EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000017944 (Gene tree)
Gene ID: 102206701
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 11215 bases
Position: chrJH419336.1:1825269-1836483
Accession: 102206701
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000023776	DND1_DSRM	PF14709.7	1.7e-26	1	1
ENSPNYP00000023776	RRM_1	PF00076.22	1.4e-41	1	3
ENSPNYP00000023776	RRM_1	PF00076.22	1.4e-41	2	3
ENSPNYP00000023776	RRM_1	PF00076.22	1.4e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000024359	-	3248	XM_005743439	ENSPNYP00000023776	612 (aa)	XP_005743496	UPI0003AF3B05

Gene Model

Click here to download ENSPNYG00000017944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000017944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000017944	a1cf	87	52.060	ENSPNYG00000022868	rbm47	75	50.187

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000017944	a1cf	100	77.488	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSPNYG00000017944	a1cf	100	84.505	ENSAPOG00000008259	a1cf	100	83.546	Acanthochromis_polyacanthus
ENSPNYG00000017944	a1cf	100	77.362	ENSAMEG00000000523	A1CF	100	75.204	Ailuropoda_melanoleuca
ENSPNYG00000017944	a1cf	100	94.444	ENSACIG00000008632	a1cf	100	94.444	Amphilophus_citrinellus
ENSPNYG00000017944	a1cf	100	86.016	ENSAOCG00000023744	a1cf	97	90.883	Amphiprion_ocellaris
ENSPNYG00000017944	a1cf	100	87.317	ENSAPEG00000009537	a1cf	100	87.317	Amphiprion_percula
ENSPNYG00000017944	a1cf	100	90.407	ENSATEG00000013720	a1cf	100	89.431	Anabas_testudineus
ENSPNYG00000017944	a1cf	100	78.467	ENSAPLG00000002964	A1CF	100	76.346	Anas_platyrhynchos
ENSPNYG00000017944	a1cf	100	76.672	ENSACAG00000015269	A1CF	100	74.878	Anolis_carolinensis
ENSPNYG00000017944	a1cf	100	76.835	ENSANAG00000019974	A1CF	100	74.878	Aotus_nancymaae
ENSPNYG00000017944	a1cf	100	95.098	ENSACLG00000017428	a1cf	100	95.098	Astatotilapia_calliptera
ENSPNYG00000017944	a1cf	100	76.823	ENSAMXG00000018180	a1cf	100	76.214	Astyanax_mexicanus
ENSPNYG00000017944	a1cf	100	76.998	ENSBTAG00000021195	A1CF	100	76.732	Bos_taurus
ENSPNYG00000017944	a1cf	100	77.814	ENSCJAG00000005045	A1CF	100	75.856	Callithrix_jacchus
ENSPNYG00000017944	a1cf	100	77.325	ENSCAFG00000015581	A1CF	100	75.693	Canis_familiaris
ENSPNYG00000017944	a1cf	100	77.325	ENSCAFG00020026421	A1CF	98	82.609	Canis_lupus_dingo
ENSPNYG00000017944	a1cf	100	78.630	ENSCHIG00000020411	A1CF	100	76.835	Capra_hircus
ENSPNYG00000017944	a1cf	94	77.720	ENSTSYG00000001755	A1CF	100	74.266	Carlito_syrichta
ENSPNYG00000017944	a1cf	100	73.761	ENSCAPG00000017386	A1CF	100	76.038	Cavia_aperea
