EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000020494 (Gene tree)
Gene ID: 102198327
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 7810 bases
Position: chrJH419241.1:3025524-3033333
Accession: 102198327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000027184	RRM_1	PF00076.22	1.5e-57	1	4
ENSPNYP00000027184	RRM_1	PF00076.22	1.5e-57	2	4
ENSPNYP00000027184	RRM_1	PF00076.22	1.5e-57	3	4
ENSPNYP00000027184	RRM_1	PF00076.22	1.5e-57	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000027845	-	3273	XM_005730320	ENSPNYP00000027184	693 (aa)	XP_005730377	UPI0003AFCED8

Gene Model

Click here to download ENSPNYG00000020494's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000020494's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000020494	ncl	55	37.596	ENSPNYG00000000391	-	92	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000020494	ncl	65	79.560	ENSAPOG00000023888	ncl	64	79.560	Acanthochromis_polyacanthus
ENSPNYG00000020494	ncl	58	43.059	ENSAPOG00000014534	-	67	43.081	Acanthochromis_polyacanthus
ENSPNYG00000020494	ncl	70	91.057	ENSACIG00000013234	ncl	62	90.786	Amphilophus_citrinellus
ENSPNYG00000020494	ncl	60	81.280	ENSAOCG00000003133	ncl	60	81.517	Amphiprion_ocellaris
ENSPNYG00000020494	ncl	69	39.604	ENSAOCG00000014792	-	61	42.746	Amphiprion_ocellaris
ENSPNYG00000020494	ncl	69	39.406	ENSAPEG00000013612	-	60	42.487	Amphiprion_percula
ENSPNYG00000020494	ncl	60	81.710	ENSAPEG00000002769	ncl	59	81.710	Amphiprion_percula
ENSPNYG00000020494	ncl	66	79.698	ENSATEG00000013343	ncl	65	78.022	Anabas_testudineus
ENSPNYG00000020494	ncl	61	45.495	ENSATEG00000019862	-	80	47.423	Anabas_testudineus
ENSPNYG00000020494	ncl	83	50.889	ENSACAG00000001006	-	52	62.632	Anolis_carolinensis
ENSPNYG00000020494	ncl	53	95.380	ENSACLG00000026031	ncl	82	95.380	Astatotilapia_calliptera
ENSPNYG00000020494	ncl	58	65.610	ENSAMXG00000001647	ncl	80	69.000	Astyanax_mexicanus
ENSPNYG00000020494	ncl	89	52.000	ENSCPBG00000016444	-	56	62.797	Chrysemys_picta_bellii
ENSPNYG00000020494	ncl	55	73.988	ENSCSEG00000015089	ncl	57	75.532	Cynoglossus_semilaevis
ENSPNYG00000020494	ncl	53	77.657	ENSCVAG00000012600	ncl	61	76.190	Cyprinodon_variegatus
ENSPNYG00000020494	ncl	60	72.813	ENSDARG00000002710	ncl	83	72.923	Danio_rerio
ENSPNYG00000020494	ncl	75	44.529	ENSDNOG00000031611	-	68	44.709	Dasypus_novemcinctus
ENSPNYG00000020494	ncl	58	48.522	ENSELUG00000022826	-	86	48.250	Esox_lucius
ENSPNYG00000020494	ncl	60	70.188	ENSELUG00000006033	ncl	61	69.100	Esox_lucius
ENSPNYG00000020494	ncl	72	58.466	ENSFALG00000007592	-	55	57.963	Ficedula_albicollis
ENSPNYG00000020494	ncl	67	76.757	ENSFHEG00000018000	ncl	72	76.757	Fundulus_heteroclitus
ENSPNYG00000020494	ncl	55	66.667	ENSGMOG00000001341	ncl	59	66.310	Gadus_morhua
ENSPNYG00000020494	ncl	53	59.682	ENSGALG00000032930	NCL	55	59.162	Gallus_gallus
ENSPNYG00000020494	ncl	67	67.391	ENSGAFG00000015375	ncl	50	77.297	Gambusia_affinis
ENSPNYG00000020494	ncl	89	69.280	ENSGACG00000008970	ncl	60	77.419	Gasterosteus_aculeatus
ENSPNYG00000020494	ncl	89	50.077	ENSGAGG00000013330	-	56	61.478	Gopherus_agassizii
ENSPNYG00000020494	ncl	100	98.140	ENSHBUG00000006869	ncl	100	98.140	Haplochromis_burtoni
ENSPNYG00000020494	ncl	69	72.636	ENSHCOG00000010234	ncl	52	76.676	Hippocampus_comes
ENSPNYG00000020494	ncl	53	70.492	ENSIPUG00000024556	ncl	81	70.820	Ictalurus_punctatus
ENSPNYG00000020494	ncl	60	77.619	ENSKMAG00000008111	ncl	53	79.459	Kryptolebias_marmoratus
ENSPNYG00000020494	ncl	56	43.284	ENSLBEG00000007915	-	65	43.194	Labrus_bergylta
ENSPNYG00000020494	ncl	60	80.238	ENSLBEG00000019073	ncl	56	81.183	Labrus_bergylta
