EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000005301 (Gene tree)
Gene ID: 100981252
Gene Symbol: CPSF6
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 15488 bases
Position: chr12:69535302-69550789
Accession: 100981252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000001309	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000006190	CPSF6-201	1701	XM_014347230	ENSPPAP00000001309	566 (aa)	-	A0A2R8Z8W7

Gene Model

Click here to download ENSPPAG00000005301's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000005301's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000005301	CPSF6	61	51.282	ENSPPAG00000028232	CPSF7	70	58.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000005301	CPSF6	64	51.282	ENSG00000149532	CPSF7	95	57.471	Homo_sapiens
ENSPPAG00000005301	CPSF6	98	96.853	ENSG00000111605	CPSF6	97	96.853	Homo_sapiens
ENSPPAG00000005301	CPSF6	98	96.678	ENSAMEG00000011781	CPSF6	97	96.678	Ailuropoda_melanoleuca
ENSPPAG00000005301	CPSF6	53	41.026	ENSAOCG00000012357	CPSF7	58	53.043	Amphiprion_ocellaris
ENSPPAG00000005301	CPSF6	53	41.026	ENSAPEG00000015375	CPSF7	58	53.043	Amphiprion_percula
ENSPPAG00000005301	CPSF6	99	96.859	ENSANAG00000019240	CPSF6	99	96.859	Aotus_nancymaae
ENSPPAG00000005301	CPSF6	61	46.766	ENSANAG00000024635	CPSF7	69	53.039	Aotus_nancymaae
ENSPPAG00000005301	CPSF6	57	90.419	ENSAMXG00000016745	CPSF6	71	90.303	Astyanax_mexicanus
ENSPPAG00000005301	CPSF6	61	51.795	ENSBTAG00000015263	CPSF7	70	58.286	Bos_taurus
ENSPPAG00000005301	CPSF6	98	96.678	ENSBTAG00000007323	CPSF6	97	96.678	Bos_taurus
ENSPPAG00000005301	CPSF6	98	97.028	ENSCJAG00000001798	CPSF6	97	97.028	Callithrix_jacchus
ENSPPAG00000005301	CPSF6	64	51.282	ENSCJAG00000019282	CPSF7	83	57.714	Callithrix_jacchus
ENSPPAG00000005301	CPSF6	98	97.193	ENSCAFG00000000424	CPSF6	100	97.193	Canis_familiaris
ENSPPAG00000005301	CPSF6	61	51.795	ENSCAFG00000016152	CPSF7	70	58.857	Canis_familiaris
ENSPPAG00000005301	CPSF6	61	51.795	ENSCAFG00020012753	CPSF7	70	58.857	Canis_lupus_dingo
ENSPPAG00000005301	CPSF6	98	96.853	ENSCAFG00020016950	CPSF6	97	96.853	Canis_lupus_dingo
ENSPPAG00000005301	CPSF6	61	51.795	ENSCHIG00000014655	CPSF7	70	58.286	Capra_hircus
ENSPPAG00000005301	CPSF6	98	96.678	ENSCHIG00000010792	CPSF6	97	96.678	Capra_hircus
ENSPPAG00000005301	CPSF6	98	97.188	ENSTSYG00000008591	CPSF6	97	97.188	Carlito_syrichta
ENSPPAG00000005301	CPSF6	61	51.795	ENSTSYG00000010138	-	70	58.857	Carlito_syrichta