ENSPNYG00000017944	a1cf	100	76.672	ENSCPOG00000009807	A1CF	100	74.225	Cavia_porcellus
ENSPNYG00000017944	a1cf	100	77.651	ENSCCAG00000018168	A1CF	100	75.530	Cebus_capucinus
ENSPNYG00000017944	a1cf	100	76.183	ENSCATG00000043715	A1CF	100	74.878	Cercocebus_atys
ENSPNYG00000017944	a1cf	100	76.672	ENSCLAG00000010424	A1CF	100	74.715	Chinchilla_lanigera
ENSPNYG00000017944	a1cf	100	77.651	ENSCSAG00000007032	A1CF	100	76.346	Chlorocebus_sabaeus
ENSPNYG00000017944	a1cf	98	73.597	ENSCHOG00000009089	A1CF	98	71.617	Choloepus_hoffmanni
ENSPNYG00000017944	a1cf	100	77.977	ENSCPBG00000026464	A1CF	100	76.020	Chrysemys_picta_bellii
ENSPNYG00000017944	a1cf	100	77.488	ENSCANG00000038032	A1CF	100	76.183	Colobus_angolensis_palliatus
ENSPNYG00000017944	a1cf	100	76.672	ENSCGRG00001017413	A1cf	100	74.878	Cricetulus_griseus_chok1gshd
ENSPNYG00000017944	a1cf	100	75.935	ENSCGRG00000017332	A1cf	100	74.388	Cricetulus_griseus_crigri
ENSPNYG00000017944	a1cf	100	87.500	ENSCSEG00000002361	a1cf	100	88.149	Cynoglossus_semilaevis
ENSPNYG00000017944	a1cf	100	88.455	ENSCVAG00000010520	a1cf	100	88.293	Cyprinodon_variegatus
ENSPNYG00000017944	a1cf	100	81.729	ENSDARG00000002968	a1cf	100	80.914	Danio_rerio
ENSPNYG00000017944	a1cf	100	77.162	ENSDNOG00000002829	A1CF	100	75.204	Dasypus_novemcinctus
ENSPNYG00000017944	a1cf	81	85.507	ENSETEG00000012527	A1CF	81	85.507	Echinops_telfairi
ENSPNYG00000017944	a1cf	100	77.850	ENSEASG00005012924	A1CF	100	76.059	Equus_asinus_asinus
ENSPNYG00000017944	a1cf	100	77.362	ENSECAG00000010424	A1CF	100	75.570	Equus_caballus
ENSPNYG00000017944	a1cf	79	67.081	ENSEEUG00000000013	A1CF	97	65.451	Erinaceus_europaeus
ENSPNYG00000017944	a1cf	100	82.382	ENSELUG00000003159	a1cf	100	81.566	Esox_lucius
ENSPNYG00000017944	a1cf	100	75.367	ENSFCAG00000011179	A1CF	100	74.225	Felis_catus
ENSPNYG00000017944	a1cf	100	77.814	ENSFALG00000013183	A1CF	100	76.020	Ficedula_albicollis
ENSPNYG00000017944	a1cf	100	75.367	ENSFDAG00000019371	A1CF	100	73.409	Fukomys_damarensis
ENSPNYG00000017944	a1cf	100	82.927	ENSFHEG00000019652	a1cf	96	92.188	Fundulus_heteroclitus
ENSPNYG00000017944	a1cf	100	78.374	ENSGMOG00000018943	a1cf	100	77.398	Gadus_morhua
ENSPNYG00000017944	a1cf	95	78.621	ENSGALG00000003765	A1CF	96	76.724	Gallus_gallus
ENSPNYG00000017944	a1cf	100	81.626	ENSGAFG00000014868	a1cf	100	80.488	Gambusia_affinis
ENSPNYG00000017944	a1cf	100	87.642	ENSGACG00000010241	a1cf	100	86.504	Gasterosteus_aculeatus
ENSPNYG00000017944	a1cf	96	76.871	ENSGAGG00000016508	A1CF	98	74.830	Gopherus_agassizii
ENSPNYG00000017944	a1cf	100	77.488	ENSGGOG00000009670	A1CF	100	75.530	Gorilla_gorilla
