EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPNYG00000024151 (Gene tree)
Gene ID: 102214016
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pundamilia_nyererei
Status: putative
Strand: Minus strand
Length: 18897 bases
Position: chrJH419559.1:115788-134684
Accession: 102214016
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPNYP00000032008	EST1	PF10374.9	2.5e-13	1	1
ENSPNYP00000032012	EST1	PF10374.9	7e-13	1	1
ENSPNYP00000032012	EST1_DNA_bind	PF10373.9	2e-51	1	1
ENSPNYP00000032008	EST1_DNA_bind	PF10373.9	4.9e-49	1	1
ENSPNYP00000032012	PIN_4	PF13638.6	9.1e-22	1	1
ENSPNYP00000032008	PIN_4	PF13638.6	2.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPNYT00000032779	-	4416	-	ENSPNYP00000032012	1471 (aa)	-	-
ENSPNYT00000032775	-	4431	XM_005752346	ENSPNYP00000032008	1476 (aa)	XP_005752403	-

Gene Model

Click here to download ENSPNYG00000024151's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPNYG00000024151's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPNYG00000024151	smg6	79	57.328	ENSG00000070366	SMG6	100	61.494	Homo_sapiens
ENSPNYG00000024151	smg6	99	78.836	ENSAPOG00000019448	smg6	93	77.363	Acanthochromis_polyacanthus
ENSPNYG00000024151	smg6	79	56.946	ENSAMEG00000007632	SMG6	71	61.745	Ailuropoda_melanoleuca
ENSPNYG00000024151	smg6	99	84.558	ENSACIG00000012997	smg6	100	82.589	Amphilophus_citrinellus
ENSPNYG00000024151	smg6	99	79.235	ENSAOCG00000002630	smg6	93	78.264	Amphiprion_ocellaris
ENSPNYG00000024151	smg6	99	79.169	ENSAPEG00000019101	smg6	93	78.264	Amphiprion_percula
ENSPNYG00000024151	smg6	99	74.560	ENSATEG00000006483	smg6	93	72.447	Anabas_testudineus
ENSPNYG00000024151	smg6	67	49.612	ENSACAG00000011783	SMG6	99	41.879	Anolis_carolinensis
ENSPNYG00000024151	smg6	79	57.316	ENSANAG00000035760	SMG6	83	56.479	Aotus_nancymaae
ENSPNYG00000024151	smg6	99	96.707	ENSACLG00000005288	smg6	100	94.056	Astatotilapia_calliptera
ENSPNYG00000024151	smg6	70	68.810	ENSAMXG00000017326	smg6	94	60.553	Astyanax_mexicanus
ENSPNYG00000024151	smg6	81	56.436	ENSBTAG00000000267	SMG6	86	55.172	Bos_taurus
ENSPNYG00000024151	smg6	79	57.409	ENSCJAG00000001820	SMG6	83	55.547	Callithrix_jacchus
ENSPNYG00000024151	smg6	79	57.615	ENSCAFG00000019260	SMG6	83	55.897	Canis_familiaris
ENSPNYG00000024151	smg6	79	57.615	ENSCAFG00020009770	SMG6	83	55.897	Canis_lupus_dingo
ENSPNYG00000024151	smg6	79	57.724	ENSCHIG00000021998	SMG6	83	54.173	Capra_hircus
ENSPNYG00000024151	smg6	79	57.085	ENSTSYG00000003406	SMG6	100	60.878	Carlito_syrichta
ENSPNYG00000024151	smg6	76	53.864	ENSCAPG00000016197	SMG6	67	55.556	Cavia_aperea
ENSPNYG00000024151	smg6	82	55.512	ENSCPOG00000014878	SMG6	93	57.759	Cavia_porcellus
ENSPNYG00000024151	smg6	79	57.443	ENSCCAG00000035801	SMG6	83	55.466	Cebus_capucinus
ENSPNYG00000024151	smg6	100	48.702	ENSCATG00000031956	SMG6	88	53.610	Cercocebus_atys
ENSPNYG00000024151	smg6	86	54.552	ENSCLAG00000006748	SMG6	90	56.828	Chinchilla_lanigera
ENSPNYG00000024151	smg6	83	55.966	ENSCSAG00000013800	SMG6	88	53.917	Chlorocebus_sabaeus
ENSPNYG00000024151	smg6	100	48.311	ENSCPBG00000020369	SMG6	100	46.811	Chrysemys_picta_bellii
