EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000024093 (Gene tree)
Gene ID: 102197288
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 7837 bases
Position: chrJH420992.1:609-8445
Accession: 102197288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000031933	TUDOR	PF00567.24	0.00025	1	1
ENSPNYP00000031933	SMN	PF06003.12	9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000032696	-	690	XM_005755581	ENSPNYP00000031933	229 (aa)	XP_005755638	-

Gene Model

Click here to download ENSPNYG00000024093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000024093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000024093	smndc1	98	70.222	ENSG00000119953	SMNDC1	92	70.222	Homo_sapiens
ENSPNYG00000024093	smndc1	86	90.404	ENSAPOG00000021772	smndc1	83	90.404	Acanthochromis_polyacanthus
ENSPNYG00000024093	smndc1	98	70.222	ENSAMEG00000005251	SMNDC1	92	70.222	Ailuropoda_melanoleuca
ENSPNYG00000024093	smndc1	86	94.949	ENSACIG00000004819	smndc1	83	94.949	Amphilophus_citrinellus
ENSPNYG00000024093	smndc1	86	89.394	ENSAOCG00000017869	smndc1	83	89.394	Amphiprion_ocellaris
ENSPNYG00000024093	smndc1	86	89.394	ENSAPEG00000007752	smndc1	83	89.394	Amphiprion_percula
ENSPNYG00000024093	smndc1	86	90.404	ENSATEG00000006830	smndc1	83	90.404	Anabas_testudineus
ENSPNYG00000024093	smndc1	86	76.768	ENSAPLG00000004322	SMNDC1	100	76.768	Anas_platyrhynchos
ENSPNYG00000024093	smndc1	98	67.094	ENSACAG00000005983	SMNDC1	98	67.094	Anolis_carolinensis
ENSPNYG00000024093	smndc1	98	70.222	ENSANAG00000032875	SMNDC1	92	70.222	Aotus_nancymaae
ENSPNYG00000024093	smndc1	86	100.000	ENSACLG00000016360	smndc1	83	100.000	Astatotilapia_calliptera
ENSPNYG00000024093	smndc1	86	80.808	ENSAMXG00000020310	smndc1	83	80.808	Astyanax_mexicanus
ENSPNYG00000024093	smndc1	98	70.222	ENSBTAG00000000551	SMNDC1	92	70.222	Bos_taurus
ENSPNYG00000024093	smndc1	98	70.222	ENSCJAG00000018624	SMNDC1	92	70.222	Callithrix_jacchus
ENSPNYG00000024093	smndc1	98	70.222	ENSCAFG00000010720	SMNDC1	92	70.222	Canis_familiaris
ENSPNYG00000024093	smndc1	98	70.222	ENSCAFG00020011913	SMNDC1	92	70.222	Canis_lupus_dingo
ENSPNYG00000024093	smndc1	98	70.222	ENSCHIG00000010604	SMNDC1	100	75.879	Capra_hircus
ENSPNYG00000024093	smndc1	98	70.222	ENSTSYG00000026454	SMNDC1	92	70.222	Carlito_syrichta
ENSPNYG00000024093	smndc1	82	64.894	ENSCAPG00000009132	SMNDC1	91	64.894	Cavia_aperea
ENSPNYG00000024093	smndc1	86	75.758	ENSCPOG00000031666	SMNDC1	92	69.778	Cavia_porcellus
ENSPNYG00000024093	smndc1	98	70.222	ENSCCAG00000021793	SMNDC1	92	70.222	Cebus_capucinus
ENSPNYG00000024093	smndc1	86	75.758	ENSCATG00000035910	SMNDC1	92	69.778	Cercocebus_atys
ENSPNYG00000024093	smndc1	86	75.758	ENSCLAG00000002838	SMNDC1	92	69.778	Chinchilla_lanigera
ENSPNYG00000024093	smndc1	98	70.222	ENSCSAG00000005169	SMNDC1	92	70.222	Chlorocebus_sabaeus
ENSPNYG00000024093	smndc1	79	63.889	ENSCHOG00000002936	SMNDC1	91	63.889	Choloepus_hoffmanni