ENSPNYG00000017944	a1cf	100	98.366	ENSHBUG00000021959	a1cf	100	98.366	Haplochromis_burtoni
ENSPNYG00000017944	a1cf	100	76.672	ENSHGLG00000008955	A1CF	100	75.041	Heterocephalus_glaber_female
ENSPNYG00000017944	a1cf	100	76.020	ENSHGLG00100000518	A1CF	100	74.388	Heterocephalus_glaber_male
ENSPNYG00000017944	a1cf	100	76.565	ENSHCOG00000017669	a1cf	100	77.849	Hippocampus_comes
ENSPNYG00000017944	a1cf	90	85.246	ENSIPUG00000010367	a1cf	96	84.335	Ictalurus_punctatus
ENSPNYG00000017944	a1cf	100	89.482	ENSKMAG00000006568	a1cf	100	88.026	Kryptolebias_marmoratus
ENSPNYG00000017944	a1cf	99	90.244	ENSLBEG00000020994	a1cf	99	89.106	Labrus_bergylta
ENSPNYG00000017944	a1cf	100	78.303	ENSLACG00000008061	A1CF	100	76.672	Latimeria_chalumnae
ENSPNYG00000017944	a1cf	100	82.382	ENSLOCG00000006302	a1cf	100	79.935	Lepisosteus_oculatus
ENSPNYG00000017944	a1cf	100	77.488	ENSLAFG00000015462	A1CF	100	77.162	Loxodonta_africana
ENSPNYG00000017944	a1cf	100	76.346	ENSMFAG00000035948	A1CF	100	75.041	Macaca_fascicularis
ENSPNYG00000017944	a1cf	100	76.346	ENSMMUG00000007077	A1CF	100	75.041	Macaca_mulatta
ENSPNYG00000017944	a1cf	100	76.183	ENSMNEG00000031454	A1CF	100	74.878	Macaca_nemestrina
ENSPNYG00000017944	a1cf	100	77.325	ENSMLEG00000037223	A1CF	100	76.020	Mandrillus_leucophaeus
ENSPNYG00000017944	a1cf	100	88.961	ENSMAMG00000010402	a1cf	100	87.662	Mastacembelus_armatus
ENSPNYG00000017944	a1cf	100	94.608	ENSMZEG00005013245	a1cf	100	94.608	Maylandia_zebra
ENSPNYG00000017944	a1cf	100	78.013	ENSMGAG00000001507	A1CF	100	76.221	Meleagris_gallopavo
ENSPNYG00000017944	a1cf	100	76.346	ENSMAUG00000007422	A1cf	100	74.715	Mesocricetus_auratus
ENSPNYG00000017944	a1cf	100	75.772	ENSMICG00000003377	A1CF	100	75.610	Microcebus_murinus
ENSPNYG00000017944	a1cf	100	77.325	ENSMOCG00000021536	A1cf	100	75.367	Microtus_ochrogaster
ENSPNYG00000017944	a1cf	100	78.374	ENSMMOG00000009422	a1cf	100	77.886	Mola_mola
ENSPNYG00000017944	a1cf	89	78.493	ENSMODG00000016478	A1CF	97	76.838	Monodelphis_domestica
ENSPNYG00000017944	a1cf	100	80.719	ENSMALG00000012992	a1cf	100	80.556	Monopterus_albus
ENSPNYG00000017944	a1cf	100	76.509	MGP_CAROLIEiJ_G0022873	A1cf	100	74.551	Mus_caroli
ENSPNYG00000017944	a1cf	100	76.509	ENSMUSG00000052595	A1cf	99	82.292	Mus_musculus
ENSPNYG00000017944	a1cf	100	75.856	MGP_PahariEiJ_G0014366	A1cf	100	73.899	Mus_pahari
ENSPNYG00000017944	a1cf	100	77.036	MGP_SPRETEiJ_G0023792	A1cf	100	75.081	Mus_spretus
ENSPNYG00000017944	a1cf	100	71.615	ENSMPUG00000016971	A1CF	100	69.984	Mustela_putorius_furo
ENSPNYG00000017944	a1cf	100	77.561	ENSMLUG00000016071	A1CF	100	76.020	Myotis_lucifugus
