EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000019727 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 10484 bases
Position: chrJH419383.1:928167-938650
Accession: 102197801
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000026223	RRM_1	PF00076.22	7.1e-17	1	1
ENSPNYP00000026289	RRM_1	PF00076.22	2.7e-16	1	1
ENSPNYP00000026260	RRM_1	PF00076.22	2.7e-16	1	1
ENSPNYP00000026278	RRM_1	PF00076.22	2.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000026900	-	717	-	ENSPNYP00000026260	238 (aa)	-	-
ENSPNYT00000026862	-	354	-	ENSPNYP00000026223	117 (aa)	-	-
ENSPNYT00000026919	-	735	XM_005746436	ENSPNYP00000026278	244 (aa)	XP_005746493	UPI0003297CF7
ENSPNYT00000026930	-	723	-	ENSPNYP00000026289	240 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000019727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000019727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000019727	-	91	37.662	ENSPNYG00000008424	hnrnpa3	74	38.158
ENSPNYG00000019727	-	64	41.333	ENSPNYG00000020763	-	71	41.333
ENSPNYG00000019727	-	100	81.197	ENSPNYG00000015684	rbm24b	100	61.345
ENSPNYG00000019727	-	83	34.483	ENSPNYG00000017318	dazap1	50	35.294
ENSPNYG00000019727	-	73	40.678	ENSPNYG00000018393	msi2a	51	37.647
ENSPNYG00000019727	-	100	82.906	ENSPNYG00000021373	rbm38	98	63.745
ENSPNYG00000019727	-	72	36.765	ENSPNYG00000013003	-	50	36.765
ENSPNYG00000019727	-	91	38.667	ENSPNYG00000020729	-	86	38.667
ENSPNYG00000019727	-	61	47.458	ENSPNYG00000017019	hnrnpa1b	69	39.706
ENSPNYG00000019727	-	100	81.197	ENSPNYG00000011118	rbm24a	100	60.759

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000019727	-	100	89.744	ENSG00000132819	RBM38	94	89.744	Homo_sapiens
ENSPNYG00000019727	-	100	96.610	ENSAPOG00000009939	-	100	91.393	Acanthochromis_polyacanthus
ENSPNYG00000019727	-	100	84.615	ENSAPOG00000003301	rbm38	98	64.567	Acanthochromis_polyacanthus
ENSPNYG00000019727	-	100	83.761	ENSACIG00000000010	rbm38	98	64.143	Amphilophus_citrinellus
ENSPNYG00000019727	-	100	99.145	ENSACIG00000012502	-	100	99.145	Amphilophus_citrinellus
ENSPNYG00000019727	-	100	84.615	ENSAOCG00000013497	-	98	64.567	Amphiprion_ocellaris
ENSPNYG00000019727	-	100	96.610	ENSAOCG00000012559	RBM38	100	90.295	Amphiprion_ocellaris
ENSPNYG00000019727	-	100	96.610	ENSAPEG00000023581	-	100	90.164	Amphiprion_percula
ENSPNYG00000019727	-	100	84.615	ENSAPEG00000013137	rbm38	98	64.567	Amphiprion_percula
ENSPNYG00000019727	-	100	95.763	ENSATEG00000016710	-	100	93.443	Anabas_testudineus
ENSPNYG00000019727	-	100	83.761	ENSATEG00000016366	rbm38	96	66.520	Anabas_testudineus
ENSPNYG00000019727	-	100	83.761	ENSACAG00000016238	RBM38	90	67.521	Anolis_carolinensis
