EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000012940 (Gene tree)
Gene ID: 102197522
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 25328 bases
Position: chrJH419381.1:3893-29220
Accession: 102197522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000017281	Rif1_N	PF12231.8	2e-80	1	1
ENSPNYP00000017241	Rif1_N	PF12231.8	6.7e-73	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000017713	-	6597	-	ENSPNYP00000017281	2198 (aa)	-	-
ENSPNYT00000017673	-	6537	XM_005746249	ENSPNYP00000017241	2178 (aa)	XP_005746306	-

Gene Model

Click here to download ENSPNYG00000012940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000012940's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000012940	rif1	68	49.007	ENSG00000080345	RIF1	97	53.155	Homo_sapiens
ENSPNYG00000012940	rif1	98	71.108	ENSAPOG00000011073	rif1	98	63.914	Acanthochromis_polyacanthus
ENSPNYG00000012940	rif1	68	49.165	ENSAMEG00000008461	RIF1	64	49.165	Ailuropoda_melanoleuca
ENSPNYG00000012940	rif1	99	77.076	ENSACIG00000017765	rif1	99	77.093	Amphilophus_citrinellus
ENSPNYG00000012940	rif1	99	71.388	ENSAOCG00000017231	rif1	96	66.923	Amphiprion_ocellaris
ENSPNYG00000012940	rif1	96	75.815	ENSAPEG00000013228	rif1	97	75.815	Amphiprion_percula
ENSPNYG00000012940	rif1	92	78.627	ENSATEG00000022887	rif1	97	78.627	Anabas_testudineus
ENSPNYG00000012940	rif1	62	54.267	ENSAPLG00000007092	RIF1	70	49.882	Anas_platyrhynchos
ENSPNYG00000012940	rif1	70	46.713	ENSACAG00000003714	RIF1	68	47.022	Anolis_carolinensis
ENSPNYG00000012940	rif1	68	49.643	ENSANAG00000024840	RIF1	63	49.722	Aotus_nancymaae
ENSPNYG00000012940	rif1	88	64.000	ENSAMXG00000010910	rif1	76	64.000	Astyanax_mexicanus
ENSPNYG00000012940	rif1	62	49.288	ENSBTAG00000021020	RIF1	62	51.724	Bos_taurus
ENSPNYG00000012940	rif1	68	49.329	ENSCJAG00000003138	RIF1	64	49.408	Callithrix_jacchus
ENSPNYG00000012940	rif1	68	49.322	ENSCAFG00000005670	RIF1	61	49.322	Canis_familiaris
ENSPNYG00000012940	rif1	68	49.322	ENSCAFG00020016401	RIF1	64	49.322	Canis_lupus_dingo
ENSPNYG00000012940	rif1	69	49.209	ENSCHIG00000020327	RIF1	80	46.440	Capra_hircus
ENSPNYG00000012940	rif1	70	47.522	ENSTSYG00000008861	RIF1	65	47.522	Carlito_syrichta
ENSPNYG00000012940	rif1	63	40.816	ENSCAPG00000008957	RIF1	54	41.667	Cavia_aperea
ENSPNYG00000012940	rif1	73	45.192	ENSCPOG00000037898	RIF1	74	44.606	Cavia_porcellus
ENSPNYG00000012940	rif1	68	47.536	ENSCCAG00000024760	RIF1	63	47.702	Cebus_capucinus
ENSPNYG00000012940	rif1	67	49.245	ENSCATG00000033353	RIF1	63	49.324	Cercocebus_atys
ENSPNYG00000012940	rif1	69	47.196	ENSCLAG00000001517	RIF1	67	47.233	Chinchilla_lanigera
ENSPNYG00000012940	rif1	68	49.404	ENSCSAG00000016089	RIF1	64	49.483	Chlorocebus_sabaeus
ENSPNYG00000012940	rif1	65	49.778	ENSCHOG00000007187	RIF1	72	50.667	Choloepus_hoffmanni
ENSPNYG00000012940	rif1	71	50.539	ENSCPBG00000025885	RIF1	67	52.760	Chrysemys_picta_bellii
ENSPNYG00000012940	rif1	79	47.943	ENSCANG00000028962	RIF1	71	49.404	Colobus_angolensis_palliatus