ENSPNYG00000017944	a1cf	100	77.325	ENSNGAG00000015136	A1cf	100	75.367	Nannospalax_galili
ENSPNYG00000017944	a1cf	100	98.203	ENSNBRG00000001712	a1cf	100	98.203	Neolamprologus_brichardi
ENSPNYG00000017944	a1cf	100	77.977	ENSNLEG00000012028	A1CF	100	76.020	Nomascus_leucogenys
ENSPNYG00000017944	a1cf	94	76.684	ENSMEUG00000015909	A1CF	100	75.130	Notamacropus_eugenii
ENSPNYG00000017944	a1cf	88	70.185	ENSOPRG00000010667	A1CF	100	66.904	Ochotona_princeps
ENSPNYG00000017944	a1cf	100	97.876	ENSONIG00000019105	a1cf	100	97.876	Oreochromis_niloticus
ENSPNYG00000017944	a1cf	78	76.349	ENSOANG00000007360	A1CF	99	75.104	Ornithorhynchus_anatinus
ENSPNYG00000017944	a1cf	100	75.856	ENSOCUG00000011587	A1CF	100	73.899	Oryctolagus_cuniculus
ENSPNYG00000017944	a1cf	100	85.366	ENSORLG00000013342	a1cf	100	84.390	Oryzias_latipes
ENSPNYG00000017944	a1cf	100	87.338	ENSORLG00020000586	a1cf	100	86.688	Oryzias_latipes_hni
ENSPNYG00000017944	a1cf	100	87.338	ENSORLG00015018569	a1cf	100	86.688	Oryzias_latipes_hsok
ENSPNYG00000017944	a1cf	100	86.667	ENSOMEG00000013531	a1cf	100	85.366	Oryzias_melastigma
ENSPNYG00000017944	a1cf	100	76.346	ENSOGAG00000012884	A1CF	100	75.367	Otolemur_garnettii
ENSPNYG00000017944	a1cf	100	78.303	ENSOARG00000013695	A1CF	100	76.509	Ovis_aries
ENSPNYG00000017944	a1cf	97	76.431	ENSPPAG00000028115	A1CF	99	78.978	Pan_paniscus
ENSPNYG00000017944	a1cf	100	76.509	ENSPPRG00000012180	A1CF	100	75.367	Panthera_pardus
ENSPNYG00000017944	a1cf	100	76.509	ENSPTIG00000021223	A1CF	100	75.367	Panthera_tigris_altaica
ENSPNYG00000017944	a1cf	100	77.488	ENSPTRG00000002508	A1CF	100	75.530	Pan_troglodytes
ENSPNYG00000017944	a1cf	100	76.346	ENSPANG00000021988	A1CF	100	75.041	Papio_anubis
ENSPNYG00000017944	a1cf	100	82.055	ENSPKIG00000025176	a1cf	100	81.566	Paramormyrops_kingsleyae
ENSPNYG00000017944	a1cf	100	76.835	ENSPSIG00000010318	A1CF	100	75.204	Pelodiscus_sinensis
ENSPNYG00000017944	a1cf	98	70.432	ENSPMGG00000013359	a1cf	99	71.808	Periophthalmus_magnuspinnatus
ENSPNYG00000017944	a1cf	100	76.835	ENSPEMG00000015021	A1cf	100	74.878	Peromyscus_maniculatus_bairdii
ENSPNYG00000017944	a1cf	100	75.856	ENSPCIG00000002175	A1CF	100	75.530	Phascolarctos_cinereus
ENSPNYG00000017944	a1cf	100	89.431	ENSPFOG00000006683	a1cf	100	89.268	Poecilia_formosa
ENSPNYG00000017944	a1cf	100	89.431	ENSPFOG00000007437	-	100	89.268	Poecilia_formosa
ENSPNYG00000017944	a1cf	100	88.293	ENSPLAG00000001210	-	100	88.130	Poecilia_latipinna
ENSPNYG00000017944	a1cf	100	88.293	ENSPLAG00000000026	a1cf	100	88.130	Poecilia_latipinna
ENSPNYG00000017944	a1cf	100	80.229	ENSPMEG00000000921	a1cf	100	80.065	Poecilia_mexicana