ENSPNYG00000019727	-	100	89.744	ENSANAG00000031959	RBM38	81	93.939	Aotus_nancymaae
ENSPNYG00000019727	-	100	100.000	ENSACLG00000019514	-	100	100.000	Astatotilapia_calliptera
ENSPNYG00000019727	-	93	83.486	ENSAMXG00000038120	rbm38	97	65.812	Astyanax_mexicanus
ENSPNYG00000019727	-	100	94.915	ENSAMXG00000015601	-	100	79.098	Astyanax_mexicanus
ENSPNYG00000019727	-	100	88.034	ENSBTAG00000008105	RBM38	89	70.046	Bos_taurus
ENSPNYG00000019727	-	76	83.146	WBGene00006321	sup-12	59	83.146	Caenorhabditis_elegans
ENSPNYG00000019727	-	100	90.598	ENSCJAG00000019139	RBM38	81	93.939	Callithrix_jacchus
ENSPNYG00000019727	-	100	88.889	ENSCAFG00020021943	RBM38	89	72.018	Canis_lupus_dingo
ENSPNYG00000019727	-	100	87.179	ENSCHIG00000002609	RBM38	89	69.585	Capra_hircus
ENSPNYG00000019727	-	100	88.889	ENSCPOG00000012781	RBM38	89	70.642	Cavia_porcellus
ENSPNYG00000019727	-	100	90.598	ENSCCAG00000036872	RBM38	81	93.939	Cebus_capucinus
ENSPNYG00000019727	-	100	89.744	ENSCATG00000032133	RBM38	81	93.939	Cercocebus_atys
ENSPNYG00000019727	-	100	88.889	ENSCLAG00000005906	RBM38	92	69.725	Chinchilla_lanigera
ENSPNYG00000019727	-	100	89.744	ENSCSAG00000015503	RBM38	89	70.642	Chlorocebus_sabaeus
ENSPNYG00000019727	-	100	86.325	ENSCPBG00000024059	RBM38	100	70.270	Chrysemys_picta_bellii
ENSPNYG00000019727	-	96	76.991	ENSCING00000025102	-	96	50.220	Ciona_intestinalis
ENSPNYG00000019727	-	96	75.439	ENSCSAVG00000001132	-	57	62.987	Ciona_savignyi
ENSPNYG00000019727	-	96	67.857	ENSCANG00000030105	-	80	51.802	Colobus_angolensis_palliatus
ENSPNYG00000019727	-	100	88.034	ENSCGRG00001012928	Rbm38	89	68.349	Cricetulus_griseus_chok1gshd
ENSPNYG00000019727	-	100	93.220	ENSCSEG00000004701	-	100	89.344	Cynoglossus_semilaevis
ENSPNYG00000019727	-	100	75.214	ENSCSEG00000020943	rbm38	63	64.062	Cynoglossus_semilaevis
ENSPNYG00000019727	-	100	80.342	ENSCVAG00000015952	rbm38	98	61.811	Cyprinodon_variegatus
ENSPNYG00000019727	-	100	92.000	ENSCVAG00000005472	-	100	88.115	Cyprinodon_variegatus
ENSPNYG00000019727	-	100	87.179	ENSDARG00000058818	rbm38	100	71.255	Danio_rerio
ENSPNYG00000019727	-	100	88.034	ENSDNOG00000032004	RBM38	98	69.767	Dasypus_novemcinctus
ENSPNYG00000019727	-	85	83.838	ENSEBUG00000015164	rbm38	62	82.353	Eptatretus_burgeri
ENSPNYG00000019727	-	100	87.179	ENSECAG00000007700	RBM38	89	69.585	Equus_caballus
ENSPNYG00000019727	-	100	88.034	ENSEEUG00000013489	RBM38	89	69.863	Erinaceus_europaeus
ENSPNYG00000019727	-	100	88.889	ENSELUG00000000585	-	98	63.319	Esox_lucius
ENSPNYG00000019727	-	100	91.870	ENSELUG00000005849	-	100	80.723	Esox_lucius
ENSPNYG00000019727	-	100	88.889	ENSFCAG00000042916	RBM38	81	92.929	Felis_catus
ENSPNYG00000019727	-	100	85.470	ENSFALG00000010805	RBM38	95	70.811	Ficedula_albicollis