ENSPNYG00000024093	smndc1	98	70.222	ENSCPBG00000012837	SMNDC1	92	70.222	Chrysemys_picta_bellii
ENSPNYG00000024093	smndc1	98	70.222	ENSCANG00000031720	-	92	70.222	Colobus_angolensis_palliatus
ENSPNYG00000024093	smndc1	86	68.687	ENSCANG00000034620	-	82	68.687	Colobus_angolensis_palliatus
ENSPNYG00000024093	smndc1	98	52.889	ENSCANG00000036994	-	91	52.889	Colobus_angolensis_palliatus
ENSPNYG00000024093	smndc1	98	70.667	ENSCGRG00001012973	Smndc1	92	70.667	Cricetulus_griseus_chok1gshd
ENSPNYG00000024093	smndc1	98	70.667	ENSCGRG00000012396	Smndc1	92	70.667	Cricetulus_griseus_crigri
ENSPNYG00000024093	smndc1	86	81.818	ENSCSEG00000015621	smndc1	83	81.818	Cynoglossus_semilaevis
ENSPNYG00000024093	smndc1	86	85.354	ENSCVAG00000020432	smndc1	83	85.354	Cyprinodon_variegatus
ENSPNYG00000024093	smndc1	86	81.407	ENSDARG00000056235	smndc1	83	81.407	Danio_rerio
ENSPNYG00000024093	smndc1	98	70.222	ENSDNOG00000016387	SMNDC1	76	70.222	Dasypus_novemcinctus
ENSPNYG00000024093	smndc1	98	70.222	ENSDORG00000023715	Smndc1	92	70.222	Dipodomys_ordii
ENSPNYG00000024093	smndc1	83	38.498	FBgn0039977	CG17454	88	40.376	Drosophila_melanogaster
ENSPNYG00000024093	smndc1	86	66.667	ENSEBUG00000010929	smndc1	83	68.657	Eptatretus_burgeri
ENSPNYG00000024093	smndc1	98	70.222	ENSEASG00005014930	SMNDC1	92	70.222	Equus_asinus_asinus
ENSPNYG00000024093	smndc1	98	70.222	ENSECAG00000029973	SMNDC1	92	70.222	Equus_caballus
ENSPNYG00000024093	smndc1	86	55.556	ENSEEUG00000013407	-	100	55.556	Erinaceus_europaeus
ENSPNYG00000024093	smndc1	86	83.333	ENSELUG00000000227	smndc1	83	83.333	Esox_lucius
ENSPNYG00000024093	smndc1	98	70.222	ENSFCAG00000027353	SMNDC1	92	70.222	Felis_catus
ENSPNYG00000024093	smndc1	86	76.768	ENSFALG00000002306	SMNDC1	83	76.768	Ficedula_albicollis
ENSPNYG00000024093	smndc1	86	75.758	ENSFDAG00000006468	SMNDC1	92	69.778	Fukomys_damarensis
ENSPNYG00000024093	smndc1	86	85.859	ENSFHEG00000020150	smndc1	83	85.859	Fundulus_heteroclitus
ENSPNYG00000024093	smndc1	86	80.808	ENSGMOG00000016585	smndc1	83	80.808	Gadus_morhua
ENSPNYG00000024093	smndc1	86	76.768	ENSGALG00000008561	SMNDC1	83	76.768	Gallus_gallus
ENSPNYG00000024093	smndc1	86	87.374	ENSGAFG00000011582	smndc1	83	87.374	Gambusia_affinis
ENSPNYG00000024093	smndc1	86	89.899	ENSGACG00000009468	smndc1	83	89.899	Gasterosteus_aculeatus
ENSPNYG00000024093	smndc1	98	70.222	ENSGAGG00000024547	SMNDC1	92	70.222	Gopherus_agassizii
ENSPNYG00000024093	smndc1	98	70.222	ENSGGOG00000010071	SMNDC1	100	75.879	Gorilla_gorilla
ENSPNYG00000024093	smndc1	86	100.000	ENSHBUG00000017596	smndc1	83	100.000	Haplochromis_burtoni
ENSPNYG00000024093	smndc1	86	75.758	ENSHGLG00000013390	-	92	69.778	Heterocephalus_glaber_female
ENSPNYG00000024093	smndc1	86	52.792	ENSHGLG00000001157	-	77	52.792	Heterocephalus_glaber_female
ENSPNYG00000024093	smndc1	86	60.406	ENSHGLG00100004278	-	79	59.204	Heterocephalus_glaber_male
ENSPNYG00000024093	smndc1	86	75.758	ENSHGLG00100004814	-	92	69.778	Heterocephalus_glaber_male
