EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000022262 (Gene tree)
Gene ID: 102213068
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 7170 bases
Position: chrJH419519.1:403796-410965
Accession: 102213068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000029545	HVSL	PF09749.9	8.5e-65	1	1
ENSPNYP00000029548	HVSL	PF09749.9	1.8e-53	1	2
ENSPNYP00000029548	HVSL	PF09749.9	1.8e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000030265	-	1111	XM_005751517	ENSPNYP00000029548	262 (aa)	XP_005751574	UPI0003AF4DC2
ENSPNYT00000030262	-	1165	XM_005751516	ENSPNYP00000029545	280 (aa)	XP_005751573	UPI0003AFDED2

Gene Model

Click here to download ENSPNYG00000022262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000022262's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000022262	usb1	81	54.185	ENSG00000103005	USB1	100	54.673	Homo_sapiens
ENSPNYG00000022262	usb1	100	73.571	ENSAPOG00000011942	usb1	100	73.571	Acanthochromis_polyacanthus
ENSPNYG00000022262	usb1	99	50.538	ENSAMEG00000017205	USB1	98	50.538	Ailuropoda_melanoleuca
ENSPNYG00000022262	usb1	84	83.544	ENSACIG00000012234	usb1	87	83.544	Amphilophus_citrinellus
ENSPNYG00000022262	usb1	99	76.512	ENSAOCG00000014831	usb1	99	76.512	Amphiprion_ocellaris
ENSPNYG00000022262	usb1	99	75.801	ENSAPEG00000000296	usb1	99	75.801	Amphiprion_percula
ENSPNYG00000022262	usb1	99	77.305	ENSATEG00000009348	usb1	99	77.305	Anabas_testudineus
ENSPNYG00000022262	usb1	79	56.000	ENSAPLG00000002756	USB1	99	56.000	Anas_platyrhynchos
ENSPNYG00000022262	usb1	80	51.739	ENSACAG00000015481	USB1	99	51.739	Anolis_carolinensis
ENSPNYG00000022262	usb1	81	52.863	ENSANAG00000035640	USB1	94	50.649	Aotus_nancymaae
ENSPNYG00000022262	usb1	100	97.509	ENSACLG00000020586	usb1	100	97.509	Astatotilapia_calliptera
ENSPNYG00000022262	usb1	99	54.167	ENSAMXG00000040146	usb1	83	57.371	Astyanax_mexicanus
ENSPNYG00000022262	usb1	99	48.929	ENSBTAG00000015758	USB1	92	51.639	Bos_taurus
ENSPNYG00000022262	usb1	81	53.744	ENSCJAG00000011733	USB1	94	51.004	Callithrix_jacchus
ENSPNYG00000022262	usb1	99	49.104	ENSCAFG00000008556	USB1	71	49.462	Canis_familiaris
ENSPNYG00000022262	usb1	99	48.561	ENSCAFG00020009263	USB1	85	53.540	Canis_lupus_dingo
ENSPNYG00000022262	usb1	99	49.286	ENSCHIG00000024290	USB1	92	52.263	Capra_hircus
ENSPNYG00000022262	usb1	99	48.746	ENSTSYG00000006997	USB1	98	48.302	Carlito_syrichta
ENSPNYG00000022262	usb1	80	44.196	ENSCAPG00000009057	USB1	96	46.117	Cavia_aperea
ENSPNYG00000022262	usb1	99	48.029	ENSCPOG00000014325	USB1	83	54.464	Cavia_porcellus
ENSPNYG00000022262	usb1	81	53.304	ENSCCAG00000022132	USB1	94	51.082	Cebus_capucinus
ENSPNYG00000022262	usb1	81	53.744	ENSCATG00000032174	USB1	94	51.515	Cercocebus_atys
ENSPNYG00000022262	usb1	61	54.335	ENSCLAG00000007363	USB1	98	54.335	Chinchilla_lanigera
ENSPNYG00000022262	usb1	81	53.744	ENSCSAG00000004783	USB1	94	51.004	Chlorocebus_sabaeus
ENSPNYG00000022262	usb1	80	54.867	ENSCPBG00000026943	USB1	98	50.179	Chrysemys_picta_bellii
ENSPNYG00000022262	usb1	80	30.472	ENSCSAVG00000000894	-	84	30.472	Ciona_savignyi