ENSPNYG00000024151	smg6	86	55.198	ENSCANG00000031764	SMG6	100	61.686	Colobus_angolensis_palliatus
ENSPNYG00000024151	smg6	79	52.323	ENSCGRG00000007782	Smg6	91	49.015	Cricetulus_griseus_crigri
ENSPNYG00000024151	smg6	99	69.180	ENSCSEG00000012757	smg6	97	67.560	Cynoglossus_semilaevis
ENSPNYG00000024151	smg6	99	67.591	ENSCVAG00000012789	smg6	93	66.281	Cyprinodon_variegatus
ENSPNYG00000024151	smg6	99	58.976	ENSDARG00000100481	smg6	90	57.380	Danio_rerio
ENSPNYG00000024151	smg6	79	56.715	ENSDNOG00000048283	SMG6	86	54.082	Dasypus_novemcinctus
ENSPNYG00000024151	smg6	82	59.050	ENSDORG00000016614	Smg6	88	60.930	Dipodomys_ordii
ENSPNYG00000024151	smg6	89	87.500	ENSETEG00000016790	SMG6	76	87.500	Echinops_telfairi
ENSPNYG00000024151	smg6	64	48.600	ENSEBUG00000005059	smg6	64	46.147	Eptatretus_burgeri
ENSPNYG00000024151	smg6	79	57.423	ENSEASG00005009318	SMG6	71	61.782	Equus_asinus_asinus
ENSPNYG00000024151	smg6	79	57.423	ENSECAG00000006519	SMG6	71	61.782	Equus_caballus
ENSPNYG00000024151	smg6	76	60.287	ENSEEUG00000003493	SMG6	82	60.238	Erinaceus_europaeus
ENSPNYG00000024151	smg6	99	62.045	ENSELUG00000005934	smg6	87	67.123	Esox_lucius
ENSPNYG00000024151	smg6	79	57.340	ENSFCAG00000028817	SMG6	72	61.855	Felis_catus
ENSPNYG00000024151	smg6	83	54.637	ENSFALG00000006538	SMG6	89	53.205	Ficedula_albicollis
ENSPNYG00000024151	smg6	86	54.648	ENSFDAG00000015106	SMG6	84	60.976	Fukomys_damarensis
ENSPNYG00000024151	smg6	99	68.543	ENSFHEG00000013282	smg6	93	66.108	Fundulus_heteroclitus
ENSPNYG00000024151	smg6	50	75.814	ENSGMOG00000019077	smg6	58	78.947	Gadus_morhua
ENSPNYG00000024151	smg6	100	47.565	ENSGALG00000003108	SMG6	98	46.591	Gallus_gallus
ENSPNYG00000024151	smg6	99	69.063	ENSGAFG00000000379	smg6	93	65.793	Gambusia_affinis
ENSPNYG00000024151	smg6	90	75.247	ENSGACG00000020521	smg6	99	76.287	Gasterosteus_aculeatus
ENSPNYG00000024151	smg6	81	53.737	ENSGAGG00000025617	SMG6	73	59.734	Gopherus_agassizii
ENSPNYG00000024151	smg6	79	57.409	ENSGGOG00000017156	SMG6	88	53.840	Gorilla_gorilla
ENSPNYG00000024151	smg6	99	95.565	ENSHBUG00000021311	smg6	93	92.946	Haplochromis_burtoni
ENSPNYG00000024151	smg6	86	53.684	ENSHGLG00000012882	SMG6	84	60.488	Heterocephalus_glaber_female
ENSPNYG00000024151	smg6	86	53.869	ENSHGLG00100017815	SMG6	84	60.488	Heterocephalus_glaber_male
ENSPNYG00000024151	smg6	70	69.785	ENSHCOG00000008761	smg6	83	69.607	Hippocampus_comes
ENSPNYG00000024151	smg6	99	56.473	ENSIPUG00000012493	smg6	91	55.184	Ictalurus_punctatus
ENSPNYG00000024151	smg6	86	54.226	ENSSTOG00000028127	SMG6	88	57.919	Ictidomys_tridecemlineatus
ENSPNYG00000024151	smg6	63	51.423	ENSJJAG00000015367	Smg6	61	57.997	Jaculus_jaculus
ENSPNYG00000024151	smg6	99	73.333	ENSKMAG00000000279	smg6	91	72.303	Kryptolebias_marmoratus
ENSPNYG00000024151	smg6	99	74.884	ENSLBEG00000002184	smg6	93	72.622	Labrus_bergylta
ENSPNYG00000024151	smg6	83	55.290	ENSLAFG00000001261	SMG6	88	53.439	Loxodonta_africana
ENSPNYG00000024151	smg6	86	55.198	ENSMFAG00000003394	SMG6	88	53.917	Macaca_fascicularis
ENSPNYG00000024151	smg6	86	55.123	ENSMMUG00000023161	SMG6	88	53.840	Macaca_mulatta
