EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000016731 (Gene tree)
Gene ID: 102192972
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 13060 bases
Position: chrJH419241.1:514754-527813
Accession: 102192972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000022183	UPF1_Zn_bind	PF09416.10	9.5e-75	1	1
ENSPNYP00000022183	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000022724	-	3539	XM_005730199	ENSPNYP00000022183	1101 (aa)	XP_005730256	UPI0003AF889A

Gene Model

Click here to download ENSPNYG00000016731's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000016731's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000016731	-	100	92.183	ENSPNYG00000003694	upf1	100	92.453

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000016731	-	100	92.239	ENSG00000005007	UPF1	100	92.328	Homo_sapiens
ENSPNYG00000016731	-	100	93.128	ENSAPOG00000023773	upf1	100	93.128	Acanthochromis_polyacanthus
ENSPNYG00000016731	-	100	98.820	ENSAPOG00000010916	-	100	98.820	Acanthochromis_polyacanthus
ENSPNYG00000016731	-	100	91.829	ENSAMEG00000011474	UPF1	100	91.918	Ailuropoda_melanoleuca
ENSPNYG00000016731	-	100	93.279	ENSACIG00000019949	upf1	100	93.279	Amphilophus_citrinellus
ENSPNYG00000016731	-	93	98.150	ENSACIG00000010985	-	100	98.150	Amphilophus_citrinellus
ENSPNYG00000016731	-	100	98.911	ENSAOCG00000006352	-	100	98.911	Amphiprion_ocellaris
ENSPNYG00000016731	-	100	92.643	ENSAOCG00000018519	upf1	100	92.921	Amphiprion_ocellaris
ENSPNYG00000016731	-	100	92.643	ENSAPEG00000016344	upf1	100	92.921	Amphiprion_percula
ENSPNYG00000016731	-	100	98.820	ENSAPEG00000006292	-	100	98.820	Amphiprion_percula
ENSPNYG00000016731	-	100	98.639	ENSATEG00000016606	-	100	98.639	Anabas_testudineus
ENSPNYG00000016731	-	100	91.592	ENSATEG00000017867	upf1	100	92.129	Anabas_testudineus
ENSPNYG00000016731	-	95	93.934	ENSAPLG00000009175	UPF1	100	93.934	Anas_platyrhynchos
ENSPNYG00000016731	-	95	92.395	ENSANAG00000024107	UPF1	95	92.395	Aotus_nancymaae
ENSPNYG00000016731	-	100	93.188	ENSACLG00000007181	upf1	100	93.188	Astatotilapia_calliptera
ENSPNYG00000016731	-	100	99.909	ENSACLG00000022630	-	100	99.909	Astatotilapia_calliptera
ENSPNYG00000016731	-	100	94.828	ENSAMXG00000042187	upf1	100	94.374	Astyanax_mexicanus
ENSPNYG00000016731	-	100	91.844	ENSBTAG00000020922	UPF1	100	91.933	Bos_taurus
ENSPNYG00000016731	-	97	49.354	WBGene00004880	smg-2	99	49.262	Caenorhabditis_elegans
ENSPNYG00000016731	-	100	91.512	ENSCJAG00000019627	UPF1	100	91.600	Callithrix_jacchus
ENSPNYG00000016731	-	100	91.600	ENSCAFG00000014578	UPF1	100	91.689	Canis_familiaris
ENSPNYG00000016731	-	100	92.328	ENSCAFG00020012347	UPF1	100	92.417	Canis_lupus_dingo
ENSPNYG00000016731	-	100	92.576	ENSCHIG00000011018	UPF1	100	92.665	Capra_hircus
ENSPNYG00000016731	-	95	93.536	ENSTSYG00000008877	UPF1	98	93.536	Carlito_syrichta
ENSPNYG00000016731	-	96	92.763	ENSCAPG00000005758	UPF1	95	93.441	Cavia_aperea