ENSPNYG00000017944	a1cf	100	81.536	ENSPMEG00000015529	-	100	81.373	Poecilia_mexicana
ENSPNYG00000017944	a1cf	100	89.106	ENSPREG00000016298	a1cf	100	88.943	Poecilia_reticulata
ENSPNYG00000017944	a1cf	100	76.835	ENSPPYG00000002819	A1CF	100	74.878	Pongo_abelii
ENSPNYG00000017944	a1cf	80	59.592	ENSPCAG00000006463	A1CF	79	59.146	Procavia_capensis
ENSPNYG00000017944	a1cf	100	76.835	ENSPCOG00000024172	A1CF	100	76.509	Propithecus_coquereli
ENSPNYG00000017944	a1cf	100	83.604	ENSPNAG00000007704	a1cf	100	82.764	Pygocentrus_nattereri
ENSPNYG00000017944	a1cf	100	76.183	ENSRNOG00000033195	A1cf	100	74.225	Rattus_norvegicus
ENSPNYG00000017944	a1cf	100	72.195	ENSRBIG00000042892	A1CF	100	72.727	Rhinopithecus_bieti
ENSPNYG00000017944	a1cf	100	77.488	ENSRROG00000041398	A1CF	100	76.183	Rhinopithecus_roxellana
ENSPNYG00000017944	a1cf	100	78.303	ENSSBOG00000021930	A1CF	100	76.346	Saimiri_boliviensis_boliviensis
ENSPNYG00000017944	a1cf	100	77.977	ENSSHAG00000005096	A1CF	100	76.020	Sarcophilus_harrisii
ENSPNYG00000017944	a1cf	100	83.089	ENSSFOG00015011774	a1cf	100	82.439	Scleropages_formosus
ENSPNYG00000017944	a1cf	100	91.354	ENSSMAG00000013271	a1cf	100	89.560	Scophthalmus_maximus
ENSPNYG00000017944	a1cf	100	90.407	ENSSDUG00000013930	a1cf	100	89.919	Seriola_dumerili
ENSPNYG00000017944	a1cf	100	82.680	ENSSLDG00000004290	a1cf	100	83.007	Seriola_lalandi_dorsalis
ENSPNYG00000017944	a1cf	95	68.900	ENSSARG00000005940	A1CF	95	68.557	Sorex_araneus
ENSPNYG00000017944	a1cf	97	74.832	ENSSPUG00000006797	A1CF	95	73.595	Sphenodon_punctatus
ENSPNYG00000017944	a1cf	100	78.956	ENSSSCG00000010431	A1CF	100	77.162	Sus_scrofa
ENSPNYG00000017944	a1cf	100	78.827	ENSTGUG00000005090	A1CF	100	76.710	Taeniopygia_guttata
ENSPNYG00000017944	a1cf	100	87.662	ENSTRUG00000001982	a1cf	100	86.364	Takifugu_rubripes
ENSPNYG00000017944	a1cf	100	87.682	ENSTNIG00000003580	a1cf	100	86.224	Tetraodon_nigroviridis
ENSPNYG00000017944	a1cf	97	71.886	ENSTTRG00000013190	A1CF	95	70.202	Tursiops_truncatus
ENSPNYG00000017944	a1cf	100	76.183	ENSUAMG00000020065	A1CF	100	74.062	Ursus_americanus
ENSPNYG00000017944	a1cf	100	76.835	ENSUMAG00000011162	A1CF	100	74.878	Ursus_maritimus
ENSPNYG00000017944	a1cf	87	74.115	ENSVPAG00000006130	A1CF	86	71.881	Vicugna_pacos
ENSPNYG00000017944	a1cf	100	76.346	ENSVVUG00000002504	A1CF	100	74.715	Vulpes_vulpes
ENSPNYG00000017944	a1cf	100	71.615	ENSXETG00000006611	a1cf	100	70.799	Xenopus_tropicalis
ENSPNYG00000017944	a1cf	100	89.431	ENSXCOG00000003302	a1cf	100	87.967	Xiphophorus_couchianus
ENSPNYG00000017944	a1cf	100	90.732	ENSXMAG00000016703	a1cf	100	89.268	Xiphophorus_maculatus