ENSPNYG00000012940	rif1	73	46.852	ENSCGRG00001024589	Rif1	69	47.141	Cricetulus_griseus_chok1gshd
ENSPNYG00000012940	rif1	72	48.304	ENSCGRG00000010713	Rif1	68	48.604	Cricetulus_griseus_crigri
ENSPNYG00000012940	rif1	94	66.806	ENSCSEG00000003945	rif1	93	66.806	Cynoglossus_semilaevis
ENSPNYG00000012940	rif1	99	71.442	ENSCVAG00000022479	rif1	96	71.442	Cyprinodon_variegatus
ENSPNYG00000012940	rif1	93	61.756	ENSDARG00000062650	rif1	75	61.756	Danio_rerio
ENSPNYG00000012940	rif1	83	47.494	ENSDNOG00000011194	RIF1	80	44.005	Dasypus_novemcinctus
ENSPNYG00000012940	rif1	63	57.965	ENSETEG00000012421	RIF1	60	57.965	Echinops_telfairi
ENSPNYG00000012940	rif1	72	68.750	ENSEASG00005023434	RIF1	74	68.750	Equus_asinus_asinus
ENSPNYG00000012940	rif1	65	56.652	ENSECAG00000012679	RIF1	78	45.133	Equus_caballus
ENSPNYG00000012940	rif1	72	64.110	ENSELUG00000006826	rif1	73	66.698	Esox_lucius
ENSPNYG00000012940	rif1	69	48.940	ENSFCAG00000029742	RIF1	64	49.018	Felis_catus
ENSPNYG00000012940	rif1	72	48.602	ENSFDAG00000006538	RIF1	67	48.805	Fukomys_damarensis
ENSPNYG00000012940	rif1	99	68.824	ENSFHEG00000013721	rif1	99	60.051	Fundulus_heteroclitus
ENSPNYG00000012940	rif1	66	64.394	ENSGMOG00000003517	rif1	99	64.394	Gadus_morhua
ENSPNYG00000012940	rif1	96	73.936	ENSGAFG00000017196	rif1	99	73.936	Gambusia_affinis
ENSPNYG00000012940	rif1	90	78.298	ENSGACG00000008579	rif1	94	76.829	Gasterosteus_aculeatus
ENSPNYG00000012940	rif1	70	51.140	ENSGAGG00000012595	RIF1	75	50.535	Gopherus_agassizii
ENSPNYG00000012940	rif1	57	56.710	ENSGGOG00000040178	RIF1	58	56.710	Gorilla_gorilla
ENSPNYG00000012940	rif1	99	85.930	ENSHBUG00000007125	rif1	99	86.658	Haplochromis_burtoni
ENSPNYG00000012940	rif1	65	48.798	ENSHGLG00100009807	RIF1	73	48.998	Heterocephalus_glaber_male
ENSPNYG00000012940	rif1	97	64.702	ENSHCOG00000015943	rif1	84	64.840	Hippocampus_comes
ENSPNYG00000012940	rif1	94	53.561	ENSIPUG00000021703	rif1	76	59.858	Ictalurus_punctatus
ENSPNYG00000012940	rif1	75	47.760	ENSSTOG00000020712	RIF1	69	48.815	Ictidomys_tridecemlineatus
ENSPNYG00000012940	rif1	73	45.235	ENSJJAG00000023000	Rif1	69	45.729	Jaculus_jaculus
ENSPNYG00000012940	rif1	99	76.454	ENSKMAG00000002852	rif1	95	76.454	Kryptolebias_marmoratus
ENSPNYG00000012940	rif1	99	72.962	ENSLBEG00000023196	rif1	87	73.031	Labrus_bergylta
ENSPNYG00000012940	rif1	71	52.262	ENSLACG00000005425	RIF1	70	52.262	Latimeria_chalumnae
ENSPNYG00000012940	rif1	62	52.997	ENSLOCG00000002657	rif1	63	54.770	Lepisosteus_oculatus
ENSPNYG00000012940	rif1	68	49.487	ENSLAFG00000009796	RIF1	65	49.487	Loxodonta_africana
ENSPNYG00000012940	rif1	67	49.166	ENSMFAG00000032233	RIF1	63	49.244	Macaca_fascicularis
ENSPNYG00000012940	rif1	67	49.166	ENSMMUG00000008611	RIF1	63	49.244	Macaca_mulatta
ENSPNYG00000012940	rif1	79	49.208	ENSMNEG00000031616	RIF1	72	49.286	Macaca_nemestrina
ENSPNYG00000012940	rif1	67	49.245	ENSMLEG00000042945	RIF1	63	49.324	Mandrillus_leucophaeus