ENSPPAG00000005301	CPSF6	59	51.795	ENSCAPG00000006384	CPSF7	70	58.857	Cavia_aperea
ENSPPAG00000005301	CPSF6	98	96.503	ENSCPOG00000015201	CPSF6	97	96.503	Cavia_porcellus
ENSPPAG00000005301	CPSF6	61	51.795	ENSCPOG00000009980	CPSF7	70	58.857	Cavia_porcellus
ENSPPAG00000005301	CPSF6	61	51.282	ENSCCAG00000032367	CPSF7	70	58.286	Cebus_capucinus
ENSPPAG00000005301	CPSF6	98	97.028	ENSCCAG00000028149	CPSF6	97	97.028	Cebus_capucinus
ENSPPAG00000005301	CPSF6	98	96.853	ENSCATG00000039288	CPSF6	97	96.853	Cercocebus_atys
ENSPPAG00000005301	CPSF6	64	51.282	ENSCATG00000042801	CPSF7	76	58.286	Cercocebus_atys
ENSPPAG00000005301	CPSF6	98	96.837	ENSCLAG00000010149	CPSF6	100	96.837	Chinchilla_lanigera
ENSPPAG00000005301	CPSF6	61	51.795	ENSCLAG00000003174	CPSF7	70	58.286	Chinchilla_lanigera
ENSPPAG00000005301	CPSF6	98	96.853	ENSCSAG00000004232	CPSF6	97	96.853	Chlorocebus_sabaeus
ENSPPAG00000005301	CPSF6	64	51.282	ENSCSAG00000006414	CPSF7	76	58.286	Chlorocebus_sabaeus
ENSPPAG00000005301	CPSF6	98	97.188	ENSCANG00000037294	CPSF6	100	97.188	Colobus_angolensis_palliatus
ENSPPAG00000005301	CPSF6	98	96.853	ENSCGRG00001018082	Cpsf6	97	96.853	Cricetulus_griseus_chok1gshd
ENSPPAG00000005301	CPSF6	61	52.308	ENSCGRG00001020382	Cpsf7	70	59.429	Cricetulus_griseus_chok1gshd
ENSPPAG00000005301	CPSF6	98	97.188	ENSCGRG00000016909	Cpsf6	100	97.188	Cricetulus_griseus_crigri
ENSPPAG00000005301	CPSF6	67	51.152	ENSCGRG00000017954	Cpsf7	76	59.429	Cricetulus_griseus_crigri
ENSPPAG00000005301	CPSF6	59	39.175	ENSCVAG00000007392	CPSF7	66	44.521	Cyprinodon_variegatus
ENSPPAG00000005301	CPSF6	98	90.210	ENSDNOG00000015292	CPSF6	97	90.210	Dasypus_novemcinctus
ENSPPAG00000005301	CPSF6	61	51.795	ENSDNOG00000018517	CPSF7	83	58.286	Dasypus_novemcinctus
ENSPPAG00000005301	CPSF6	98	97.188	ENSDORG00000002950	Cpsf6	100	97.188	Dipodomys_ordii
ENSPPAG00000005301	CPSF6	98	89.510	ENSETEG00000002097	CPSF6	97	89.510	Echinops_telfairi
ENSPPAG00000005301	CPSF6	98	96.853	ENSEASG00005008066	CPSF6	97	96.853	Equus_asinus_asinus
ENSPPAG00000005301	CPSF6	61	51.795	ENSEASG00005008196	CPSF7	70	58.857	Equus_asinus_asinus
ENSPPAG00000005301	CPSF6	98	96.853	ENSECAG00000015988	CPSF6	97	96.853	Equus_caballus
ENSPPAG00000005301	CPSF6	62	49.451	ENSECAG00000018521	CPSF7	90	58.286	Equus_caballus
ENSPPAG00000005301	CPSF6	98	96.485	ENSEEUG00000015039	CPSF6	100	96.485	Erinaceus_europaeus
ENSPPAG00000005301	CPSF6	98	96.678	ENSFCAG00000002855	CPSF6	97	96.678	Felis_catus