ENSPNYG00000024093	smndc1	86	82.915	ENSHCOG00000000783	smndc1	83	82.915	Hippocampus_comes
ENSPNYG00000024093	smndc1	86	82.828	ENSIPUG00000004217	smndc1	83	82.828	Ictalurus_punctatus
ENSPNYG00000024093	smndc1	98	70.222	ENSSTOG00000006088	SMNDC1	92	70.222	Ictidomys_tridecemlineatus
ENSPNYG00000024093	smndc1	98	69.778	ENSJJAG00000019974	Smndc1	92	69.778	Jaculus_jaculus
ENSPNYG00000024093	smndc1	92	83.886	ENSKMAG00000020134	smndc1	88	84.286	Kryptolebias_marmoratus
ENSPNYG00000024093	smndc1	86	86.364	ENSLBEG00000004598	smndc1	83	86.364	Labrus_bergylta
ENSPNYG00000024093	smndc1	86	72.727	ENSLACG00000007784	SMNDC1	83	72.727	Latimeria_chalumnae
ENSPNYG00000024093	smndc1	86	80.808	ENSLOCG00000012355	smndc1	83	80.808	Lepisosteus_oculatus
ENSPNYG00000024093	smndc1	98	69.778	ENSLAFG00000014353	SMNDC1	92	69.778	Loxodonta_africana
ENSPNYG00000024093	smndc1	98	70.222	ENSMFAG00000002433	-	92	70.222	Macaca_fascicularis
ENSPNYG00000024093	smndc1	98	60.000	ENSMFAG00000038381	-	83	72.316	Macaca_fascicularis
ENSPNYG00000024093	smndc1	98	60.000	ENSMMUG00000045875	-	83	72.316	Macaca_mulatta
ENSPNYG00000024093	smndc1	98	70.222	ENSMMUG00000007775	SMNDC1	92	70.222	Macaca_mulatta
ENSPNYG00000024093	smndc1	98	60.444	ENSMNEG00000033853	-	92	60.444	Macaca_nemestrina
ENSPNYG00000024093	smndc1	98	70.222	ENSMNEG00000042963	-	92	70.222	Macaca_nemestrina
ENSPNYG00000024093	smndc1	100	65.066	ENSMLEG00000040236	SMNDC1	94	64.629	Mandrillus_leucophaeus
ENSPNYG00000024093	smndc1	76	86.705	ENSMAMG00000018233	smndc1	71	86.705	Mastacembelus_armatus
ENSPNYG00000024093	smndc1	86	100.000	ENSMZEG00005027510	smndc1	83	100.000	Maylandia_zebra
ENSPNYG00000024093	smndc1	95	71.364	ENSMGAG00000010777	SMNDC1	93	71.364	Meleagris_gallopavo
ENSPNYG00000024093	smndc1	98	70.222	ENSMAUG00000012243	-	92	70.222	Mesocricetus_auratus
ENSPNYG00000024093	smndc1	86	59.898	ENSMAUG00000005459	-	77	59.898	Mesocricetus_auratus
ENSPNYG00000024093	smndc1	86	63.131	ENSMICG00000031640	-	82	63.131	Microcebus_murinus
ENSPNYG00000024093	smndc1	87	74.874	ENSMICG00000027336	-	100	74.874	Microcebus_murinus
ENSPNYG00000024093	smndc1	98	69.778	ENSMOCG00000002458	Smndc1	92	69.778	Microtus_ochrogaster
ENSPNYG00000024093	smndc1	86	85.859	ENSMMOG00000008856	smndc1	83	85.859	Mola_mola
ENSPNYG00000024093	smndc1	98	70.222	ENSMODG00000010542	SMNDC1	92	70.222	Monodelphis_domestica
ENSPNYG00000024093	smndc1	86	88.889	ENSMALG00000017598	smndc1	83	88.889	Monopterus_albus
ENSPNYG00000024093	smndc1	86	75.253	MGP_CAROLIEiJ_G0023072	Smndc1	92	69.333	Mus_caroli
ENSPNYG00000024093	smndc1	98	69.778	ENSMUSG00000025024	Smndc1	92	69.778	Mus_musculus
ENSPNYG00000024093	smndc1	98	69.778	MGP_PahariEiJ_G0014560	Smndc1	92	69.778	Mus_pahari
ENSPNYG00000024093	smndc1	98	69.778	MGP_SPRETEiJ_G0023993	Smndc1	92	69.778	Mus_spretus
ENSPNYG00000024093	smndc1	98	70.222	ENSMPUG00000002089	SMNDC1	92	70.222	Mustela_putorius_furo