ENSPNYG00000024151	smg6	100	47.462	ENSMNEG00000044592	SMG6	88	51.308	Macaca_nemestrina
ENSPNYG00000024151	smg6	81	62.799	ENSMLEG00000029353	SMG6	89	62.799	Mandrillus_leucophaeus
ENSPNYG00000024151	smg6	99	75.049	ENSMAMG00000020119	smg6	100	74.053	Mastacembelus_armatus
ENSPNYG00000024151	smg6	99	96.505	ENSMZEG00005024736	smg6	93	93.860	Maylandia_zebra
ENSPNYG00000024151	smg6	74	45.414	ENSMGAG00000005401	-	80	50.619	Meleagris_gallopavo
ENSPNYG00000024151	smg6	81	56.211	ENSMICG00000012913	SMG6	86	54.510	Microcebus_murinus
ENSPNYG00000024151	smg6	99	70.929	ENSMMOG00000010883	smg6	93	69.470	Mola_mola
ENSPNYG00000024151	smg6	100	48.724	ENSMODG00000010622	SMG6	83	56.255	Monodelphis_domestica
ENSPNYG00000024151	smg6	98	76.658	ENSMALG00000001106	smg6	93	73.907	Monopterus_albus
ENSPNYG00000024151	smg6	79	56.543	MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	Mus_caroli
ENSPNYG00000024151	smg6	79	56.494	ENSMUSG00000038290	Smg6	96	65.352	Mus_musculus
ENSPNYG00000024151	smg6	79	56.610	MGP_PahariEiJ_G0017866	Smg6	96	64.804	Mus_pahari
ENSPNYG00000024151	smg6	79	56.412	MGP_SPRETEiJ_G0017572	Smg6	96	65.070	Mus_spretus
ENSPNYG00000024151	smg6	79	57.386	ENSMPUG00000013046	SMG6	72	61.759	Mustela_putorius_furo
ENSPNYG00000024151	smg6	83	55.556	ENSMLUG00000005739	SMG6	88	54.370	Myotis_lucifugus
ENSPNYG00000024151	smg6	80	55.261	ENSNGAG00000007287	Smg6	90	59.910	Nannospalax_galili
ENSPNYG00000024151	smg6	100	98.310	ENSNBRG00000009511	smg6	100	98.310	Neolamprologus_brichardi
ENSPNYG00000024151	smg6	83	55.812	ENSNLEG00000017171	SMG6	100	61.494	Nomascus_leucogenys
ENSPNYG00000024151	smg6	79	56.866	ENSMEUG00000015804	SMG6	85	53.381	Notamacropus_eugenii
ENSPNYG00000024151	smg6	54	67.241	ENSOPRG00000000579	SMG6	81	64.103	Ochotona_princeps
ENSPNYG00000024151	smg6	79	58.692	ENSODEG00000008038	SMG6	81	55.689	Octodon_degus
ENSPNYG00000024151	smg6	99	94.157	ENSONIG00000005594	smg6	93	91.580	Oreochromis_niloticus
ENSPNYG00000024151	smg6	83	54.552	ENSOCUG00000013018	SMG6	89	54.087	Oryctolagus_cuniculus
ENSPNYG00000024151	smg6	99	67.551	ENSORLG00000003317	smg6	93	66.452	Oryzias_latipes
ENSPNYG00000024151	smg6	99	67.821	ENSORLG00020015343	smg6	93	66.645	Oryzias_latipes_hni
ENSPNYG00000024151	smg6	99	68.019	ENSORLG00015020454	smg6	93	66.904	Oryzias_latipes_hsok
ENSPNYG00000024151	smg6	99	67.419	ENSOMEG00000010838	smg6	93	66.969	Oryzias_melastigma
ENSPNYG00000024151	smg6	83	55.487	ENSOGAG00000004483	SMG6	88	53.711	Otolemur_garnettii
ENSPNYG00000024151	smg6	79	57.805	ENSOARG00000015076	SMG6	85	55.916	Ovis_aries
ENSPNYG00000024151	smg6	86	54.873	ENSPPAG00000043296	SMG6	85	54.495	Pan_paniscus
ENSPNYG00000024151	smg6	79	57.259	ENSPPRG00000014581	SMG6	72	61.877	Panthera_pardus
ENSPNYG00000024151	smg6	79	57.259	ENSPTIG00000008925	SMG6	100	61.450	Panthera_tigris_altaica
ENSPNYG00000024151	smg6	86	55.097	ENSPTRG00000008544	SMG6	100	61.494	Pan_troglodytes
ENSPNYG00000024151	smg6	83	55.889	ENSPANG00000024588	SMG6	88	53.840	Papio_anubis
ENSPNYG00000024151	smg6	74	53.133	ENSPSIG00000006660	SMG6	84	51.460	Pelodiscus_sinensis