ENSPPAG00000005301	CPSF6	61	51.795	ENSFCAG00000013677	CPSF7	90	58.286	Felis_catus
ENSPPAG00000005301	CPSF6	60	56.452	ENSFALG00000011927	CPSF7	75	58.140	Ficedula_albicollis
ENSPPAG00000005301	CPSF6	99	95.000	ENSFDAG00000002281	CPSF6	99	95.000	Fukomys_damarensis
ENSPPAG00000005301	CPSF6	61	52.308	ENSFDAG00000003919	CPSF7	70	58.857	Fukomys_damarensis
ENSPPAG00000005301	CPSF6	59	51.397	ENSGALG00000040962	CPSF7	62	58.960	Gallus_gallus
ENSPPAG00000005301	CPSF6	98	97.028	ENSGGOG00000008211	CPSF6	97	97.028	Gorilla_gorilla
ENSPPAG00000005301	CPSF6	98	96.329	ENSHGLG00000000792	CPSF6	97	96.329	Heterocephalus_glaber_female
ENSPPAG00000005301	CPSF6	64	52.308	ENSHGLG00000019090	-	76	58.857	Heterocephalus_glaber_female
ENSPPAG00000005301	CPSF6	98	96.661	ENSHGLG00100013861	CPSF6	100	96.661	Heterocephalus_glaber_male
ENSPPAG00000005301	CPSF6	61	51.795	ENSSTOG00000007708	CPSF7	70	58.857	Ictidomys_tridecemlineatus
ENSPPAG00000005301	CPSF6	98	97.023	ENSSTOG00000014133	CPSF6	100	90.685	Ictidomys_tridecemlineatus
ENSPPAG00000005301	CPSF6	98	97.188	ENSJJAG00000014647	Cpsf6	100	97.188	Jaculus_jaculus
ENSPPAG00000005301	CPSF6	64	51.795	ENSJJAG00000019390	Cpsf7	76	58.857	Jaculus_jaculus
ENSPPAG00000005301	CPSF6	51	40.541	ENSLBEG00000000947	CPSF7	55	50.000	Labrus_bergylta
ENSPPAG00000005301	CPSF6	61	44.231	ENSLACG00000005542	CPSF7	69	44.231	Latimeria_chalumnae
ENSPPAG00000005301	CPSF6	71	88.780	ENSLAFG00000030413	CPSF6	97	90.385	Loxodonta_africana
ENSPPAG00000005301	CPSF6	61	52.308	ENSLAFG00000032084	CPSF7	70	59.429	Loxodonta_africana
ENSPPAG00000005301	CPSF6	61	51.282	ENSMFAG00000001401	CPSF7	70	58.286	Macaca_fascicularis
ENSPPAG00000005301	CPSF6	98	97.028	ENSMFAG00000045318	CPSF6	97	97.028	Macaca_fascicularis
ENSPPAG00000005301	CPSF6	64	51.282	ENSMMUG00000015280	CPSF7	76	58.286	Macaca_mulatta
ENSPPAG00000005301	CPSF6	98	97.028	ENSMMUG00000002921	CPSF6	97	97.028	Macaca_mulatta
ENSPPAG00000005301	CPSF6	98	97.028	ENSMNEG00000036311	CPSF6	97	97.028	Macaca_nemestrina
ENSPPAG00000005301	CPSF6	64	51.282	ENSMNEG00000029585	CPSF7	76	58.286	Macaca_nemestrina
ENSPPAG00000005301	CPSF6	61	51.282	ENSMLEG00000031269	CPSF7	70	58.286	Mandrillus_leucophaeus
ENSPPAG00000005301	CPSF6	98	97.188	ENSMLEG00000003957	CPSF6	100	97.188	Mandrillus_leucophaeus
ENSPPAG00000005301	CPSF6	95	39.531	ENSMGAG00000004876	CPSF7	61	58.084	Meleagris_gallopavo
