EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000013397 (Gene tree)
Gene ID: 102196749
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 21909 bases
Position: chrJH419343.1:1192193-1214101
Accession: 102196749
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000017834	EST1	PF10374.9	5.2e-24	1	1
ENSPNYP00000017797	EST1	PF10374.9	5.3e-24	1	1
ENSPNYP00000017770	EST1	PF10374.9	5.5e-24	1	1
ENSPNYP00000017797	EST1_DNA_bind	PF10373.9	7.7e-41	1	1
ENSPNYP00000017770	EST1_DNA_bind	PF10373.9	8.3e-41	1	1
ENSPNYP00000017834	EST1_DNA_bind	PF10373.9	1.6e-21	1	2
ENSPNYP00000017834	EST1_DNA_bind	PF10373.9	1.6e-21	2	2
ENSPNYP00000017797	PIN_4	PF13638.6	3.2e-07	1	1
ENSPNYP00000017770	PIN_4	PF13638.6	3.5e-07	1	1
ENSPNYP00000017834	PIN_4	PF13638.6	3.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000018276	-	3237	-	ENSPNYP00000017834	1078 (aa)	-	-
ENSPNYT00000018239	-	5465	-	ENSPNYP00000017797	1096 (aa)	-	-
ENSPNYT00000018212	-	5564	XM_005744056	ENSPNYP00000017770	1129 (aa)	XP_005744113	UPI0003AF71E4

Gene Model

Click here to download ENSPNYG00000013397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000013397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000013397	smg5	99	60.939	ENSG00000198952	SMG5	93	63.657	Homo_sapiens
ENSPNYG00000013397	smg5	100	91.182	ENSAPOG00000019690	smg5	100	90.925	Acanthochromis_polyacanthus
ENSPNYG00000013397	smg5	98	58.882	ENSAMEG00000014458	SMG5	100	59.156	Ailuropoda_melanoleuca
ENSPNYG00000013397	smg5	100	85.310	ENSACIG00000001353	smg5	99	85.575	Amphilophus_citrinellus
ENSPNYG00000013397	smg5	100	91.512	ENSAOCG00000019483	smg5	100	91.512	Amphiprion_ocellaris
ENSPNYG00000013397	smg5	100	91.247	ENSAPEG00000022949	smg5	100	91.512	Amphiprion_percula
ENSPNYG00000013397	smg5	100	89.744	ENSATEG00000005348	smg5	100	88.673	Anabas_testudineus
ENSPNYG00000013397	smg5	98	63.172	ENSAPLG00000010263	SMG5	100	61.752	Anas_platyrhynchos
ENSPNYG00000013397	smg5	99	61.239	ENSANAG00000032899	SMG5	99	59.789	Aotus_nancymaae
ENSPNYG00000013397	smg5	100	99.026	ENSACLG00000009311	smg5	100	99.026	Astatotilapia_calliptera
ENSPNYG00000013397	smg5	100	78.799	ENSAMXG00000024616	smg5	100	78.395	Astyanax_mexicanus
ENSPNYG00000013397	smg5	86	49.756	ENSBTAG00000021747	-	92	49.515	Bos_taurus
ENSPNYG00000013397	smg5	99	60.579	ENSBTAG00000009435	SMG5	99	59.683	Bos_taurus
ENSPNYG00000013397	smg5	99	61.239	ENSCJAG00000005684	SMG5	99	59.789	Callithrix_jacchus
ENSPNYG00000013397	smg5	99	60.391	ENSCAFG00000016839	SMG5	99	59.541	Canis_familiaris
ENSPNYG00000013397	smg5	99	60.391	ENSCAFG00020006061	SMG5	99	59.541	Canis_lupus_dingo
ENSPNYG00000013397	smg5	99	61.396	ENSCHIG00000007709	SMG5	99	59.736	Capra_hircus
ENSPNYG00000013397	smg5	83	52.941	ENSCHIG00000006323	-	92	50.000	Capra_hircus
ENSPNYG00000013397	smg5	99	61.681	ENSTSYG00000004099	SMG5	99	59.649	Carlito_syrichta
ENSPNYG00000013397	smg5	91	53.279	ENSCAPG00000003631	SMG5	92	54.645	Cavia_aperea