ENSPNYG00000019727	-	100	80.342	ENSFHEG00000017748	rbm38	98	61.417	Fundulus_heteroclitus
ENSPNYG00000019727	-	100	91.200	ENSFHEG00000006160	-	100	84.677	Fundulus_heteroclitus
ENSPNYG00000019727	-	100	94.872	ENSGMOG00000016655	-	98	85.326	Gadus_morhua
ENSPNYG00000019727	-	100	85.470	ENSGALG00000026081	RBM38	100	69.369	Gallus_gallus
ENSPNYG00000019727	-	100	92.373	ENSGACG00000009873	-	100	88.940	Gasterosteus_aculeatus
ENSPNYG00000019727	-	100	83.761	ENSGACG00000015224	rbm38	100	69.863	Gasterosteus_aculeatus
ENSPNYG00000019727	-	100	86.325	ENSGAGG00000001187	RBM38	100	70.270	Gopherus_agassizii
ENSPNYG00000019727	-	100	100.000	ENSHBUG00000011778	-	100	100.000	Haplochromis_burtoni
ENSPNYG00000019727	-	100	83.761	ENSHBUG00000012058	rbm38	98	64.143	Haplochromis_burtoni
ENSPNYG00000019727	-	100	88.889	ENSHGLG00000015077	RBM38	89	69.725	Heterocephalus_glaber_female
ENSPNYG00000019727	-	98	73.913	ENSHCOG00000019040	rbm38	86	54.419	Hippocampus_comes
ENSPNYG00000019727	-	97	96.491	ENSHCOG00000005622	-	59	91.262	Hippocampus_comes
ENSPNYG00000019727	-	100	92.373	ENSIPUG00000019349	-	100	72.245	Ictalurus_punctatus
ENSPNYG00000019727	-	91	78.302	ENSKMAG00000012402	rbm38	98	59.657	Kryptolebias_marmoratus
ENSPNYG00000019727	-	100	84.615	ENSLBEG00000018878	rbm38	98	63.889	Labrus_bergylta
ENSPNYG00000019727	-	100	97.458	ENSLBEG00000016163	RBM38	100	89.919	Labrus_bergylta
ENSPNYG00000019727	-	100	90.598	ENSLOCG00000003456	rbm38	100	74.590	Lepisosteus_oculatus
ENSPNYG00000019727	-	100	89.744	ENSMFAG00000043808	RBM38	81	93.939	Macaca_fascicularis
ENSPNYG00000019727	-	100	89.744	ENSMMUG00000031391	RBM38	81	93.939	Macaca_mulatta
ENSPNYG00000019727	-	100	89.744	ENSMNEG00000034683	RBM38	81	93.939	Macaca_nemestrina
ENSPNYG00000019727	-	95	74.775	ENSMLEG00000043261	-	90	74.775	Mandrillus_leucophaeus
ENSPNYG00000019727	-	100	96.610	ENSMAMG00000020499	RBM38	100	90.574	Mastacembelus_armatus
ENSPNYG00000019727	-	100	83.761	ENSMAMG00000024135	rbm38	98	64.940	Mastacembelus_armatus
ENSPNYG00000019727	-	100	83.761	ENSMZEG00005026036	rbm38	98	64.143	Maylandia_zebra
ENSPNYG00000019727	-	100	100.000	ENSMZEG00005000849	-	100	100.000	Maylandia_zebra
ENSPNYG00000019727	-	100	88.889	ENSMAUG00000021211	Rbm38	89	69.725	Mesocricetus_auratus
ENSPNYG00000019727	-	100	89.744	ENSMICG00000038011	RBM38	98	70.776	Microcebus_murinus
ENSPNYG00000019727	-	100	88.034	ENSMOCG00000008715	Rbm38	89	69.266	Microtus_ochrogaster
ENSPNYG00000019727	-	100	96.610	ENSMMOG00000020051	-	100	92.213	Mola_mola
ENSPNYG00000019727	-	100	86.325	ENSMODG00000016458	RBM38	92	69.369	Monodelphis_domestica
ENSPNYG00000019727	-	97	80.531	ENSMALG00000022327	rbm38	98	56.800	Monopterus_albus