ENSPNYG00000012940	rif1	99	59.822	ENSMAMG00000001745	rif1	86	69.465	Mastacembelus_armatus
ENSPNYG00000012940	rif1	100	96.560	ENSMZEG00005020920	rif1	100	96.560	Maylandia_zebra
ENSPNYG00000012940	rif1	59	54.008	ENSMGAG00000012732	RIF1	62	54.008	Meleagris_gallopavo
ENSPNYG00000012940	rif1	70	63.536	ENSMAUG00000013158	Rif1	67	63.536	Mesocricetus_auratus
ENSPNYG00000012940	rif1	70	48.439	ENSMICG00000046127	RIF1	64	48.626	Microcebus_murinus
ENSPNYG00000012940	rif1	72	46.295	ENSMOCG00000009381	Rif1	68	46.142	Microtus_ochrogaster
ENSPNYG00000012940	rif1	99	73.816	ENSMMOG00000006519	rif1	96	73.816	Mola_mola
ENSPNYG00000012940	rif1	72	49.390	ENSMODG00000003703	RIF1	68	49.085	Monodelphis_domestica
ENSPNYG00000012940	rif1	98	66.732	ENSMALG00000016759	rif1	99	66.470	Monopterus_albus
ENSPNYG00000012940	rif1	68	49.227	MGP_CAROLIEiJ_G0023555	Rif1	66	49.715	Mus_caroli
ENSPNYG00000012940	rif1	69	47.462	ENSMUSG00000036202	Rif1	65	47.846	Mus_musculus
ENSPNYG00000012940	rif1	67	46.737	MGP_PahariEiJ_G0025006	Rif1	71	46.037	Mus_pahari
ENSPNYG00000012940	rif1	69	48.246	MGP_SPRETEiJ_G0024476	Rif1	72	46.127	Mus_spretus
ENSPNYG00000012940	rif1	75	46.356	ENSMPUG00000000371	RIF1	71	46.356	Mustela_putorius_furo
ENSPNYG00000012940	rif1	56	47.239	ENSMLUG00000003376	RIF1	59	47.239	Myotis_lucifugus
ENSPNYG00000012940	rif1	71	48.092	ENSNGAG00000009268	Rif1	68	48.092	Nannospalax_galili
ENSPNYG00000012940	rif1	99	89.991	ENSNBRG00000014257	rif1	99	90.474	Neolamprologus_brichardi
ENSPNYG00000012940	rif1	68	48.583	ENSNLEG00000010955	RIF1	63	48.817	Nomascus_leucogenys
ENSPNYG00000012940	rif1	53	61.435	ENSMEUG00000007601	-	51	61.435	Notamacropus_eugenii
ENSPNYG00000012940	rif1	67	47.283	ENSODEG00000003950	RIF1	74	45.481	Octodon_degus
ENSPNYG00000012940	rif1	99	84.478	ENSONIG00000013657	rif1	99	84.224	Oreochromis_niloticus
ENSPNYG00000012940	rif1	58	53.744	ENSOANG00000006078	-	55	54.398	Ornithorhynchus_anatinus
ENSPNYG00000012940	rif1	71	47.984	ENSOCUG00000017435	RIF1	67	48.644	Oryctolagus_cuniculus
ENSPNYG00000012940	rif1	99	70.533	ENSORLG00020001302	rif1	95	70.533	Oryzias_latipes_hni
ENSPNYG00000012940	rif1	99	56.163	ENSORLG00015000009	rif1	99	52.971	Oryzias_latipes_hsok
ENSPNYG00000012940	rif1	99	70.732	ENSOMEG00000021513	rif1	99	52.629	Oryzias_melastigma
ENSPNYG00000012940	rif1	70	49.841	ENSOGAG00000006141	RIF1	65	49.841	Otolemur_garnettii
ENSPNYG00000012940	rif1	69	49.763	ENSOARG00000008930	RIF1	64	49.763	Ovis_aries
ENSPNYG00000012940	rif1	68	48.928	ENSPPAG00000023754	RIF1	63	49.006	Pan_paniscus
ENSPNYG00000012940	rif1	69	48.704	ENSPPRG00000003618	RIF1	64	48.782	Panthera_pardus
ENSPNYG00000012940	rif1	69	48.704	ENSPTIG00000020652	RIF1	64	48.782	Panthera_tigris_altaica
ENSPNYG00000012940	rif1	68	49.007	ENSPTRG00000012534	RIF1	63	49.085	Pan_troglodytes
ENSPNYG00000012940	rif1	67	49.325	ENSPANG00000008525	RIF1	63	49.403	Papio_anubis
ENSPNYG00000012940	rif1	94	62.931	ENSPKIG00000004267	rif1	90	54.065	Paramormyrops_kingsleyae