ENSPNYG00000013397	smg5	99	61.062	ENSCPOG00000015696	SMG5	93	63.492	Cavia_porcellus
ENSPNYG00000013397	smg5	99	60.850	ENSCCAG00000027409	SMG5	99	59.350	Cebus_capucinus
ENSPNYG00000013397	smg5	99	61.027	ENSCATG00000030539	SMG5	93	63.883	Cercocebus_atys
ENSPNYG00000013397	smg5	99	60.796	ENSCLAG00000003983	SMG5	93	63.657	Chinchilla_lanigera
ENSPNYG00000013397	smg5	99	61.027	ENSCSAG00000002120	SMG5	93	63.883	Chlorocebus_sabaeus
ENSPNYG00000013397	smg5	51	75.451	ENSCHOG00000008741	-	56	75.451	Choloepus_hoffmanni
ENSPNYG00000013397	smg5	97	61.874	ENSCPBG00000025848	SMG5	100	61.368	Chrysemys_picta_bellii
ENSPNYG00000013397	smg5	75	37.811	ENSCING00000008706	-	89	37.811	Ciona_intestinalis
ENSPNYG00000013397	smg5	99	58.870	ENSCANG00000029208	SMG5	93	63.657	Colobus_angolensis_palliatus
ENSPNYG00000013397	smg5	99	58.563	ENSCGRG00001006336	Smg5	99	58.437	Cricetulus_griseus_chok1gshd
ENSPNYG00000013397	smg5	98	60.650	ENSCGRG00000005111	Smg5	100	60.253	Cricetulus_griseus_crigri
ENSPNYG00000013397	smg5	100	85.411	ENSCSEG00000014220	smg5	100	84.527	Cynoglossus_semilaevis
ENSPNYG00000013397	smg5	100	72.276	ENSCVAG00000000529	smg5	99	72.365	Cyprinodon_variegatus
ENSPNYG00000013397	smg5	100	76.693	ENSDARG00000041481	smg5	100	77.221	Danio_rerio
ENSPNYG00000013397	smg5	88	65.608	ENSDNOG00000000051	SMG5	99	57.797	Dasypus_novemcinctus
ENSPNYG00000013397	smg5	73	38.764	ENSDNOG00000039862	-	79	38.567	Dasypus_novemcinctus
ENSPNYG00000013397	smg5	99	61.504	ENSDORG00000010382	Smg5	99	56.095	Dipodomys_ordii
ENSPNYG00000013397	smg5	78	85.437	ENSETEG00000010336	SMG5	82	85.437	Echinops_telfairi
ENSPNYG00000013397	smg5	63	53.790	ENSEBUG00000003739	smg5	82	51.584	Eptatretus_burgeri
ENSPNYG00000013397	smg5	99	59.167	ENSEASG00005019122	SMG5	99	60.140	Equus_asinus_asinus
ENSPNYG00000013397	smg5	99	59.167	ENSECAG00000001389	SMG5	99	59.789	Equus_caballus
ENSPNYG00000013397	smg5	65	78.531	ENSEEUG00000012690	SMG5	75	77.183	Erinaceus_europaeus
ENSPNYG00000013397	smg5	100	81.003	ENSELUG00000012585	smg5	100	80.159	Esox_lucius
ENSPNYG00000013397	smg5	99	59.769	ENSFCAG00000011783	SMG5	99	60.018	Felis_catus
ENSPNYG00000013397	smg5	59	63.893	ENSFALG00000001166	-	96	61.185	Ficedula_albicollis
ENSPNYG00000013397	smg5	98	60.614	ENSFDAG00000017388	SMG5	91	65.000	Fukomys_damarensis
ENSPNYG00000013397	smg5	88	91.429	ENSFHEG00000013939	smg5	94	91.429	Fundulus_heteroclitus
ENSPNYG00000013397	smg5	100	78.223	ENSGMOG00000007310	smg5	100	78.378	Gadus_morhua
ENSPNYG00000013397	smg5	99	63.741	ENSGALG00000029918	-	99	61.545	Gallus_gallus
ENSPNYG00000013397	smg5	93	90.096	ENSGAFG00000021691	smg5	99	90.096	Gambusia_affinis
ENSPNYG00000013397	smg5	100	85.739	ENSGACG00000013142	smg5	100	84.507	Gasterosteus_aculeatus
ENSPNYG00000013397	smg5	99	63.740	ENSGAGG00000016131	SMG5	99	61.942	Gopherus_agassizii
ENSPNYG00000013397	smg5	99	61.150	ENSGGOG00000010932	SMG5	99	56.018	Gorilla_gorilla
ENSPNYG00000013397	smg5	100	99.380	ENSHBUG00000008654	smg5	100	99.380	Haplochromis_burtoni