ENSPNYG00000022262	usb1	80	53.097	ENSCANG00000037135	USB1	94	51.515	Colobus_angolensis_palliatus
ENSPNYG00000022262	usb1	99	49.821	ENSCGRG00001011243	USB1	91	51.852	Cricetulus_griseus_chok1gshd
ENSPNYG00000022262	usb1	99	49.821	ENSCGRG00000013252	USB1	91	51.852	Cricetulus_griseus_crigri
ENSPNYG00000022262	usb1	99	64.769	ENSCSEG00000013881	usb1	99	64.413	Cynoglossus_semilaevis
ENSPNYG00000022262	usb1	80	69.604	ENSCVAG00000009252	usb1	97	69.604	Cyprinodon_variegatus
ENSPNYG00000022262	usb1	86	60.905	ENSDARG00000003841	usb1	100	57.143	Danio_rerio
ENSPNYG00000022262	usb1	84	51.695	ENSDORG00000001888	Usb1	89	51.695	Dipodomys_ordii
ENSPNYG00000022262	usb1	75	40.278	FBgn0037713	CG16790	81	40.278	Drosophila_melanogaster
ENSPNYG00000022262	usb1	99	41.343	ENSETEG00000019682	USB1	94	43.028	Echinops_telfairi
ENSPNYG00000022262	usb1	94	40.426	ENSEBUG00000005889	usb1	95	41.091	Eptatretus_burgeri
ENSPNYG00000022262	usb1	99	49.462	ENSEASG00005005484	USB1	98	48.302	Equus_asinus_asinus
ENSPNYG00000022262	usb1	99	49.281	ENSECAG00000019493	USB1	89	48.106	Equus_caballus
ENSPNYG00000022262	usb1	61	50.289	ENSEEUG00000000154	USB1	65	50.289	Erinaceus_europaeus
ENSPNYG00000022262	usb1	89	65.476	ENSELUG00000010974	usb1	99	62.143	Esox_lucius
ENSPNYG00000022262	usb1	83	52.137	ENSFCAG00000002693	USB1	88	52.137	Felis_catus
ENSPNYG00000022262	usb1	82	52.174	ENSFALG00000006876	USB1	96	48.249	Ficedula_albicollis
ENSPNYG00000022262	usb1	99	48.746	ENSFDAG00000010052	USB1	87	53.680	Fukomys_damarensis
ENSPNYG00000022262	usb1	88	63.347	ENSFHEG00000012334	usb1	98	62.948	Fundulus_heteroclitus
ENSPNYG00000022262	usb1	80	72.646	ENSGMOG00000004228	usb1	100	72.646	Gadus_morhua
ENSPNYG00000022262	usb1	79	55.157	ENSGALG00000035604	USB1	88	55.357	Gallus_gallus
ENSPNYG00000022262	usb1	100	69.718	ENSGAFG00000021890	usb1	99	66.202	Gambusia_affinis
ENSPNYG00000022262	usb1	88	74.400	ENSGACG00000003257	usb1	99	70.567	Gasterosteus_aculeatus
ENSPNYG00000022262	usb1	99	50.896	ENSGAGG00000022572	USB1	90	52.033	Gopherus_agassizii
ENSPNYG00000022262	usb1	81	54.185	ENSGGOG00000017147	USB1	94	51.948	Gorilla_gorilla
ENSPNYG00000022262	usb1	100	98.929	ENSHBUG00000009823	usb1	100	98.929	Haplochromis_burtoni
ENSPNYG00000022262	usb1	99	48.921	ENSHGLG00000016078	USB1	83	53.540	Heterocephalus_glaber_female
ENSPNYG00000022262	usb1	99	48.921	ENSHGLG00100005562	USB1	83	53.540	Heterocephalus_glaber_male
ENSPNYG00000022262	usb1	78	73.973	ENSHCOG00000015633	usb1	100	66.071	Hippocampus_comes
ENSPNYG00000022262	usb1	99	54.671	ENSIPUG00000008601	usb1	78	63.111	Ictalurus_punctatus
ENSPNYG00000022262	usb1	99	49.470	ENSSTOG00000007548	USB1	98	50.352	Ictidomys_tridecemlineatus
ENSPNYG00000022262	usb1	99	50.179	ENSJJAG00000021859	Usb1	85	54.185	Jaculus_jaculus
ENSPNYG00000022262	usb1	99	70.714	ENSKMAG00000007200	usb1	99	70.714	Kryptolebias_marmoratus
ENSPNYG00000022262	usb1	91	69.261	ENSLBEG00000008452	usb1	81	69.380	Labrus_bergylta
ENSPNYG00000022262	usb1	84	48.739	ENSLACG00000000105	USB1	86	50.400	Latimeria_chalumnae
ENSPNYG00000022262	usb1	99	53.710	ENSLOCG00000000465	usb1	99	53.710	Lepisosteus_oculatus