ENSPNYG00000024093	smndc1	98	70.222	ENSMLUG00000016007	SMNDC1	92	70.222	Myotis_lucifugus
ENSPNYG00000024093	smndc1	98	67.521	ENSNGAG00000006833	Smndc1	98	67.521	Nannospalax_galili
ENSPNYG00000024093	smndc1	86	98.990	ENSNBRG00000017089	smndc1	83	98.990	Neolamprologus_brichardi
ENSPNYG00000024093	smndc1	98	70.222	ENSNLEG00000015471	SMNDC1	92	70.222	Nomascus_leucogenys
ENSPNYG00000024093	smndc1	85	53.535	ENSMEUG00000010120	-	98	53.535	Notamacropus_eugenii
ENSPNYG00000024093	smndc1	86	75.758	ENSOPRG00000015348	SMNDC1	92	69.778	Ochotona_princeps
ENSPNYG00000024093	smndc1	86	58.081	ENSODEG00000007594	-	87	55.556	Octodon_degus
ENSPNYG00000024093	smndc1	86	98.990	ENSONIG00000000434	smndc1	83	98.990	Oreochromis_niloticus
ENSPNYG00000024093	smndc1	86	76.263	ENSOANG00000001598	SMNDC1	92	70.222	Ornithorhynchus_anatinus
ENSPNYG00000024093	smndc1	86	75.758	ENSOCUG00000008145	-	92	69.778	Oryctolagus_cuniculus
ENSPNYG00000024093	smndc1	87	55.500	ENSOCUG00000012274	-	83	58.500	Oryctolagus_cuniculus
ENSPNYG00000024093	smndc1	86	80.303	ENSORLG00000005934	smndc1	79	80.303	Oryzias_latipes
ENSPNYG00000024093	smndc1	86	80.303	ENSORLG00020008796	smndc1	79	80.303	Oryzias_latipes_hni
ENSPNYG00000024093	smndc1	86	79.798	ENSORLG00015013666	smndc1	83	79.798	Oryzias_latipes_hsok
ENSPNYG00000024093	smndc1	86	79.293	ENSOMEG00000007590	smndc1	83	79.293	Oryzias_melastigma
ENSPNYG00000024093	smndc1	98	70.222	ENSOGAG00000000571	SMNDC1	92	70.222	Otolemur_garnettii
ENSPNYG00000024093	smndc1	98	70.222	ENSOARG00000009500	SMNDC1	92	70.222	Ovis_aries
ENSPNYG00000024093	smndc1	98	70.222	ENSPPAG00000027815	SMNDC1	100	75.879	Pan_paniscus
ENSPNYG00000024093	smndc1	98	70.222	ENSPPRG00000013749	SMNDC1	92	70.222	Panthera_pardus
ENSPNYG00000024093	smndc1	98	70.222	ENSPTIG00000011451	SMNDC1	92	70.222	Panthera_tigris_altaica
ENSPNYG00000024093	smndc1	98	70.222	ENSPTRG00000002937	SMNDC1	100	75.879	Pan_troglodytes
ENSPNYG00000024093	smndc1	98	65.333	ENSPANG00000031346	-	92	65.333	Papio_anubis
ENSPNYG00000024093	smndc1	98	70.222	ENSPANG00000020805	-	92	70.222	Papio_anubis
ENSPNYG00000024093	smndc1	86	78.788	ENSPKIG00000017164	smndc1	83	80.500	Paramormyrops_kingsleyae
ENSPNYG00000024093	smndc1	98	70.222	ENSPSIG00000012257	SMNDC1	92	70.222	Pelodiscus_sinensis
ENSPNYG00000024093	smndc1	86	80.303	ENSPMGG00000015651	smndc1	83	80.303	Periophthalmus_magnuspinnatus
ENSPNYG00000024093	smndc1	98	70.222	ENSPEMG00000022058	Smndc1	92	70.222	Peromyscus_maniculatus_bairdii
ENSPNYG00000024093	smndc1	86	65.686	ENSPMAG00000007705	smndc1	83	65.686	Petromyzon_marinus
ENSPNYG00000024093	smndc1	72	65.455	ENSPCIG00000009693	-	81	65.455	Phascolarctos_cinereus
ENSPNYG00000024093	smndc1	98	70.222	ENSPCIG00000018419	SMNDC1	92	70.222	Phascolarctos_cinereus
ENSPNYG00000024093	smndc1	86	86.869	ENSPFOG00000017113	smndc1	83	86.869	Poecilia_formosa
ENSPNYG00000024093	smndc1	86	86.869	ENSPLAG00000010372	smndc1	83	86.869	Poecilia_latipinna