ENSPNYG00000013397	smg5	99	60.762	ENSHGLG00000019152	SMG5	99	58.891	Heterocephalus_glaber_female
ENSPNYG00000013397	smg5	91	60.916	ENSHGLG00100015948	SMG5	99	58.858	Heterocephalus_glaber_male
ENSPNYG00000013397	smg5	86	76.991	ENSHCOG00000010229	smg5	94	82.410	Hippocampus_comes
ENSPNYG00000013397	smg5	100	77.309	ENSIPUG00000006624	Smg5	100	76.984	Ictalurus_punctatus
ENSPNYG00000013397	smg5	99	60.885	ENSSTOG00000001780	SMG5	92	64.884	Ictidomys_tridecemlineatus
ENSPNYG00000013397	smg5	99	60.915	ENSJJAG00000022763	Smg5	93	63.657	Jaculus_jaculus
ENSPNYG00000013397	smg5	100	88.240	ENSKMAG00000014586	smg5	100	88.703	Kryptolebias_marmoratus
ENSPNYG00000013397	smg5	100	88.574	ENSLBEG00000002145	smg5	100	88.938	Labrus_bergylta
ENSPNYG00000013397	smg5	99	56.602	ENSLACG00000010521	SMG5	99	56.629	Latimeria_chalumnae
ENSPNYG00000013397	smg5	100	68.310	ENSLOCG00000008380	smg5	99	71.444	Lepisosteus_oculatus
ENSPNYG00000013397	smg5	99	61.101	ENSLAFG00000006241	SMG5	99	59.682	Loxodonta_africana
ENSPNYG00000013397	smg5	99	61.150	ENSMFAG00000045357	SMG5	93	63.883	Macaca_fascicularis
ENSPNYG00000013397	smg5	99	61.327	ENSMMUG00000000090	SMG5	99	59.614	Macaca_mulatta
ENSPNYG00000013397	smg5	99	61.062	ENSMNEG00000044425	SMG5	93	63.883	Macaca_nemestrina
ENSPNYG00000013397	smg5	99	56.173	ENSMLEG00000041192	SMG5	93	65.237	Mandrillus_leucophaeus
ENSPNYG00000013397	smg5	100	88.251	ENSMAMG00000010683	smg5	100	87.898	Mastacembelus_armatus
ENSPNYG00000013397	smg5	68	86.296	ENSMZEG00005016543	smg5	100	86.296	Maylandia_zebra
ENSPNYG00000013397	smg5	100	85.752	ENSMZEG00005015815	smg5	99	85.752	Maylandia_zebra
ENSPNYG00000013397	smg5	99	60.635	ENSMAUG00000010381	Smg5	99	58.615	Mesocricetus_auratus
ENSPNYG00000013397	smg5	99	61.136	ENSMICG00000002257	SMG5	99	59.859	Microcebus_murinus
ENSPNYG00000013397	smg5	99	60.993	ENSMOCG00000016590	Smg5	99	60.124	Microtus_ochrogaster
ENSPNYG00000013397	smg5	100	84.656	ENSMMOG00000017199	smg5	100	84.921	Mola_mola
ENSPNYG00000013397	smg5	76	32.029	ENSMODG00000010675	-	88	33.333	Monodelphis_domestica
ENSPNYG00000013397	smg5	72	34.232	ENSMODG00000004735	-	87	34.324	Monodelphis_domestica
ENSPNYG00000013397	smg5	85	30.018	ENSMODG00000004511	-	79	34.699	Monodelphis_domestica
ENSPNYG00000013397	smg5	75	34.071	ENSMODG00000004532	-	89	34.411	Monodelphis_domestica
ENSPNYG00000013397	smg5	88	60.939	ENSMODG00000016901	SMG5	98	60.040	Monodelphis_domestica
ENSPNYG00000013397	smg5	100	87.710	ENSMALG00000010375	smg5	100	87.003	Monopterus_albus
ENSPNYG00000013397	smg5	99	60.958	MGP_CAROLIEiJ_G0025163	Smg5	100	87.709	Mus_caroli
ENSPNYG00000013397	smg5	99	60.958	ENSMUSG00000001415	Smg5	99	87.709	Mus_musculus
ENSPNYG00000013397	smg5	99	61.313	MGP_PahariEiJ_G0026606	Smg5	100	88.268	Mus_pahari
ENSPNYG00000013397	smg5	99	61.136	MGP_SPRETEiJ_G0026104	Smg5	100	87.709	Mus_spretus
ENSPNYG00000013397	smg5	97	57.598	ENSMPUG00000004546	SMG5	100	57.528	Mustela_putorius_furo
ENSPNYG00000013397	smg5	99	61.165	ENSMLUG00000008518	SMG5	99	60.211	Myotis_lucifugus