ENSPNYG00000022262	usb1	99	40.559	ENSLAFG00000002267	USB1	83	43.723	Loxodonta_africana
ENSPNYG00000022262	usb1	81	53.744	ENSMFAG00000003926	USB1	94	51.515	Macaca_fascicularis
ENSPNYG00000022262	usb1	81	53.744	ENSMMUG00000022669	USB1	94	51.515	Macaca_mulatta
ENSPNYG00000022262	usb1	81	53.304	ENSMNEG00000042487	USB1	94	51.082	Macaca_nemestrina
ENSPNYG00000022262	usb1	81	53.744	ENSMLEG00000028756	USB1	94	51.515	Mandrillus_leucophaeus
ENSPNYG00000022262	usb1	99	72.760	ENSMAMG00000015092	usb1	99	71.685	Mastacembelus_armatus
ENSPNYG00000022262	usb1	100	97.857	ENSMZEG00005010008	usb1	100	97.857	Maylandia_zebra
ENSPNYG00000022262	usb1	99	49.462	ENSMAUG00000007832	Usb1	85	54.185	Mesocricetus_auratus
ENSPNYG00000022262	usb1	81	53.744	ENSMICG00000004900	USB1	98	48.679	Microcebus_murinus
ENSPNYG00000022262	usb1	99	51.613	ENSMOCG00000022647	Usb1	85	55.066	Microtus_ochrogaster
ENSPNYG00000022262	usb1	80	75.893	ENSMMOG00000000490	usb1	87	75.893	Mola_mola
ENSPNYG00000022262	usb1	87	49.004	ENSMODG00000014067	USB1	99	45.714	Monodelphis_domestica
ENSPNYG00000022262	usb1	100	74.912	ENSMALG00000005930	usb1	100	74.912	Monopterus_albus
ENSPNYG00000022262	usb1	99	48.746	MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	Mus_caroli
ENSPNYG00000022262	usb1	99	49.104	ENSMUSG00000031792	Usb1	99	50.000	Mus_musculus
ENSPNYG00000022262	usb1	81	55.066	MGP_PahariEiJ_G0023019	Usb1	100	52.137	Mus_pahari
ENSPNYG00000022262	usb1	99	49.104	MGP_SPRETEiJ_G0032540	Usb1	85	55.066	Mus_spretus
ENSPNYG00000022262	usb1	99	49.104	ENSMPUG00000004684	USB1	83	51.931	Mustela_putorius_furo
ENSPNYG00000022262	usb1	81	54.626	ENSMLUG00000007400	USB1	98	54.626	Myotis_lucifugus
ENSPNYG00000022262	usb1	99	51.254	ENSNGAG00000009703	Usb1	98	51.254	Nannospalax_galili
ENSPNYG00000022262	usb1	100	90.476	ENSNBRG00000008747	usb1	100	93.069	Neolamprologus_brichardi
ENSPNYG00000022262	usb1	75	54.245	ENSNLEG00000003340	USB1	92	52.174	Nomascus_leucogenys
ENSPNYG00000022262	usb1	99	49.640	ENSODEG00000016214	USB1	90	53.333	Octodon_degus
ENSPNYG00000022262	usb1	99	96.057	ENSONIG00000011063	usb1	100	96.057	Oreochromis_niloticus
ENSPNYG00000022262	usb1	80	53.778	ENSOANG00000012118	USB1	94	53.778	Ornithorhynchus_anatinus
ENSPNYG00000022262	usb1	91	71.984	ENSORLG00000012479	usb1	100	67.376	Oryzias_latipes
ENSPNYG00000022262	usb1	88	73.171	ENSORLG00020018671	usb1	100	66.786	Oryzias_latipes_hni
ENSPNYG00000022262	usb1	91	71.984	ENSORLG00015009679	usb1	96	71.429	Oryzias_latipes_hsok
ENSPNYG00000022262	usb1	100	71.071	ENSOMEG00000012930	usb1	100	70.714	Oryzias_melastigma
ENSPNYG00000022262	usb1	79	54.067	ENSOGAG00000003273	USB1	94	50.649	Otolemur_garnettii
ENSPNYG00000022262	usb1	84	51.852	ENSOARG00000001107	USB1	93	51.852	Ovis_aries
ENSPNYG00000022262	usb1	81	53.744	ENSPPAG00000042137	USB1	94	51.515	Pan_paniscus
ENSPNYG00000022262	usb1	83	51.709	ENSPPRG00000024797	USB1	88	51.709	Panthera_pardus
ENSPNYG00000022262	usb1	83	51.282	ENSPTIG00000007506	USB1	88	51.282	Panthera_tigris_altaica
ENSPNYG00000022262	usb1	79	55.024	ENSPTRG00000008172	USB1	100	54.673	Pan_troglodytes