ENSPNYG00000016731	-	100	92.626	ENSCPOG00000025463	UPF1	100	92.626	Cavia_porcellus
ENSPNYG00000016731	-	100	92.239	ENSCCAG00000032175	UPF1	100	92.328	Cebus_capucinus
ENSPNYG00000016731	-	94	93.983	ENSCATG00000040306	UPF1	97	93.983	Cercocebus_atys
ENSPNYG00000016731	-	95	93.726	ENSCLAG00000004037	UPF1	99	93.726	Chinchilla_lanigera
ENSPNYG00000016731	-	100	92.239	ENSCSAG00000005276	UPF1	100	92.328	Chlorocebus_sabaeus
ENSPNYG00000016731	-	100	92.466	ENSCPBG00000012513	UPF1	100	92.466	Chrysemys_picta_bellii
ENSPNYG00000016731	-	77	79.532	ENSCING00000021399	-	99	78.571	Ciona_intestinalis
ENSPNYG00000016731	-	99	73.136	ENSCSAVG00000006533	-	99	73.405	Ciona_savignyi
ENSPNYG00000016731	-	95	93.726	ENSCANG00000029819	UPF1	97	93.726	Colobus_angolensis_palliatus
ENSPNYG00000016731	-	100	92.115	ENSCGRG00001021067	Upf1	100	92.204	Cricetulus_griseus_chok1gshd
ENSPNYG00000016731	-	95	93.156	ENSCGRG00000013480	Upf1	98	93.156	Cricetulus_griseus_crigri
ENSPNYG00000016731	-	100	97.822	ENSCSEG00000016159	-	100	97.822	Cynoglossus_semilaevis
ENSPNYG00000016731	-	100	88.033	ENSCSEG00000017239	upf1	100	87.873	Cynoglossus_semilaevis
ENSPNYG00000016731	-	100	98.185	ENSCVAG00000010561	upf1	100	98.185	Cyprinodon_variegatus
ENSPNYG00000016731	-	100	94.192	ENSDARG00000016302	upf1	100	94.465	Danio_rerio
ENSPNYG00000016731	-	95	91.263	ENSDORG00000009984	Upf1	95	91.263	Dipodomys_ordii
ENSPNYG00000016731	-	85	72.187	FBgn0030354	Upf1	82	70.667	Drosophila_melanogaster
ENSPNYG00000016731	-	54	86.634	ENSEBUG00000010069	upf1	96	86.964	Eptatretus_burgeri
ENSPNYG00000016731	-	100	92.487	ENSEASG00005006549	UPF1	100	92.576	Equus_asinus_asinus
ENSPNYG00000016731	-	100	92.487	ENSECAG00000010639	UPF1	100	92.576	Equus_caballus
ENSPNYG00000016731	-	100	95.217	ENSELUG00000012916	-	100	94.495	Esox_lucius
ENSPNYG00000016731	-	100	92.502	ENSELUG00000020917	upf1	100	92.141	Esox_lucius
ENSPNYG00000016731	-	100	91.512	ENSFCAG00000009757	UPF1	100	91.600	Felis_catus
ENSPNYG00000016731	-	95	94.185	ENSFALG00000009312	UPF1	96	94.185	Ficedula_albicollis
ENSPNYG00000016731	-	95	93.631	ENSFDAG00000014816	UPF1	99	93.631	Fukomys_damarensis
ENSPNYG00000016731	-	100	89.535	ENSFHEG00000006428	upf1	100	89.177	Fundulus_heteroclitus
ENSPNYG00000016731	-	86	98.367	ENSFHEG00000016276	-	96	98.367	Fundulus_heteroclitus
ENSPNYG00000016731	-	100	94.519	ENSGMOG00000007541	upf1	100	94.429	Gadus_morhua
ENSPNYG00000016731	-	100	92.404	ENSGALG00000003220	UPF1	100	92.404	Gallus_gallus
ENSPNYG00000016731	-	100	98.004	ENSGAFG00000004831	upf1	100	98.004	Gambusia_affinis
ENSPNYG00000016731	-	63	94.532	ENSGAFG00000015443	-	85	94.532	Gambusia_affinis
ENSPNYG00000016731	-	100	93.063	ENSGAGG00000022217	UPF1	100	93.153	Gopherus_agassizii
ENSPNYG00000016731	-	95	94.530	ENSGGOG00000002608	UPF1	99	94.530	Gorilla_gorilla
ENSPNYG00000016731	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSPNYG00000016731	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPNYG00000016731	-	100	91.247	ENSHGLG00000010900	UPF1	100	91.335	Heterocephalus_glaber_female