ENSPNYG00000013397	smg5	99	61.185	ENSNGAG00000020706	Smg5	99	60.194	Nannospalax_galili
ENSPNYG00000013397	smg5	76	52.113	ENSNGAG00000012101	-	85	48.655	Nannospalax_galili
ENSPNYG00000013397	smg5	97	81.079	ENSNBRG00000004332	smg5	97	79.890	Neolamprologus_brichardi
ENSPNYG00000013397	smg5	99	61.116	ENSNLEG00000012439	SMG5	93	63.883	Nomascus_leucogenys
ENSPNYG00000013397	smg5	99	60.265	ENSMEUG00000012834	SMG5	99	59.736	Notamacropus_eugenii
ENSPNYG00000013397	smg5	99	61.219	ENSOPRG00000009152	SMG5	92	65.116	Ochotona_princeps
ENSPNYG00000013397	smg5	99	59.789	ENSODEG00000012237	SMG5	93	64.334	Octodon_degus
ENSPNYG00000013397	smg5	100	97.171	ENSONIG00000008632	smg5	100	97.171	Oreochromis_niloticus
ENSPNYG00000013397	smg5	82	42.056	ENSOCUG00000023338	-	87	42.956	Oryctolagus_cuniculus
ENSPNYG00000013397	smg5	98	61.011	ENSOCUG00000012886	SMG5	100	59.302	Oryctolagus_cuniculus
ENSPNYG00000013397	smg5	100	84.513	ENSORLG00000016239	smg5	100	84.894	Oryzias_latipes
ENSPNYG00000013397	smg5	100	84.881	ENSORLG00020013127	smg5	100	84.881	Oryzias_latipes_hni
ENSPNYG00000013397	smg5	100	84.248	ENSORLG00015019014	smg5	100	84.704	Oryzias_latipes_hsok
ENSPNYG00000013397	smg5	84	83.368	ENSOMEG00000021330	smg5	93	83.333	Oryzias_melastigma
ENSPNYG00000013397	smg5	99	60.124	ENSOGAG00000004966	SMG5	99	59.419	Otolemur_garnettii
ENSPNYG00000013397	smg5	86	50.243	ENSOARG00000011963	-	92	50.243	Ovis_aries
ENSPNYG00000013397	smg5	99	61.096	ENSOARG00000005778	SMG5	93	75.395	Ovis_aries
ENSPNYG00000013397	smg5	99	60.973	ENSPPAG00000011996	SMG5	93	63.657	Pan_paniscus
ENSPNYG00000013397	smg5	91	78.218	ENSPPRG00000011901	SMG5	100	59.336	Panthera_pardus
ENSPNYG00000013397	smg5	90	76.011	ENSPTIG00000007892	SMG5	98	55.989	Panthera_tigris_altaica
ENSPNYG00000013397	smg5	86	78.328	ENSPTRG00000049282	-	83	76.404	Pan_troglodytes
ENSPNYG00000013397	smg5	99	60.973	ENSPTRG00000023925	SMG5	93	63.657	Pan_troglodytes
ENSPNYG00000013397	smg5	99	61.027	ENSPANG00000011201	SMG5	93	63.883	Papio_anubis
ENSPNYG00000013397	smg5	100	75.685	ENSPKIG00000009402	smg5	100	75.376	Paramormyrops_kingsleyae
ENSPNYG00000013397	smg5	98	63.555	ENSPSIG00000015198	SMG5	100	61.918	Pelodiscus_sinensis
ENSPNYG00000013397	smg5	100	72.703	ENSPMGG00000010465	smg5	100	71.770	Periophthalmus_magnuspinnatus
ENSPNYG00000013397	smg5	99	61.313	ENSPEMG00000001819	Smg5	99	58.348	Peromyscus_maniculatus_bairdii
ENSPNYG00000013397	smg5	85	61.916	ENSPMAG00000000410	smg5	99	46.655	Petromyzon_marinus
ENSPNYG00000013397	smg5	99	61.333	ENSPCIG00000018938	SMG5	99	60.617	Phascolarctos_cinereus
ENSPNYG00000013397	smg5	100	87.511	ENSPFOG00000010191	smg5	100	86.980	Poecilia_formosa
ENSPNYG00000013397	smg5	100	87.600	ENSPLAG00000009332	smg5	100	87.157	Poecilia_latipinna
ENSPNYG00000013397	smg5	100	87.600	ENSPMEG00000014105	smg5	100	87.068	Poecilia_mexicana
ENSPNYG00000013397	smg5	100	87.511	ENSPREG00000017713	smg5	100	87.422	Poecilia_reticulata