ENSPNYG00000019727	-	100	97.458	ENSMALG00000004680	RBM38	72	96.296	Monopterus_albus
ENSPNYG00000019727	-	100	88.034	MGP_CAROLIEiJ_G0024745	Rbm38	89	69.725	Mus_caroli
ENSPNYG00000019727	-	100	88.034	ENSMUSG00000027510	Rbm38	89	69.725	Mus_musculus
ENSPNYG00000019727	-	100	88.034	MGP_PahariEiJ_G0026186	Rbm38	89	69.725	Mus_pahari
ENSPNYG00000019727	-	100	88.034	MGP_SPRETEiJ_G0025665	Rbm38	89	69.725	Mus_spretus
ENSPNYG00000019727	-	100	88.889	ENSMPUG00000006518	RBM38	92	75.000	Mustela_putorius_furo
ENSPNYG00000019727	-	100	87.179	ENSMLUG00000011140	RBM38	98	69.585	Myotis_lucifugus
ENSPNYG00000019727	-	100	99.590	ENSNBRG00000022545	-	100	99.590	Neolamprologus_brichardi
ENSPNYG00000019727	-	100	84.615	ENSNBRG00000022685	rbm38	98	64.542	Neolamprologus_brichardi
ENSPNYG00000019727	-	99	79.310	ENSMEUG00000005475	-	86	79.310	Notamacropus_eugenii
ENSPNYG00000019727	-	100	88.889	ENSODEG00000007980	RBM38	89	70.183	Octodon_degus
ENSPNYG00000019727	-	99	99.588	ENSONIG00000020324	-	100	99.588	Oreochromis_niloticus
ENSPNYG00000019727	-	100	83.761	ENSONIG00000017073	rbm38	100	64.400	Oreochromis_niloticus
ENSPNYG00000019727	-	100	84.615	ENSOANG00000009259	RBM38	83	68.778	Ornithorhynchus_anatinus
ENSPNYG00000019727	-	100	80.342	ENSORLG00000012154	rbm38	98	59.216	Oryzias_latipes
ENSPNYG00000019727	-	100	95.763	ENSORLG00000027180	-	100	90.244	Oryzias_latipes
ENSPNYG00000019727	-	100	95.763	ENSORLG00020020751	-	100	90.244	Oryzias_latipes_hni
ENSPNYG00000019727	-	100	81.197	ENSORLG00020017871	rbm38	98	59.216	Oryzias_latipes_hni
ENSPNYG00000019727	-	100	81.197	ENSORLG00015012606	rbm38	98	59.216	Oryzias_latipes_hsok
ENSPNYG00000019727	-	100	95.763	ENSORLG00015017040	-	100	91.020	Oryzias_latipes_hsok
ENSPNYG00000019727	-	100	95.763	ENSOMEG00000023912	-	100	90.574	Oryzias_melastigma
ENSPNYG00000019727	-	100	82.051	ENSOMEG00000006805	rbm38	98	60.870	Oryzias_melastigma
ENSPNYG00000019727	-	100	89.744	ENSOGAG00000029136	RBM38	88	71.101	Otolemur_garnettii
ENSPNYG00000019727	-	100	88.889	ENSPPRG00000009507	RBM38	81	92.929	Panthera_pardus
ENSPNYG00000019727	-	100	89.744	ENSPTRG00000045845	-	64	89.744	Pan_troglodytes
ENSPNYG00000019727	-	100	89.744	ENSPTRG00000013661	RBM38	81	93.939	Pan_troglodytes
ENSPNYG00000019727	-	100	89.744	ENSPANG00000020919	-	81	93.939	Papio_anubis
ENSPNYG00000019727	-	92	72.222	ENSPANG00000033127	-	91	55.505	Papio_anubis
ENSPNYG00000019727	-	100	89.744	ENSPKIG00000018122	-	100	89.744	Paramormyrops_kingsleyae
ENSPNYG00000019727	-	100	86.066	ENSPKIG00000025417	rbm38	100	71.200	Paramormyrops_kingsleyae
ENSPNYG00000019727	-	100	85.470	ENSPSIG00000011649	RBM38	94	69.027	Pelodiscus_sinensis