ENSPPAG00000005301	CPSF6	98	96.853	ENSMAUG00000013240	Cpsf6	97	96.853	Mesocricetus_auratus
ENSPPAG00000005301	CPSF6	61	51.795	ENSMAUG00000013020	Cpsf7	70	58.857	Mesocricetus_auratus
ENSPPAG00000005301	CPSF6	61	51.795	ENSMICG00000013788	CPSF7	70	58.857	Microcebus_murinus
ENSPPAG00000005301	CPSF6	98	96.853	ENSMICG00000007385	-	97	96.853	Microcebus_murinus
ENSPPAG00000005301	CPSF6	98	96.853	ENSMOCG00000013982	Cpsf6	97	96.853	Microtus_ochrogaster
ENSPPAG00000005301	CPSF6	61	51.795	ENSMOCG00000000072	Cpsf7	70	58.857	Microtus_ochrogaster
ENSPPAG00000005301	CPSF6	61	53.061	ENSMODG00000020364	CPSF7	71	57.386	Monodelphis_domestica
ENSPPAG00000005301	CPSF6	69	89.175	ENSMALG00000014908	cpsf6	75	89.326	Monopterus_albus
ENSPPAG00000005301	CPSF6	98	96.853	MGP_CAROLIEiJ_G0015834	Cpsf6	97	96.853	Mus_caroli
ENSPPAG00000005301	CPSF6	61	51.795	MGP_CAROLIEiJ_G0022690	Cpsf7	70	58.857	Mus_caroli
ENSPPAG00000005301	CPSF6	61	51.795	ENSMUSG00000034820	Cpsf7	70	58.857	Mus_musculus
ENSPPAG00000005301	CPSF6	98	96.503	ENSMUSG00000055531	Cpsf6	97	96.503	Mus_musculus
ENSPPAG00000005301	CPSF6	61	51.795	MGP_PahariEiJ_G0014184	Cpsf7	70	58.857	Mus_pahari
ENSPPAG00000005301	CPSF6	83	99.013	MGP_PahariEiJ_G0031253	Cpsf6	54	99.020	Mus_pahari
ENSPPAG00000005301	CPSF6	98	96.503	MGP_SPRETEiJ_G0016657	Cpsf6	97	96.503	Mus_spretus
ENSPPAG00000005301	CPSF6	61	51.795	MGP_SPRETEiJ_G0023604	Cpsf7	70	58.857	Mus_spretus
ENSPPAG00000005301	CPSF6	59	50.769	ENSMPUG00000014163	CPSF7	68	57.714	Mustela_putorius_furo
ENSPPAG00000005301	CPSF6	77	91.367	ENSMLUG00000028728	-	89	79.518	Myotis_lucifugus
ENSPPAG00000005301	CPSF6	64	51.795	ENSMLUG00000013278	CPSF7	76	58.857	Myotis_lucifugus
ENSPPAG00000005301	CPSF6	68	84.783	ENSMLUG00000023960	-	75	82.915	Myotis_lucifugus
ENSPPAG00000005301	CPSF6	61	51.795	ENSNGAG00000005031	Cpsf7	70	58.857	Nannospalax_galili
ENSPPAG00000005301	CPSF6	98	96.853	ENSNGAG00000015901	Cpsf6	97	96.853	Nannospalax_galili
ENSPPAG00000005301	CPSF6	61	51.282	ENSNLEG00000002529	CPSF7	65	58.286	Nomascus_leucogenys
ENSPPAG00000005301	CPSF6	98	96.853	ENSNLEG00000003798	CPSF6	97	96.853	Nomascus_leucogenys
ENSPPAG00000005301	CPSF6	54	98.355	ENSMEUG00000015041	CPSF6	52	98.366	Notamacropus_eugenii
ENSPPAG00000005301	CPSF6	61	54.167	ENSMEUG00000002261	CPSF7	70	58.721	Notamacropus_eugenii
ENSPPAG00000005301	CPSF6	98	96.661	ENSOPRG00000005199	CPSF6	100	96.661	Ochotona_princeps
ENSPPAG00000005301	CPSF6	61	49.495	ENSODEG00000002610	CPSF7	71	58.427	Octodon_degus