ENSPNYG00000013397	smg5	99	61.027	ENSPPYG00000000723	SMG5	93	63.657	Pongo_abelii
ENSPNYG00000013397	smg5	80	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSPNYG00000013397	smg5	99	61.313	ENSPCOG00000004741	SMG5	99	60.035	Propithecus_coquereli
ENSPNYG00000013397	smg5	93	64.336	ENSPVAG00000016748	SMG5	99	53.907	Pteropus_vampyrus
ENSPNYG00000013397	smg5	100	78.073	ENSPNAG00000028363	smg5	100	76.021	Pygocentrus_nattereri
ENSPNYG00000013397	smg5	99	60.758	ENSRNOG00000019590	Smg5	91	64.871	Rattus_norvegicus
ENSPNYG00000013397	smg5	99	61.027	ENSRBIG00000027428	SMG5	93	63.883	Rhinopithecus_bieti
ENSPNYG00000013397	smg5	99	60.939	ENSRROG00000030035	SMG5	93	63.883	Rhinopithecus_roxellana
ENSPNYG00000013397	smg5	99	61.027	ENSSBOG00000033339	SMG5	99	59.614	Saimiri_boliviensis_boliviensis
ENSPNYG00000013397	smg5	60	31.683	ENSSHAG00000000935	-	97	31.610	Sarcophilus_harrisii
ENSPNYG00000013397	smg5	98	60.628	ENSSHAG00000014163	SMG5	100	60.089	Sarcophilus_harrisii
ENSPNYG00000013397	smg5	76	38.636	ENSSHAG00000009572	-	79	41.076	Sarcophilus_harrisii
ENSPNYG00000013397	smg5	68	36.317	ENSSHAG00000000561	-	87	36.061	Sarcophilus_harrisii
ENSPNYG00000013397	smg5	100	76.119	ENSSFOG00015024175	smg5	100	75.814	Scleropages_formosus
ENSPNYG00000013397	smg5	100	89.036	ENSSMAG00000013059	smg5	100	89.134	Scophthalmus_maximus
ENSPNYG00000013397	smg5	100	90.589	ENSSDUG00000007122	smg5	100	89.807	Seriola_dumerili
ENSPNYG00000013397	smg5	100	90.026	ENSSLDG00000011418	smg5	100	90.212	Seriola_lalandi_dorsalis
ENSPNYG00000013397	smg5	85	70.863	ENSSARG00000012484	SMG5	94	70.863	Sorex_araneus
ENSPNYG00000013397	smg5	97	61.234	ENSSPUG00000002260	SMG5	100	61.538	Sphenodon_punctatus
ENSPNYG00000013397	smg5	100	90.661	ENSSPAG00000014266	smg5	100	90.845	Stegastes_partitus
ENSPNYG00000013397	smg5	91	60.260	ENSSSCG00000039308	-	99	46.784	Sus_scrofa
ENSPNYG00000013397	smg5	99	61.116	ENSSSCG00000006490	-	100	58.736	Sus_scrofa
ENSPNYG00000013397	smg5	99	63.443	ENSTGUG00000003748	-	99	62.511	Taeniopygia_guttata
ENSPNYG00000013397	smg5	100	79.595	ENSTRUG00000012580	smg5	100	78.628	Takifugu_rubripes
ENSPNYG00000013397	smg5	100	79.930	ENSTNIG00000010303	smg5	100	79.141	Tetraodon_nigroviridis
ENSPNYG00000013397	smg5	53	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSPNYG00000013397	smg5	99	56.864	ENSTTRG00000001401	SMG5	99	56.102	Tursiops_truncatus
ENSPNYG00000013397	smg5	92	76.429	ENSUAMG00000013721	SMG5	99	59.505	Ursus_americanus
ENSPNYG00000013397	smg5	91	74.568	ENSUMAG00000018041	SMG5	95	72.261	Ursus_maritimus
ENSPNYG00000013397	smg5	92	71.782	ENSVPAG00000009446	SMG5	99	52.551	Vicugna_pacos
ENSPNYG00000013397	smg5	99	59.947	ENSVVUG00000005887	SMG5	99	59.717	Vulpes_vulpes
ENSPNYG00000013397	smg5	82	54.586	ENSXETG00000033791	SMG5	95	54.639	Xenopus_tropicalis
ENSPNYG00000013397	smg5	92	92.973	ENSXCOG00000004379	smg5	99	93.956	Xiphophorus_couchianus
ENSPNYG00000013397	smg5	100	86.802	ENSXMAG00000013499	smg5	100	86.271	Xiphophorus_maculatus