ENSPNYG00000016731	-	95	91.920	ENSHGLG00100005904	UPF1	96	91.920	Heterocephalus_glaber_male
ENSPNYG00000016731	-	100	97.824	ENSHCOG00000008918	upf1	100	97.824	Hippocampus_comes
ENSPNYG00000016731	-	100	94.828	ENSIPUG00000005108	UPF1	100	94.374	Ictalurus_punctatus
ENSPNYG00000016731	-	100	92.239	ENSSTOG00000009196	UPF1	100	92.328	Ictidomys_tridecemlineatus
ENSPNYG00000016731	-	100	91.281	ENSJJAG00000023151	Upf1	100	91.370	Jaculus_jaculus
ENSPNYG00000016731	-	100	98.367	ENSKMAG00000004962	upf1	100	98.367	Kryptolebias_marmoratus
ENSPNYG00000016731	-	100	98.094	ENSLBEG00000027848	-	100	98.094	Labrus_bergylta
ENSPNYG00000016731	-	100	91.667	ENSLBEG00000014862	upf1	100	92.115	Labrus_bergylta
ENSPNYG00000016731	-	63	94.261	ENSLACG00000008482	UPF1	100	94.261	Latimeria_chalumnae
ENSPNYG00000016731	-	100	95.640	ENSLOCG00000002072	upf1	100	95.640	Lepisosteus_oculatus
ENSPNYG00000016731	-	100	91.143	ENSLAFG00000014963	UPF1	100	91.231	Loxodonta_africana
ENSPNYG00000016731	-	100	92.164	ENSMFAG00000037748	UPF1	100	92.253	Macaca_fascicularis
ENSPNYG00000016731	-	100	91.918	ENSMMUG00000023286	UPF1	100	92.007	Macaca_mulatta
ENSPNYG00000016731	-	100	92.164	ENSMNEG00000000046	UPF1	100	92.253	Macaca_nemestrina
ENSPNYG00000016731	-	95	93.726	ENSMLEG00000028404	UPF1	99	93.726	Mandrillus_leucophaeus
ENSPNYG00000016731	-	100	92.039	ENSMAMG00000006229	upf1	100	92.576	Mastacembelus_armatus
ENSPNYG00000016731	-	100	98.548	ENSMAMG00000006231	-	100	98.548	Mastacembelus_armatus
ENSPNYG00000016731	-	100	99.909	ENSMZEG00005016386	-	100	99.909	Maylandia_zebra
ENSPNYG00000016731	-	100	92.183	ENSMZEG00005003489	upf1	100	92.453	Maylandia_zebra
ENSPNYG00000016731	-	95	93.447	ENSMGAG00000004745	UPF1	100	93.447	Meleagris_gallopavo
ENSPNYG00000016731	-	96	91.877	ENSMAUG00000011398	Upf1	95	93.156	Mesocricetus_auratus
ENSPNYG00000016731	-	100	92.150	ENSMICG00000001659	UPF1	100	92.239	Microcebus_murinus
ENSPNYG00000016731	-	100	91.385	ENSMOCG00000005699	Upf1	100	91.563	Microtus_ochrogaster
ENSPNYG00000016731	-	95	95.793	ENSMMOG00000007537	-	99	95.793	Mola_mola
ENSPNYG00000016731	-	100	92.371	ENSMMOG00000007881	upf1	100	92.740	Mola_mola
ENSPNYG00000016731	-	100	91.270	ENSMODG00000003689	UPF1	100	91.446	Monodelphis_domestica
ENSPNYG00000016731	-	100	92.371	ENSMALG00000000144	upf1	100	92.552	Monopterus_albus
ENSPNYG00000016731	-	100	96.745	ENSMALG00000018100	-	100	96.745	Monopterus_albus
ENSPNYG00000016731	-	100	92.025	MGP_CAROLIEiJ_G0031142	Upf1	100	92.115	Mus_caroli
ENSPNYG00000016731	-	100	92.025	ENSMUSG00000058301	Upf1	100	92.115	Mus_musculus
ENSPNYG00000016731	-	100	92.025	MGP_PahariEiJ_G0021607	Upf1	100	92.115	Mus_pahari
ENSPNYG00000016731	-	100	92.025	MGP_SPRETEiJ_G0032260	Upf1	100	92.115	Mus_spretus
ENSPNYG00000016731	-	100	92.328	ENSMPUG00000015516	UPF1	100	92.417	Mustela_putorius_furo