ENSPNYG00000024093	smndc1	86	86.869	ENSPMEG00000012288	smndc1	83	86.869	Poecilia_mexicana
ENSPNYG00000024093	smndc1	86	86.364	ENSPREG00000012279	smndc1	83	86.364	Poecilia_reticulata
ENSPNYG00000024093	smndc1	98	70.222	ENSPPYG00000002643	SMNDC1	92	70.222	Pongo_abelii
ENSPNYG00000024093	smndc1	79	60.317	ENSPCAG00000016183	SMNDC1	98	60.317	Procavia_capensis
ENSPNYG00000024093	smndc1	98	69.778	ENSPCOG00000024343	SMNDC1	92	69.778	Propithecus_coquereli
ENSPNYG00000024093	smndc1	98	52.889	ENSPVAG00000004368	SMNDC1	92	52.889	Pteropus_vampyrus
ENSPNYG00000024093	smndc1	86	79.798	ENSPNAG00000025285	smndc1	83	79.798	Pygocentrus_nattereri
ENSPNYG00000024093	smndc1	86	75.253	ENSRNOG00000014833	Smndc1	92	69.333	Rattus_norvegicus
ENSPNYG00000024093	smndc1	98	69.778	ENSRBIG00000000224	-	92	69.778	Rhinopithecus_bieti
ENSPNYG00000024093	smndc1	86	60.606	ENSRBIG00000032452	-	81	60.606	Rhinopithecus_bieti
ENSPNYG00000024093	smndc1	98	70.222	ENSRROG00000044992	-	92	70.222	Rhinopithecus_roxellana
ENSPNYG00000024093	smndc1	86	60.606	ENSRROG00000039125	-	91	56.444	Rhinopithecus_roxellana
ENSPNYG00000024093	smndc1	98	70.222	ENSSBOG00000026789	SMNDC1	100	75.879	Saimiri_boliviensis_boliviensis
ENSPNYG00000024093	smndc1	98	70.222	ENSSHAG00000015189	SMNDC1	100	75.879	Sarcophilus_harrisii
ENSPNYG00000024093	smndc1	86	77.778	ENSSFOG00015008311	smndc1	83	77.778	Scleropages_formosus
ENSPNYG00000024093	smndc1	86	88.384	ENSSMAG00000020118	smndc1	83	88.384	Scophthalmus_maximus
ENSPNYG00000024093	smndc1	86	90.404	ENSSDUG00000015330	smndc1	83	90.404	Seriola_dumerili
ENSPNYG00000024093	smndc1	86	89.899	ENSSLDG00000017325	smndc1	83	89.899	Seriola_lalandi_dorsalis
ENSPNYG00000024093	smndc1	98	69.778	ENSSARG00000006063	SMNDC1	92	69.778	Sorex_araneus
ENSPNYG00000024093	smndc1	98	67.521	ENSSPUG00000004574	SMNDC1	98	67.521	Sphenodon_punctatus
ENSPNYG00000024093	smndc1	86	89.899	ENSSPAG00000000338	smndc1	83	89.899	Stegastes_partitus
ENSPNYG00000024093	smndc1	87	75.879	ENSSSCG00000030507	SMNDC1	100	75.879	Sus_scrofa
ENSPNYG00000024093	smndc1	86	76.768	ENSTGUG00000010599	SMNDC1	83	76.768	Taeniopygia_guttata
ENSPNYG00000024093	smndc1	86	83.838	ENSTRUG00000023281	smndc1	83	83.838	Takifugu_rubripes
ENSPNYG00000024093	smndc1	86	83.838	ENSTNIG00000013331	smndc1	83	83.838	Tetraodon_nigroviridis
ENSPNYG00000024093	smndc1	86	75.758	ENSTBEG00000014337	SMNDC1	92	69.778	Tupaia_belangeri
ENSPNYG00000024093	smndc1	98	70.222	ENSUAMG00000008142	SMNDC1	100	75.879	Ursus_americanus
ENSPNYG00000024093	smndc1	98	70.222	ENSUMAG00000023722	SMNDC1	92	70.222	Ursus_maritimus
ENSPNYG00000024093	smndc1	86	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSPNYG00000024093	smndc1	98	70.222	ENSVVUG00000007820	SMNDC1	92	70.222	Vulpes_vulpes
ENSPNYG00000024093	smndc1	86	86.364	ENSXCOG00000009159	smndc1	83	86.364	Xiphophorus_couchianus
ENSPNYG00000024093	smndc1	86	87.374	ENSXMAG00000012755	smndc1	83	87.374	Xiphophorus_maculatus