ENSPNYG00000024151	smg6	94	77.949	ENSPMGG00000000844	smg6	92	77.949	Periophthalmus_magnuspinnatus
ENSPNYG00000024151	smg6	79	57.178	ENSPEMG00000020707	Smg6	89	57.014	Peromyscus_maniculatus_bairdii
ENSPNYG00000024151	smg6	99	70.218	ENSPFOG00000012035	smg6	91	72.877	Poecilia_formosa
ENSPNYG00000024151	smg6	99	70.126	ENSPLAG00000017660	smg6	93	67.075	Poecilia_latipinna
ENSPNYG00000024151	smg6	99	70.285	ENSPMEG00000000258	smg6	93	67.010	Poecilia_mexicana
ENSPNYG00000024151	smg6	99	69.617	ENSPREG00000010066	smg6	93	66.881	Poecilia_reticulata
ENSPNYG00000024151	smg6	79	53.505	ENSPPYG00000007790	SMG6	85	50.903	Pongo_abelii
ENSPNYG00000024151	smg6	83	52.538	ENSPCAG00000000552	SMG6	88	51.349	Procavia_capensis
ENSPNYG00000024151	smg6	81	55.931	ENSPCOG00000020925	SMG6	86	54.304	Propithecus_coquereli
ENSPNYG00000024151	smg6	79	53.143	ENSPVAG00000002159	SMG6	71	57.579	Pteropus_vampyrus
ENSPNYG00000024151	smg6	99	53.851	ENSPNAG00000015480	smg6	97	71.020	Pygocentrus_nattereri
ENSPNYG00000024151	smg6	81	55.400	ENSRNOG00000003041	Smg6	97	64.754	Rattus_norvegicus
ENSPNYG00000024151	smg6	86	55.472	ENSRBIG00000024746	SMG6	88	54.490	Rhinopithecus_bieti
ENSPNYG00000024151	smg6	86	55.273	ENSRROG00000030423	SMG6	100	61.686	Rhinopithecus_roxellana
ENSPNYG00000024151	smg6	79	57.362	ENSSBOG00000022518	SMG6	83	53.684	Saimiri_boliviensis_boliviensis
ENSPNYG00000024151	smg6	79	57.385	ENSSHAG00000010045	SMG6	71	61.312	Sarcophilus_harrisii
ENSPNYG00000024151	smg6	99	53.948	ENSSFOG00015005436	smg6	88	53.943	Scleropages_formosus
ENSPNYG00000024151	smg6	99	74.638	ENSSMAG00000019777	smg6	91	74.177	Scophthalmus_maximus
ENSPNYG00000024151	smg6	99	79.682	ENSSDUG00000016412	smg6	93	77.413	Seriola_dumerili
ENSPNYG00000024151	smg6	96	79.292	ENSSLDG00000020747	smg6	98	76.786	Seriola_lalandi_dorsalis
ENSPNYG00000024151	smg6	85	51.180	ENSSPUG00000007152	SMG6	89	51.635	Sphenodon_punctatus
ENSPNYG00000024151	smg6	99	79.024	ENSSPAG00000015633	smg6	93	77.849	Stegastes_partitus
ENSPNYG00000024151	smg6	100	48.352	ENSSSCG00000017826	SMG6	83	55.618	Sus_scrofa
ENSPNYG00000024151	smg6	83	54.273	ENSTGUG00000005836	SMG6	88	52.705	Taeniopygia_guttata
ENSPNYG00000024151	smg6	100	70.553	ENSTRUG00000000358	smg6	100	69.493	Takifugu_rubripes
ENSPNYG00000024151	smg6	100	65.254	ENSTNIG00000016164	smg6	92	75.000	Tetraodon_nigroviridis
ENSPNYG00000024151	smg6	76	63.021	ENSTBEG00000011424	SMG6	80	63.021	Tupaia_belangeri
ENSPNYG00000024151	smg6	70	58.112	ENSTTRG00000001175	SMG6	77	58.112	Tursiops_truncatus
ENSPNYG00000024151	smg6	79	57.004	ENSUAMG00000025152	SMG6	73	61.796	Ursus_americanus
ENSPNYG00000024151	smg6	79	56.981	ENSUMAG00000009306	SMG6	73	61.877	Ursus_maritimus
ENSPNYG00000024151	smg6	65	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSPNYG00000024151	smg6	79	58.347	ENSVVUG00000021727	SMG6	84	56.741	Vulpes_vulpes
ENSPNYG00000024151	smg6	70	56.326	ENSXETG00000023799	SMG6	85	52.124	Xenopus_tropicalis
ENSPNYG00000024151	smg6	100	68.660	ENSXCOG00000009867	smg6	93	67.852	Xiphophorus_couchianus
ENSPNYG00000024151	smg6	99	69.815	ENSXMAG00000010321	smg6	93	66.903	Xiphophorus_maculatus