ENSPNYG00000012940	rif1	81	61.861	ENSPMGG00000016141	rif1	94	60.093	Periophthalmus_magnuspinnatus
ENSPNYG00000012940	rif1	71	48.714	ENSPEMG00000000446	Rif1	67	49.058	Peromyscus_maniculatus_bairdii
ENSPNYG00000012940	rif1	72	47.813	ENSPCIG00000009185	RIF1	69	47.813	Phascolarctos_cinereus
ENSPNYG00000012940	rif1	99	74.765	ENSPFOG00000017804	rif1	96	74.765	Poecilia_formosa
ENSPNYG00000012940	rif1	92	73.296	ENSPFOG00000000554	-	96	73.296	Poecilia_formosa
ENSPNYG00000012940	rif1	99	60.534	ENSPLAG00000017945	rif1	99	60.889	Poecilia_latipinna
ENSPNYG00000012940	rif1	89	72.323	ENSPMEG00000006897	-	96	72.323	Poecilia_mexicana
ENSPNYG00000012940	rif1	96	72.422	ENSPREG00000018052	rif1	99	72.422	Poecilia_reticulata
ENSPNYG00000012940	rif1	68	49.245	ENSPPYG00000012846	RIF1	63	49.324	Pongo_abelii
ENSPNYG00000012940	rif1	69	48.819	ENSPCOG00000027888	RIF1	63	49.052	Propithecus_coquereli
ENSPNYG00000012940	rif1	59	58.607	ENSPVAG00000014276	RIF1	57	58.607	Pteropus_vampyrus
ENSPNYG00000012940	rif1	88	63.456	ENSPNAG00000016685	rif1	75	63.456	Pygocentrus_nattereri
ENSPNYG00000012940	rif1	71	46.065	ENSRNOG00000054901	Rif1	67	47.201	Rattus_norvegicus
ENSPNYG00000012940	rif1	80	48.832	ENSRBIG00000003704	RIF1	71	48.991	Rhinopithecus_bieti
ENSPNYG00000012940	rif1	83	48.466	ENSRROG00000028206	RIF1	73	48.541	Rhinopithecus_roxellana
ENSPNYG00000012940	rif1	68	47.246	ENSSBOG00000029530	RIF1	62	46.939	Saimiri_boliviensis_boliviensis
ENSPNYG00000012940	rif1	74	46.974	ENSSHAG00000018552	RIF1	66	49.643	Sarcophilus_harrisii
ENSPNYG00000012940	rif1	84	60.440	ENSSFOG00015021539	rif1	85	60.440	Scleropages_formosus
ENSPNYG00000012940	rif1	99	64.899	ENSSMAG00000011704	rif1	95	64.899	Scophthalmus_maximus
ENSPNYG00000012940	rif1	99	79.330	ENSSDUG00000015632	rif1	98	79.330	Seriola_dumerili
ENSPNYG00000012940	rif1	99	79.535	ENSSLDG00000019531	rif1	97	79.628	Seriola_lalandi_dorsalis
ENSPNYG00000012940	rif1	51	51.211	ENSSPUG00000003062	RIF1	52	50.834	Sphenodon_punctatus
ENSPNYG00000012940	rif1	68	76.531	ENSSPAG00000018359	rif1	99	76.531	Stegastes_partitus
ENSPNYG00000012940	rif1	69	49.099	ENSSSCG00000016395	RIF1	64	49.451	Sus_scrofa
ENSPNYG00000012940	rif1	99	75.259	ENSTRUG00000015808	rif1	95	75.259	Takifugu_rubripes
ENSPNYG00000012940	rif1	99	56.158	ENSTNIG00000011538	rif1	93	63.095	Tetraodon_nigroviridis
ENSPNYG00000012940	rif1	61	53.157	ENSTBEG00000016082	RIF1	56	53.157	Tupaia_belangeri
ENSPNYG00000012940	rif1	71	47.839	ENSTTRG00000011190	RIF1	65	47.839	Tursiops_truncatus
ENSPNYG00000012940	rif1	58	46.667	ENSUAMG00000026385	RIF1	71	47.840	Ursus_americanus
ENSPNYG00000012940	rif1	68	48.761	ENSUMAG00000000337	RIF1	75	47.840	Ursus_maritimus
ENSPNYG00000012940	rif1	68	48.679	ENSVPAG00000002162	RIF1	62	48.759	Vicugna_pacos
ENSPNYG00000012940	rif1	69	49.522	ENSVVUG00000011293	RIF1	65	49.522	Vulpes_vulpes
ENSPNYG00000012940	rif1	76	46.458	ENSXETG00000004530	rif1	73	46.687	Xenopus_tropicalis
ENSPNYG00000012940	rif1	99	54.684	ENSXMAG00000000506	rif1	99	55.447	Xiphophorus_maculatus