EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPNYG00000020651 (Gene tree)
Gene ID: 102203895
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Plus strand
Length: 5422 bases
Position: chrJH419502.1:479558-484979
Accession: 102203895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000027403	RRM_1	PF00076.22	1.5e-33	1	2
ENSPNYP00000027403	RRM_1	PF00076.22	1.5e-33	2	2
ENSPNYP00000027411	RRM_1	PF00076.22	1.5e-33	1	2
ENSPNYP00000027411	RRM_1	PF00076.22	1.5e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000028071	-	3562	XM_005751036	ENSPNYP00000027403	261 (aa)	XP_005751093	UPI0003AF495E
ENSPNYT00000028079	-	2601	-	ENSPNYP00000027411	270 (aa)	-	-

Gene Model

Click here to download ENSPNYG00000020651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000020651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPNYG00000020651	-	65	43.429	ENSPNYG00000004944	-	52	43.605
ENSPNYG00000020651	-	66	48.087	ENSPNYG00000021245	srsf5a	74	41.704
ENSPNYG00000020651	-	77	84.577	ENSPNYG00000017115	-	78	83.085
ENSPNYG00000020651	-	65	45.143	ENSPNYG00000011272	-	55	42.180
ENSPNYG00000020651	-	72	67.914	ENSPNYG00000008644	srsf9	72	67.914
ENSPNYG00000020651	-	64	50.867	ENSPNYG00000002669	srsf5b	92	48.462
ENSPNYG00000020651	-	90	40.254	ENSPNYG00000003796	srsf4	67	40.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000020651	-	73	94.764	ENSACIG00000002623	-	98	93.299	Amphilophus_citrinellus
ENSPNYG00000020651	-	100	100.000	ENSACLG00000021693	-	100	100.000	Astatotilapia_calliptera
ENSPNYG00000020651	-	77	84.577	ENSACLG00000005676	-	78	83.085	Astatotilapia_calliptera
ENSPNYG00000020651	-	74	62.371	WBGene00004700	rsp-3	75	64.615	Caenorhabditis_elegans
ENSPNYG00000020651	-	73	53.684	ENSCING00000000257	-	75	61.151	Ciona_intestinalis
ENSPNYG00000020651	-	73	70.526	ENSCING00000007375	-	76	68.421	Ciona_intestinalis
ENSPNYG00000020651	-	73	70.000	ENSCSAVG00000006093	-	91	67.895	Ciona_savignyi
ENSPNYG00000020651	-	69	54.696	ENSCSAVG00000003567	-	89	50.314	Ciona_savignyi
ENSPNYG00000020651	-	73	65.789	FBgn0283477	SF2	73	67.368	Drosophila_melanogaster
ENSPNYG00000020651	-	95	71.486	ENSEBUG00000009582	-	84	74.020	Eptatretus_burgeri
ENSPNYG00000020651	-	78	92.611	ENSFHEG00000017425	-	100	90.722	Fundulus_heteroclitus
ENSPNYG00000020651	-	73	85.340	ENSGMOG00000010606	-	97	84.817	Gadus_morhua
ENSPNYG00000020651	-	93	92.032	ENSGAFG00000000609	-	93	93.220	Gambusia_affinis
ENSPNYG00000020651	-	77	85.075	ENSGAFG00000012721	-	78	83.582	Gambusia_affinis
ENSPNYG00000020651	-	72	84.574	ENSGACG00000011094	-	96	84.043	Gasterosteus_aculeatus
ENSPNYG00000020651	-	100	99.617	ENSHBUG00000015576	-	100	99.617	Haplochromis_burtoni
ENSPNYG00000020651	-	51	61.364	ENSHBUG00000015600	-	92	56.618	Haplochromis_burtoni
ENSPNYG00000020651	-	77	81.373	ENSHCOG00000008016	-	77	80.882	Hippocampus_comes
ENSPNYG00000020651	-	95	80.952	ENSMFAG00000034223	-	65	84.653	Macaca_fascicularis
ENSPNYG00000020651	-	100	99.234	ENSMZEG00005019071	-	100	99.234	Maylandia_zebra
ENSPNYG00000020651	-	77	84.577	ENSMZEG00005007947	-	78	83.085	Maylandia_zebra
ENSPNYG00000020651	-	78	87.745	ENSMMOG00000018849	-	79	87.745	Mola_mola
ENSPNYG00000020651	-	100	99.234	ENSNBRG00000008134	-	100	99.234	Neolamprologus_brichardi
ENSPNYG00000020651	-	77	84.577	ENSNBRG00000019981	-	78	83.085	Neolamprologus_brichardi
ENSPNYG00000020651	-	66	64.162	ENSOPRG00000004745	-	96	64.162	Ochotona_princeps
ENSPNYG00000020651	-	96	98.810	ENSONIG00000004857	-	99	98.810	Oreochromis_niloticus
ENSPNYG00000020651	-	51	86.957	ENSOANG00000007320	-	53	96.512	Ornithorhynchus_anatinus
ENSPNYG00000020651	-	69	51.667	ENSOCUG00000026856	-	96	53.333	Oryctolagus_cuniculus
ENSPNYG00000020651	-	100	93.870	ENSORLG00000005314	-	99	93.870	Oryzias_latipes
ENSPNYG00000020651	-	100	93.870	ENSORLG00015015497	-	99	93.870	Oryzias_latipes_hsok
ENSPNYG00000020651	-	100	95.785	ENSOMEG00000017711	-	98	95.785	Oryzias_melastigma
ENSPNYG00000020651	-	77	83.333	ENSPLAG00000019553	-	91	83.684	Poecilia_latipinna
ENSPNYG00000020651	-	72	84.574	ENSPLAG00000019613	-	71	84.043	Poecilia_latipinna
ENSPNYG00000020651	-	79	92.271	ENSPREG00000016792	-	93	92.373	Poecilia_reticulata
ENSPNYG00000020651	-	82	88.785	ENSSFOG00015004989	-	71	86.634	Scleropages_formosus
ENSPNYG00000020651	-	77	92.344	ENSSDUG00000003887	-	92	91.701	Seriola_dumerili
ENSPNYG00000020651	-	78	82.843	ENSTRUG00000017058	-	80	81.863	Takifugu_rubripes
ENSPNYG00000020651	-	78	79.512	ENSTNIG00000009993	-	81	79.024	Tetraodon_nigroviridis
ENSPNYG00000020651	-	77	83.333	ENSXCOG00000009643	-	78	84.264	Xiphophorus_couchianus
ENSPNYG00000020651	-	79	92.754	ENSXCOG00000017888	-	93	92.797	Xiphophorus_couchianus
ENSPNYG00000020651	-	93	91.633	ENSXMAG00000010797	-	93	92.797	Xiphophorus_maculatus