ENSPNYG00000016731	-	99	92.122	ENSMLUG00000012122	UPF1	99	92.211	Myotis_lucifugus
ENSPNYG00000016731	-	100	90.965	ENSNGAG00000024107	Upf1	100	91.054	Nannospalax_galili
ENSPNYG00000016731	-	100	96.235	ENSNBRG00000022069	-	100	98.641	Neolamprologus_brichardi
ENSPNYG00000016731	-	100	91.379	ENSNBRG00000000670	upf1	100	91.379	Neolamprologus_brichardi
ENSPNYG00000016731	-	95	87.928	ENSNLEG00000006062	UPF1	99	87.928	Nomascus_leucogenys
ENSPNYG00000016731	-	83	88.454	ENSMEUG00000014146	-	83	88.454	Notamacropus_eugenii
ENSPNYG00000016731	-	95	87.524	ENSOPRG00000014018	UPF1	99	86.948	Ochotona_princeps
ENSPNYG00000016731	-	100	92.619	ENSODEG00000012426	UPF1	100	92.619	Octodon_degus
ENSPNYG00000016731	-	100	92.363	ENSONIG00000010452	upf1	100	92.633	Oreochromis_niloticus
ENSPNYG00000016731	-	100	99.637	ENSONIG00000012729	-	100	99.637	Oreochromis_niloticus
ENSPNYG00000016731	-	100	91.504	ENSOANG00000004568	UPF1	100	91.320	Ornithorhynchus_anatinus
ENSPNYG00000016731	-	100	97.368	ENSORLG00000008453	upf1	100	97.368	Oryzias_latipes
ENSPNYG00000016731	-	100	97.280	ENSORLG00020014758	upf1	100	97.280	Oryzias_latipes_hni
ENSPNYG00000016731	-	100	97.280	ENSORLG00015010165	upf1	100	97.280	Oryzias_latipes_hsok
ENSPNYG00000016731	-	100	97.641	ENSOMEG00000003665	upf1	100	97.641	Oryzias_melastigma
ENSPNYG00000016731	-	100	92.328	ENSOGAG00000012866	UPF1	100	92.417	Otolemur_garnettii
ENSPNYG00000016731	-	96	90.800	ENSOARG00000010739	UPF1	100	90.800	Ovis_aries
ENSPNYG00000016731	-	95	93.726	ENSPPAG00000043884	UPF1	96	93.726	Pan_paniscus
ENSPNYG00000016731	-	100	91.512	ENSPPRG00000023470	UPF1	100	91.600	Panthera_pardus
ENSPNYG00000016731	-	95	92.433	ENSPTIG00000010159	UPF1	99	92.433	Panthera_tigris_altaica
ENSPNYG00000016731	-	100	92.164	ENSPTRG00000010721	UPF1	100	92.253	Pan_troglodytes
ENSPNYG00000016731	-	100	92.164	ENSPANG00000008847	UPF1	100	92.253	Papio_anubis
ENSPNYG00000016731	-	91	95.333	ENSPKIG00000006069	upf1	95	96.270	Paramormyrops_kingsleyae
ENSPNYG00000016731	-	70	93.342	ENSPSIG00000009491	UPF1	100	93.342	Pelodiscus_sinensis
ENSPNYG00000016731	-	100	91.131	ENSPMGG00000017327	upf1	100	91.222	Periophthalmus_magnuspinnatus
ENSPNYG00000016731	-	100	91.385	ENSPEMG00000001085	Upf1	100	91.474	Peromyscus_maniculatus_bairdii
ENSPNYG00000016731	-	100	87.838	ENSPMAG00000001206	upf1	100	87.838	Petromyzon_marinus
ENSPNYG00000016731	-	100	92.500	ENSPCIG00000006156	UPF1	100	92.589	Phascolarctos_cinereus
ENSPNYG00000016731	-	100	91.359	ENSPLAG00000018155	-	100	90.729	Poecilia_latipinna
ENSPNYG00000016731	-	100	98.094	ENSPLAG00000016232	-	100	98.094	Poecilia_latipinna
ENSPNYG00000016731	-	100	98.185	ENSPMEG00000016319	-	100	98.185	Poecilia_mexicana
ENSPNYG00000016731	-	100	91.931	ENSPMEG00000011443	-	100	91.553	Poecilia_mexicana
ENSPNYG00000016731	-	100	97.822	ENSPREG00000011247	-	100	97.822	Poecilia_reticulata
ENSPNYG00000016731	-	100	91.734	ENSPREG00000009940	upf1	100	91.285	Poecilia_reticulata
