EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000003072 (Gene tree)
Gene ID: 100993647
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 44402 bases
Position: chr12:96841638-96886039
Accession: 100993647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000000838	LSM	PF01423.22	3.8e-21	1	1
ENSPPAP00000000782	LSM	PF01423.22	4e-21	1	1
ENSPPAP00000000827	LSM	PF01423.22	3.3e-10	1	1
ENSPPAP00000000818	LSM	PF01423.22	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000003837	-	384	-	ENSPPAP00000000818	127 (aa)	-	A0A2R8Z7I0
ENSPPAT00000003852	-	201	-	ENSPPAP00000000827	66 (aa)	-	A0A2R8Z7J5
ENSPPAT00000003888	-	258	-	ENSPPAP00000000838	85 (aa)	-	A0A2R8Z7K3
ENSPPAT00000003677	-	472	XM_008960328	ENSPPAP00000000782	86 (aa)	XP_008958576	A0A2R8Z7G0

Gene Model

Click here to download ENSPPAG00000003072's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000003072's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000003072	-	69	39.560	ENSPPAG00000037453	SRSF3	96	39.560
ENSPPAG00000003072	-	53	41.791	ENSPPAG00000031374	-	52	41.791
ENSPPAG00000003072	-	62	48.101	ENSPPAG00000036509	GEMIN6	58	48.101
ENSPPAG00000003072	-	78	51.515	ENSPPAG00000037929	LSM6	83	51.515
ENSPPAG00000003072	-	92	75.949	ENSPPAG00000037479	-	91	74.667
ENSPPAG00000003072	-	98	80.952	ENSPPAG00000037544	-	83	78.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000003072	-	98	96.923	ENSCHIG00000017139	-	96	96.923	Capra_hircus
ENSPPAG00000003072	-	100	100.000	ENSCATG00000003132	-	100	100.000	Cercocebus_atys
ENSPPAG00000003072	-	74	91.837	ENSCPBG00000001948	-	94	91.837	Chrysemys_picta_bellii
ENSPPAG00000003072	-	100	100.000	ENSCANG00000006758	-	100	100.000	Colobus_angolensis_palliatus
ENSPPAG00000003072	-	91	58.974	ENSFCAG00000037511	-	87	61.644	Felis_catus
ENSPPAG00000003072	-	94	72.581	ENSFCAG00000032773	-	92	72.581	Felis_catus
ENSPPAG00000003072	-	94	75.806	ENSGAGG00000014834	-	98	75.806	Gopherus_agassizii
ENSPPAG00000003072	-	88	81.034	ENSHBUG00000008160	-	90	81.034	Haplochromis_burtoni
ENSPPAG00000003072	-	62	97.561	ENSHCOG00000010425	-	63	97.561	Hippocampus_comes
ENSPPAG00000003072	-	100	100.000	ENSMFAG00000035517	-	100	100.000	Macaca_fascicularis
ENSPPAG00000003072	-	100	100.000	ENSMMUG00000009302	-	100	100.000	Macaca_mulatta
ENSPPAG00000003072	-	100	100.000	ENSMNEG00000030762	-	100	100.000	Macaca_nemestrina
ENSPPAG00000003072	-	100	100.000	ENSMLEG00000033558	-	100	100.000	Mandrillus_leucophaeus
ENSPPAG00000003072	-	100	100.000	ENSNLEG00000005835	-	100	100.000	Nomascus_leucogenys
ENSPPAG00000003072	-	80	96.226	ENSOGAG00000014320	-	100	96.226	Otolemur_garnettii
ENSPPAG00000003072	-	73	76.190	ENSPPRG00000020147	-	100	76.190	Panthera_pardus
ENSPPAG00000003072	-	100	100.000	ENSPTRG00000005317	-	100	100.000	Pan_troglodytes
ENSPPAG00000003072	-	99	100.000	ENSPANG00000014632	-	97	98.824	Papio_anubis
ENSPPAG00000003072	-	100	100.000	ENSPCIG00000017205	-	100	100.000	Phascolarctos_cinereus
ENSPPAG00000003072	-	65	97.674	ENSPFOG00000020883	-	100	93.478	Poecilia_formosa
ENSPPAG00000003072	-	100	100.000	ENSRBIG00000028811	-	100	100.000	Rhinopithecus_bieti
ENSPPAG00000003072	-	100	100.000	ENSRROG00000031057	-	100	100.000	Rhinopithecus_roxellana
ENSPPAG00000003072	-	64	78.182	ENSVVUG00000003155	-	73	78.182	Vulpes_vulpes