-	51	86.559	ENSPCIG00000003820	SRSF6	58	93.590	Phascolarctos_cinereus
ENSPNYG00000011272	-	90	78.571	ENSPLAG00000009243	srsf6a	79	95.238	Poecilia_latipinna
ENSPNYG00000011272	-	51	92.973	ENSPMEG00000006042	SRSF6	80	95.628	Poecilia_mexicana
ENSPNYG00000011272	-	51	87.634	ENSPPYG00000011019	SRSF6	53	88.525	Pongo_abelii
ENSPNYG00000011272	-	51	86.022	ENSPCAG00000010954	SRSF6	55	86.885	Procavia_capensis
ENSPNYG00000011272	-	51	87.097	ENSPCOG00000026364	SRSF6	58	93.590	Propithecus_coquereli
ENSPNYG00000011272	-	51	87.097	ENSPVAG00000015232	SRSF6	53	88.525	Pteropus_vampyrus
ENSPNYG00000011272	-	51	87.634	ENSRNOG00000006380	Srsf6	53	88.525	Rattus_norvegicus
ENSPNYG00000011272	-	51	86.559	ENSRBIG00000041414	SRSF6	98	60.432	Rhinopithecus_bieti
ENSPNYG00000011272	-	51	87.634	ENSRROG00000029989	SRSF6	58	93.590	Rhinopithecus_roxellana
ENSPNYG00000011272	-	51	87.634	ENSSBOG00000033708	-	58	93.590	Saimiri_boliviensis_boliviensis
ENSPNYG00000011272	-	51	86.559	ENSSHAG00000012805	SRSF6	53	88.525	Sarcophilus_harrisii
ENSPNYG00000011272	-	66	79.583	ENSSFOG00015015169	SRSF6	59	92.896	Scleropages_formosus
ENSPNYG00000011272	-	50	81.522	ENSSMAG00000017447	-	55	82.514	Scophthalmus_maximus
ENSPNYG00000011272	-	90	89.297	ENSSDUG00000016097	srsf6a	52	98.907	Seriola_dumerili
ENSPNYG00000011272	-	90	89.297	ENSSLDG00000022841	srsf6a	94	89.264	Seriola_lalandi_dorsalis
ENSPNYG00000011272	-	51	89.189	ENSSPUG00000004967	SRSF6	98	59.441	Sphenodon_punctatus
ENSPNYG00000011272	-	88	81.481	ENSSPAG00000002362	srsf6a	84	96.809	Stegastes_partitus
ENSPNYG00000011272	-	51	87.634	ENSSSCG00000007362	SRSF6	60	88.525	Sus_scrofa
ENSPNYG00000011272	-	88	80.805	ENSTNIG00000001692	srsf6a	56	95.628	Tetraodon_nigroviridis
ENSPNYG00000011272	-	51	87.634	ENSUAMG00000003559	SRSF6	58	94.872	Ursus_americanus