ENSPNYG00000016731	-	100	86.737	ENSPPYG00000009752	UPF1	100	86.384	Pongo_abelii
ENSPNYG00000016731	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSPNYG00000016731	-	100	92.000	ENSPCOG00000023813	UPF1	100	92.089	Propithecus_coquereli
ENSPNYG00000016731	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPNYG00000016731	-	100	94.374	ENSPNAG00000025614	upf1	100	93.920	Pygocentrus_nattereri
ENSPNYG00000016731	-	100	92.025	ENSRNOG00000020134	Upf1	100	92.115	Rattus_norvegicus
ENSPNYG00000016731	-	95	91.350	ENSRBIG00000013894	UPF1	98	94.317	Rhinopithecus_bieti
ENSPNYG00000016731	-	95	93.726	ENSRROG00000040935	UPF1	98	94.317	Rhinopithecus_roxellana
ENSPNYG00000016731	-	72	57.947	YMR080C	NAM7	82	57.947	Saccharomyces_cerevisiae
ENSPNYG00000016731	-	94	93.983	ENSSBOG00000023632	UPF1	96	93.983	Saimiri_boliviensis_boliviensis
ENSPNYG00000016731	-	95	93.643	ENSSHAG00000010499	UPF1	100	93.643	Sarcophilus_harrisii
ENSPNYG00000016731	-	100	95.459	ENSSFOG00015021095	upf1	100	95.459	Scleropages_formosus
ENSPNYG00000016731	-	100	91.039	ENSSMAG00000005055	upf1	100	91.756	Scophthalmus_maximus
ENSPNYG00000016731	-	100	98.730	ENSSMAG00000021018	-	100	98.730	Scophthalmus_maximus
ENSPNYG00000016731	-	100	91.860	ENSSDUG00000013320	upf1	100	92.487	Seriola_dumerili
ENSPNYG00000016731	-	100	99.093	ENSSDUG00000009629	-	100	99.093	Seriola_dumerili
ENSPNYG00000016731	-	100	92.690	ENSSLDG00000020868	upf1	100	92.979	Seriola_lalandi_dorsalis
ENSPNYG00000016731	-	100	99.093	ENSSLDG00000006878	-	100	99.093	Seriola_lalandi_dorsalis
ENSPNYG00000016731	-	100	92.806	ENSSPUG00000010538	UPF1	100	92.896	Sphenodon_punctatus
ENSPNYG00000016731	-	100	98.730	ENSSPAG00000011521	-	100	98.730	Stegastes_partitus
ENSPNYG00000016731	-	100	90.761	ENSSPAG00000000003	upf1	100	90.645	Stegastes_partitus
ENSPNYG00000016731	-	100	92.487	ENSSSCG00000039301	UPF1	99	94.444	Sus_scrofa
ENSPNYG00000016731	-	82	86.809	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSPNYG00000016731	-	100	92.468	ENSTRUG00000000150	upf1	100	92.468	Takifugu_rubripes
ENSPNYG00000016731	-	100	96.824	ENSTRUG00000005131	-	100	96.824	Takifugu_rubripes
ENSPNYG00000016731	-	100	88.909	ENSTTRG00000011544	UPF1	100	88.909	Tursiops_truncatus
ENSPNYG00000016731	-	100	92.239	ENSUAMG00000007093	UPF1	100	92.328	Ursus_americanus
ENSPNYG00000016731	-	95	94.444	ENSUMAG00000006652	UPF1	99	94.928	Ursus_maritimus
ENSPNYG00000016731	-	100	92.328	ENSVVUG00000007797	UPF1	100	92.417	Vulpes_vulpes
ENSPNYG00000016731	-	100	79.383	ENSXETG00000013602	upf1	100	79.383	Xenopus_tropicalis
ENSPNYG00000016731	-	97	91.541	ENSXCOG00000015275	-	96	91.447	Xiphophorus_couchianus
ENSPNYG00000016731	-	94	97.967	ENSXCOG00000005764	-	100	97.967	Xiphophorus_couchianus
ENSPNYG00000016731	-	100	98.004	ENSXMAG00000002540	-	100	98.004	Xiphophorus_maculatus
ENSPNYG00000016731	-	100	91.735	ENSXMAG00000001703	-	100	91.644	Xiphophorus_maculatus