ENSPPAG00000005301	CPSF6	81	99.197	ENSODEG00000004418	-	86	99.435	Octodon_degus
ENSPPAG00000005301	CPSF6	57	90.964	ENSONIG00000011702	cpsf6	69	90.964	Oreochromis_niloticus
ENSPPAG00000005301	CPSF6	98	96.853	ENSOCUG00000013505	CPSF6	97	96.853	Oryctolagus_cuniculus
ENSPPAG00000005301	CPSF6	99	37.167	ENSOCUG00000024726	CPSF7	71	58.286	Oryctolagus_cuniculus
ENSPPAG00000005301	CPSF6	75	35.193	ENSORLG00000006495	CPSF7	55	49.558	Oryzias_latipes
ENSPPAG00000005301	CPSF6	75	35.345	ENSORLG00020012657	CPSF7	55	49.558	Oryzias_latipes_hni
ENSPPAG00000005301	CPSF6	65	36.813	ENSOMEG00000000539	CPSF7	70	37.037	Oryzias_melastigma
ENSPPAG00000005301	CPSF6	61	51.795	ENSOGAG00000027958	CPSF7	66	58.857	Otolemur_garnettii
ENSPPAG00000005301	CPSF6	98	97.198	ENSOARG00000020532	CPSF6	100	97.198	Ovis_aries
ENSPPAG00000005301	CPSF6	61	51.795	ENSOARG00000012937	CPSF7	64	58.286	Ovis_aries
ENSPPAG00000005301	CPSF6	61	51.795	ENSPPRG00000008538	CPSF7	70	58.857	Panthera_pardus
ENSPPAG00000005301	CPSF6	98	96.678	ENSPPRG00000021620	CPSF6	97	96.678	Panthera_pardus
ENSPPAG00000005301	CPSF6	92	96.834	ENSPTIG00000004079	CPSF6	100	96.834	Panthera_tigris_altaica
ENSPPAG00000005301	CPSF6	61	51.795	ENSPTIG00000021699	CPSF7	70	58.857	Panthera_tigris_altaica
ENSPPAG00000005301	CPSF6	98	97.028	ENSPTRG00000005205	CPSF6	97	97.028	Pan_troglodytes
ENSPPAG00000005301	CPSF6	61	51.282	ENSPTRG00000003742	CPSF7	70	58.286	Pan_troglodytes
ENSPPAG00000005301	CPSF6	61	51.282	ENSPANG00000006037	CPSF7	70	58.286	Papio_anubis
ENSPPAG00000005301	CPSF6	98	96.853	ENSPANG00000011641	CPSF6	97	96.853	Papio_anubis
ENSPPAG00000005301	CPSF6	59	48.023	ENSPKIG00000018054	CPSF7	75	44.681	Paramormyrops_kingsleyae
ENSPPAG00000005301	CPSF6	64	94.512	ENSPSIG00000016360	CPSF6	76	94.512	Pelodiscus_sinensis
ENSPPAG00000005301	CPSF6	64	51.795	ENSPEMG00000012648	Cpsf7	76	58.857	Peromyscus_maniculatus_bairdii
ENSPPAG00000005301	CPSF6	98	97.012	ENSPEMG00000007973	Cpsf6	100	97.012	Peromyscus_maniculatus_bairdii
ENSPPAG00000005301	CPSF6	61	53.061	ENSPCIG00000002551	CPSF7	84	56.284	Phascolarctos_cinereus
ENSPPAG00000005301	CPSF6	98	96.154	ENSPCIG00000019063	CPSF6	97	96.154	Phascolarctos_cinereus
ENSPPAG00000005301	CPSF6	54	72.638	ENSPMEG00000001353	cpsf6	51	69.381	Poecilia_mexicana
ENSPPAG00000005301	CPSF6	61	51.282	ENSPPYG00000003188	CPSF7	70	58.286	Pongo_abelii
ENSPPAG00000005301	CPSF6	98	96.853	ENSPCAG00000011574	CPSF6	97	96.853	Procavia_capensis
