EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000012666 (Gene tree)
Gene ID: 102211130
Gene Symbol: rbck1
Alias: zgc:91964
Full Name: RANBP2-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 8219 bases
Position: chrJH419301.1:546610-554828
Accession: 102211130
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000016775	zf-RanBP	PF00641.18	3.2e-06	1	1
ENSPNYP00000016789	zf-RanBP	PF00641.18	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000017209	-	1551	XM_005740001	ENSPNYP00000016789	516 (aa)	XP_005740058	-
ENSPNYT00000017195	-	1509	-	ENSPNYP00000016775	502 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000012666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000012666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000012666	rbck1	97	44.906	ENSPNYG00000022601	shrprbck1r	74	44.925

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000012666	rbck1	99	98.054	ENSACLG00000020380	rbck1	99	98.054	Astatotilapia_calliptera
ENSPNYG00000012666	rbck1	99	58.984	ENSAMXG00000004941	rbck1	97	59.259	Astyanax_mexicanus
ENSPNYG00000012666	rbck1	98	77.075	ENSCVAG00000002649	rbck1	97	77.075	Cyprinodon_variegatus
ENSPNYG00000012666	rbck1	99	63.511	ENSELUG00000022786	rbck1	96	62.941	Esox_lucius
ENSPNYG00000012666	rbck1	98	78.656	ENSFHEG00000016918	rbck1	96	79.521	Fundulus_heteroclitus
ENSPNYG00000012666	rbck1	99	97.860	ENSHBUG00000008208	rbck1	99	97.860	Haplochromis_burtoni
ENSPNYG00000012666	rbck1	99	98.249	ENSMZEG00005005317	rbck1	99	98.249	Maylandia_zebra
ENSPNYG00000012666	rbck1	85	95.890	ENSNBRG00000006179	rbck1	91	95.890	Neolamprologus_brichardi
ENSPNYG00000012666	rbck1	98	96.238	ENSONIG00000006803	rbck1	98	96.238	Oreochromis_niloticus
ENSPNYG00000012666	rbck1	99	80.806	ENSSDUG00000023631	rbck1	99	81.034	Seriola_dumerili
ENSPNYG00000012666	rbck1	99	80.769	ENSSLDG00000008305	rbck1	99	80.268	Seriola_lalandi_dorsalis
ENSPNYG00000012666	rbck1	98	81.605	ENSSPAG00000009432	rbck1	98	81.287	Stegastes_partitus