ENSPNYG00000020494	ncl	53	42.559	ENSLBEG00000014278	-	81	43.017	Labrus_bergylta
ENSPNYG00000020494	ncl	60	63.033	ENSLACG00000009328	ncl	57	64.362	Latimeria_chalumnae
ENSPNYG00000020494	ncl	58	51.100	ENSLACG00000022167	-	79	52.547	Latimeria_chalumnae
ENSPNYG00000020494	ncl	66	60.554	ENSLOCG00000004828	ncl	63	64.362	Lepisosteus_oculatus
ENSPNYG00000020494	ncl	60	41.458	ENSMAMG00000003479	-	70	42.268	Mastacembelus_armatus
ENSPNYG00000020494	ncl	100	99.425	ENSMZEG00005017438	ncl	100	99.425	Maylandia_zebra
ENSPNYG00000020494	ncl	52	61.538	ENSMGAG00000008147	-	86	63.855	Meleagris_gallopavo
ENSPNYG00000020494	ncl	53	80.769	ENSMMOG00000008553	ncl	83	82.051	Mola_mola
ENSPNYG00000020494	ncl	52	57.520	ENSMODG00000002470	-	54	56.443	Monodelphis_domestica
ENSPNYG00000020494	ncl	93	73.496	ENSMALG00000014827	ncl	58	79.293	Monopterus_albus
ENSPNYG00000020494	ncl	60	98.806	ENSNBRG00000000146	-	99	98.806	Neolamprologus_brichardi
ENSPNYG00000020494	ncl	63	98.873	ENSNBRG00000001232	ncl	100	98.873	Neolamprologus_brichardi
ENSPNYG00000020494	ncl	100	97.163	ENSONIG00000012508	ncl	100	97.163	Oreochromis_niloticus
ENSPNYG00000020494	ncl	53	38.919	ENSONIG00000010631	-	95	39.024	Oreochromis_niloticus
ENSPNYG00000020494	ncl	69	60.100	ENSOANG00000008732	-	64	60.599	Ornithorhynchus_anatinus
ENSPNYG00000020494	ncl	55	39.646	ENSORLG00000004645	-	83	40.526	Oryzias_latipes
ENSPNYG00000020494	ncl	55	40.152	ENSORLG00020003497	-	74	40.526	Oryzias_latipes_hni
ENSPNYG00000020494	ncl	51	77.215	ENSORLG00015013815	ncl	87	78.797	Oryzias_latipes_hsok
ENSPNYG00000020494	ncl	55	40.704	ENSORLG00015006613	-	77	41.053	Oryzias_latipes_hsok
ENSPNYG00000020494	ncl	56	40.695	ENSOMEG00000015864	-	82	41.316	Oryzias_melastigma
ENSPNYG00000020494	ncl	60	72.577	ENSPKIG00000002604	ncl	53	73.190	Paramormyrops_kingsleyae
ENSPNYG00000020494	ncl	54	59.744	ENSPSIG00000002361	-	53	60.677	Pelodiscus_sinensis
ENSPNYG00000020494	ncl	60	72.554	ENSPMGG00000004709	ncl	79	72.787	Periophthalmus_magnuspinnatus
ENSPNYG00000020494	ncl	52	56.464	ENSPCIG00000003293	-	54	55.959	Phascolarctos_cinereus
ENSPNYG00000020494	ncl	66	75.810	ENSPFOG00000024205	ncl	64	77.619	Poecilia_formosa
ENSPNYG00000020494	ncl	66	75.000	ENSPLAG00000024026	ncl	58	68.941	Poecilia_latipinna
ENSPNYG00000020494	ncl	66	75.647	ENSPMEG00000006000	ncl	63	78.378	Poecilia_mexicana
ENSPNYG00000020494	ncl	60	68.246	ENSPNAG00000006192	ncl	56	68.704	Pygocentrus_nattereri
ENSPNYG00000020494	ncl	55	50.973	ENSSHAG00000007489	-	65	50.584	Sarcophilus_harrisii
ENSPNYG00000020494	ncl	72	68.680	ENSSFOG00015008583	ncl	58	74.531	Scleropages_formosus
ENSPNYG00000020494	ncl	55	44.000	ENSSFOG00015013153	-	75	46.205	Scleropages_formosus
ENSPNYG00000020494	ncl	75	37.431	ENSSMAG00000007582	-	61	45.910	Scophthalmus_maximus
ENSPNYG00000020494	ncl	66	40.552	ENSSDUG00000010922	-	70	44.357	Seriola_dumerili
ENSPNYG00000020494	ncl	53	81.452	ENSSDUG00000006128	ncl	85	81.452	Seriola_dumerili
ENSPNYG00000020494	ncl	64	42.759	ENSSLDG00000015784	-	89	42.926	Seriola_lalandi_dorsalis
ENSPNYG00000020494	ncl	53	60.256	ENSSPUG00000008244	-	54	60.471	Sphenodon_punctatus
ENSPNYG00000020494	ncl	56	44.254	ENSSPAG00000001859	-	61	44.681	Stegastes_partitus
ENSPNYG00000020494	ncl	53	58.355	ENSTGUG00000009782	-	61	57.592	Taeniopygia_guttata
ENSPNYG00000020494	ncl	51	76.257	ENSTNIG00000012186	ncl	61	76.075	Tetraodon_nigroviridis
ENSPNYG00000020494	ncl	55	47.785	ENSXCOG00000003524	ncl	85	61.702	Xiphophorus_couchianus
ENSPNYG00000020494	ncl	53	40.318	ENSXCOG00000007369	-	89	40.053	Xiphophorus_couchianus
ENSPNYG00000020494	ncl	53	77.568	ENSXMAG00000005914	ncl	51	77.568	Xiphophorus_maculatus