ENSPPAG00000005301	CPSF6	61	51.795	ENSPCOG00000011976	CPSF7	70	58.857	Propithecus_coquereli
ENSPPAG00000005301	CPSF6	98	96.853	ENSPCOG00000024384	CPSF6	97	96.853	Propithecus_coquereli
ENSPPAG00000005301	CPSF6	61	51.795	ENSPVAG00000010675	CPSF7	70	58.857	Pteropus_vampyrus
ENSPPAG00000005301	CPSF6	98	96.329	ENSPVAG00000015753	CPSF6	97	96.329	Pteropus_vampyrus
ENSPPAG00000005301	CPSF6	53	46.497	ENSPNAG00000015073	CPSF7	68	47.879	Pygocentrus_nattereri
ENSPPAG00000005301	CPSF6	64	51.282	ENSRNOG00000020668	Cpsf7	76	58.721	Rattus_norvegicus
ENSPPAG00000005301	CPSF6	98	96.853	ENSRBIG00000042827	CPSF6	97	96.853	Rhinopithecus_bieti
ENSPPAG00000005301	CPSF6	64	51.282	ENSRBIG00000031429	CPSF7	90	57.714	Rhinopithecus_bieti
ENSPPAG00000005301	CPSF6	61	51.282	ENSRROG00000045009	CPSF7	70	58.286	Rhinopithecus_roxellana
ENSPPAG00000005301	CPSF6	98	96.678	ENSRROG00000042758	CPSF6	97	96.678	Rhinopithecus_roxellana
ENSPPAG00000005301	CPSF6	61	51.282	ENSSBOG00000018431	CPSF7	70	58.286	Saimiri_boliviensis_boliviensis
ENSPPAG00000005301	CPSF6	99	97.391	ENSSBOG00000010652	CPSF6	100	97.020	Saimiri_boliviensis_boliviensis
ENSPPAG00000005301	CPSF6	60	52.083	ENSSHAG00000011964	CPSF7	68	59.302	Sarcophilus_harrisii
ENSPPAG00000005301	CPSF6	72	41.176	ENSSFOG00015010288	cpsf7	73	40.659	Scleropages_formosus
ENSPPAG00000005301	CPSF6	98	90.334	ENSSARG00000006743	CPSF6	97	90.334	Sorex_araneus
ENSPPAG00000005301	CPSF6	61	52.604	ENSSPUG00000019344	CPSF7	72	55.233	Sphenodon_punctatus
ENSPPAG00000005301	CPSF6	98	96.853	ENSSSCG00000038031	CPSF6	100	97.020	Sus_scrofa
ENSPPAG00000005301	CPSF6	61	51.795	ENSSSCG00000013083	CPSF7	83	58.286	Sus_scrofa
ENSPPAG00000005301	CPSF6	59	54.444	ENSTGUG00000006513	CPSF7	71	55.747	Taeniopygia_guttata
ENSPPAG00000005301	CPSF6	92	90.130	ENSUAMG00000023492	CPSF6	100	90.130	Ursus_americanus
ENSPPAG00000005301	CPSF6	61	51.795	ENSUAMG00000017809	CPSF7	70	58.857	Ursus_americanus
ENSPPAG00000005301	CPSF6	64	51.795	ENSUMAG00000011825	CPSF7	76	58.857	Ursus_maritimus
ENSPPAG00000005301	CPSF6	92	97.020	ENSUMAG00000020779	CPSF6	100	97.020	Ursus_maritimus
ENSPPAG00000005301	CPSF6	98	97.188	ENSVPAG00000008469	CPSF6	100	97.188	Vicugna_pacos
ENSPPAG00000005301	CPSF6	61	51.795	ENSVVUG00000004939	CPSF7	83	58.286	Vulpes_vulpes
ENSPPAG00000005301	CPSF6	92	97.020	ENSVVUG00000010156	-	100	97.020	Vulpes_vulpes
ENSPPAG00000005301	CPSF6	95	37.809	ENSXETG00000006715	cpsf7	62	53.846	Xenopus_tropicalis