EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000001260 (Gene tree)
Gene ID: 100994086
Gene Symbol: PRPF38B
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 9476 bases
Position: chr1:110233031-110242506
Accession: 100994086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000000402	PRP38	PF03371.15	2.4e-57	1	1
ENSPPAP00000000409	PRP38	PF03371.15	9.2e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000001678	PRPF38B-203	750	-	ENSPPAP00000000413	249 (aa)	-	A0A2R8Z6K4
ENSPPAT00000001600	PRPF38B-201	3699	XM_003808329	ENSPPAP00000000402	546 (aa)	XP_003808377	A0A2R8Z6J4
ENSPPAT00000001674	PRPF38B-202	573	-	ENSPPAP00000000409	190 (aa)	-	A0A2R8Z6J7

Gene Model

Click here to download ENSPPAG00000001260's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000001260's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000001260	PRPF38B	100	100.000	ENSG00000134186	PRPF38B	100	100.000	Homo_sapiens
ENSPPAG00000001260	PRPF38B	100	99.474	ENSANAG00000028333	PRPF38B	100	99.474	Aotus_nancymaae
ENSPPAG00000001260	PRPF38B	100	94.301	ENSCGRG00001018841	Prpf38b	100	92.532	Cricetulus_griseus_chok1gshd
ENSPPAG00000001260	PRPF38B	83	92.511	ENSCGRG00000002972	Prpf38b	100	92.291	Cricetulus_griseus_crigri
ENSPPAG00000001260	PRPF38B	80	94.713	ENSDORG00000025236	-	100	94.713	Dipodomys_ordii
ENSPPAG00000001260	PRPF38B	76	90.972	ENSEBUG00000001683	-	58	73.134	Eptatretus_burgeri
ENSPPAG00000001260	PRPF38B	100	95.288	ENSEEUG00000014328	PRPF38B	100	92.139	Erinaceus_europaeus
ENSPPAG00000001260	PRPF38B	100	96.337	ENSFDAG00000021009	PRPF38B	100	96.337	Fukomys_damarensis
ENSPPAG00000001260	PRPF38B	100	100.000	ENSGGOG00000011288	PRPF38B	100	100.000	Gorilla_gorilla
ENSPPAG00000001260	PRPF38B	91	88.353	ENSMGAG00000006188	PRPF38B	100	89.157	Meleagris_gallopavo
ENSPPAG00000001260	PRPF38B	100	96.335	ENSMAUG00000019131	Prpf38b	100	92.139	Mesocricetus_auratus
ENSPPAG00000001260	PRPF38B	100	96.842	MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	Mus_caroli
ENSPPAG00000001260	PRPF38B	100	96.335	ENSMUSG00000027881	Prpf38b	99	96.774	Mus_musculus
ENSPPAG00000001260	PRPF38B	100	96.335	MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	Mus_pahari
ENSPPAG00000001260	PRPF38B	100	96.335	MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	Mus_spretus
ENSPPAG00000001260	PRPF38B	100	93.040	ENSNLEG00000030268	-	100	91.941	Nomascus_leucogenys
ENSPPAG00000001260	PRPF38B	100	98.903	ENSNLEG00000001645	-	100	98.903	Nomascus_leucogenys
ENSPPAG00000001260	PRPF38B	100	98.361	ENSPPRG00000002116	PRPF38B	100	98.361	Panthera_pardus
ENSPPAG00000001260	PRPF38B	100	100.000	ENSPTRG00000001032	PRPF38B	100	100.000	Pan_troglodytes
ENSPPAG00000001260	PRPF38B	100	98.903	ENSPANG00000007560	PRPF38B	100	98.903	Papio_anubis
ENSPPAG00000001260	PRPF38B	100	94.845	ENSPCIG00000024841	PRPF38B	61	94.848	Phascolarctos_cinereus
ENSPPAG00000001260	PRPF38B	100	97.445	ENSPVAG00000011929	-	100	97.445	Pteropus_vampyrus
ENSPPAG00000001260	PRPF38B	100	96.370	ENSSARG00000012818	-	100	96.370	Sorex_araneus
ENSPPAG00000001260	PRPF38B	98	87.302	ENSTGUG00000004594	-	71	89.329	Taeniopygia_guttata
ENSPPAG00000001260	PRPF38B	100	98.361	ENSUAMG00000023817	PRPF38B	100	98.361	Ursus_americanus