ENSPNYG00000022262	usb1	81	53.744	ENSPANG00000025138	USB1	94	51.515	Papio_anubis
ENSPNYG00000022262	usb1	99	56.081	ENSPKIG00000015109	usb1	99	57.095	Paramormyrops_kingsleyae
ENSPNYG00000022262	usb1	80	44.395	ENSPSIG00000004305	USB1	100	44.395	Pelodiscus_sinensis
ENSPNYG00000022262	usb1	79	68.919	ENSPMGG00000017725	usb1	85	68.919	Periophthalmus_magnuspinnatus
ENSPNYG00000022262	usb1	99	50.178	ENSPEMG00000016183	Usb1	98	50.178	Peromyscus_maniculatus_bairdii
ENSPNYG00000022262	usb1	79	49.333	ENSPMAG00000000462	usb1	95	49.333	Petromyzon_marinus
ENSPNYG00000022262	usb1	100	69.718	ENSPFOG00000011130	usb1	99	68.551	Poecilia_formosa
ENSPNYG00000022262	usb1	100	69.718	ENSPLAG00000009820	usb1	99	68.551	Poecilia_latipinna
ENSPNYG00000022262	usb1	100	70.070	ENSPMEG00000006402	usb1	99	68.310	Poecilia_mexicana
ENSPNYG00000022262	usb1	88	68.526	ENSPREG00000001047	usb1	99	67.729	Poecilia_reticulata
ENSPNYG00000022262	usb1	76	50.935	ENSPPYG00000007401	USB1	94	48.305	Pongo_abelii
ENSPNYG00000022262	usb1	81	53.304	ENSPCOG00000022612	USB1	86	53.304	Propithecus_coquereli
ENSPNYG00000022262	usb1	99	47.312	ENSPVAG00000004613	USB1	92	50.420	Pteropus_vampyrus
ENSPNYG00000022262	usb1	93	56.489	ENSPNAG00000011736	usb1	87	56.489	Pygocentrus_nattereri
ENSPNYG00000022262	usb1	99	49.104	ENSRNOG00000013216	Usb1	85	55.066	Rattus_norvegicus
ENSPNYG00000022262	usb1	79	54.545	ENSRBIG00000044466	USB1	100	54.206	Rhinopithecus_bieti
ENSPNYG00000022262	usb1	81	53.744	ENSRROG00000029211	USB1	98	49.393	Rhinopithecus_roxellana
ENSPNYG00000022262	usb1	81	53.744	ENSSBOG00000029362	USB1	94	51.502	Saimiri_boliviensis_boliviensis
ENSPNYG00000022262	usb1	77	51.613	ENSSHAG00000006993	USB1	90	51.982	Sarcophilus_harrisii
ENSPNYG00000022262	usb1	99	58.076	ENSSFOG00015023663	usb1	91	58.076	Scleropages_formosus
ENSPNYG00000022262	usb1	100	69.257	ENSSMAG00000015834	usb1	100	69.257	Scophthalmus_maximus
ENSPNYG00000022262	usb1	80	80.357	ENSSDUG00000002949	usb1	100	70.714	Seriola_dumerili
ENSPNYG00000022262	usb1	100	75.972	ENSSLDG00000014174	usb1	100	75.972	Seriola_lalandi_dorsalis
ENSPNYG00000022262	usb1	76	52.336	ENSSPUG00000006741	USB1	100	52.336	Sphenodon_punctatus
ENSPNYG00000022262	usb1	99	75.789	ENSSPAG00000007484	usb1	99	74.737	Stegastes_partitus
ENSPNYG00000022262	usb1	85	52.049	ENSSSCG00000002807	USB1	98	47.547	Sus_scrofa
ENSPNYG00000022262	usb1	75	53.555	ENSTGUG00000004792	USB1	87	52.703	Taeniopygia_guttata
ENSPNYG00000022262	usb1	99	69.176	ENSTRUG00000021069	usb1	92	72.984	Takifugu_rubripes
ENSPNYG00000022262	usb1	99	58.065	ENSTNIG00000000626	usb1	83	66.368	Tetraodon_nigroviridis
ENSPNYG00000022262	usb1	80	38.839	ENSTBEG00000001507	USB1	97	38.839	Tupaia_belangeri
ENSPNYG00000022262	usb1	99	50.538	ENSUAMG00000016823	USB1	98	50.538	Ursus_americanus
ENSPNYG00000022262	usb1	76	54.673	ENSUMAG00000021369	USB1	100	54.673	Ursus_maritimus
ENSPNYG00000022262	usb1	99	48.561	ENSVVUG00000023700	USB1	87	53.540	Vulpes_vulpes
ENSPNYG00000022262	usb1	77	54.839	ENSXETG00000013795	usb1	89	54.709	Xenopus_tropicalis
ENSPNYG00000022262	usb1	89	72.727	ENSXMAG00000024687	usb1	81	67.857	Xiphophorus_maculatus