ENSPNYG00000019727	-	100	84.615	ENSPMGG00000011343	rbm38	98	62.000	Periophthalmus_magnuspinnatus
ENSPNYG00000019727	-	97	87.826	ENSPMGG00000017094	-	100	85.081	Periophthalmus_magnuspinnatus
ENSPNYG00000019727	-	100	86.325	ENSPCIG00000013648	RBM38	92	68.468	Phascolarctos_cinereus
ENSPNYG00000019727	-	100	81.197	ENSPFOG00000011658	rbm38	98	60.700	Poecilia_formosa
ENSPNYG00000019727	-	100	81.197	ENSPLAG00000005218	rbm38	98	60.700	Poecilia_latipinna
ENSPNYG00000019727	-	100	92.000	ENSPLAG00000002500	-	100	87.805	Poecilia_latipinna
ENSPNYG00000019727	-	100	81.197	ENSPMEG00000015770	rbm38	98	59.690	Poecilia_mexicana
ENSPNYG00000019727	-	100	81.197	ENSPREG00000007398	rbm38	98	60.700	Poecilia_reticulata
ENSPNYG00000019727	-	100	88.889	ENSPCOG00000026201	RBM38	80	93.939	Propithecus_coquereli
ENSPNYG00000019727	-	71	85.484	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSPNYG00000019727	-	95	91.892	ENSPNAG00000010596	rbm38	88	76.526	Pygocentrus_nattereri
ENSPNYG00000019727	-	100	93.220	ENSPNAG00000015123	-	91	93.162	Pygocentrus_nattereri
ENSPNYG00000019727	-	100	88.034	ENSRNOG00000006420	Rbm38	89	69.863	Rattus_norvegicus
ENSPNYG00000019727	-	96	77.679	ENSRROG00000036388	-	89	55.656	Rhinopithecus_roxellana
ENSPNYG00000019727	-	100	90.598	ENSSBOG00000031053	RBM38	92	93.939	Saimiri_boliviensis_boliviensis
ENSPNYG00000019727	-	96	91.071	ENSSFOG00015004453	rbm38	100	74.089	Scleropages_formosus
ENSPNYG00000019727	-	100	96.610	ENSSDUG00000021082	RBM38	100	91.803	Seriola_dumerili
ENSPNYG00000019727	-	100	84.615	ENSSDUG00000022611	rbm38	98	65.490	Seriola_dumerili
ENSPNYG00000019727	-	100	84.615	ENSSLDG00000010845	rbm38	98	65.490	Seriola_lalandi_dorsalis
ENSPNYG00000019727	-	100	96.610	ENSSLDG00000011778	RBM38	100	92.623	Seriola_lalandi_dorsalis
ENSPNYG00000019727	-	100	84.615	ENSSPAG00000011113	rbm38	98	63.922	Stegastes_partitus
ENSPNYG00000019727	-	100	95.763	ENSSPAG00000020989	RBM38	100	91.803	Stegastes_partitus
ENSPNYG00000019727	-	100	88.889	ENSSSCG00000007504	RBM38	89	70.046	Sus_scrofa
ENSPNYG00000019727	-	100	95.763	ENSTRUG00000019869	-	100	88.163	Takifugu_rubripes
ENSPNYG00000019727	-	100	84.615	ENSTRUG00000024954	rbm38	98	62.857	Takifugu_rubripes
ENSPNYG00000019727	-	100	96.610	ENSTNIG00000007093	-	100	90.498	Tetraodon_nigroviridis
ENSPNYG00000019727	-	100	88.889	ENSUAMG00000019780	RBM38	89	71.689	Ursus_americanus
ENSPNYG00000019727	-	100	88.889	ENSVVUG00000017246	RBM38	89	72.018	Vulpes_vulpes
ENSPNYG00000019727	-	100	85.470	ENSXETG00000011268	rbm38	99	68.000	Xenopus_tropicalis
ENSPNYG00000019727	-	100	88.462	ENSXCOG00000017324	-	68	83.974	Xiphophorus_couchianus
ENSPNYG00000019727	-	100	81.197	ENSXMAG00000023662	rbm38	98	62.205	Xiphophorus_maculatus