EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000007378 (Gene tree)
Gene ID: 100976307
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:90797994-90799142
Accession: 100976307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000001627	RRM_5	PF13893.6	5.5e-13	1	2
ENSPPAP00000001627	RRM_5	PF13893.6	5.5e-13	2	2
ENSPPAP00000001627	RRM_1	PF00076.22	9.2e-77	1	4
ENSPPAP00000001627	RRM_1	PF00076.22	9.2e-77	2	4
ENSPPAP00000001627	RRM_1	PF00076.22	9.2e-77	3	4
ENSPPAP00000001627	RRM_1	PF00076.22	9.2e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000007970	PABPC5-201	1149	XM_003810371	ENSPPAP00000001627	382 (aa)	XP_003810419	A0A2R8ZDJ8

Gene Model

Click here to download ENSPPAG00000007378's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03013	RNA transport	KEGG
pps03015	mRNA surveillance pathway	KEGG
pps03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000007378's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000007378	PABPC5	96	59.877	ENSPPAG00000043745	PABPC4L	91	59.810
ENSPPAG00000007378	PABPC5	94	35.802	ENSPPAG00000041539	ELAVL2	87	35.802
ENSPPAG00000007378	PABPC5	96	41.329	ENSPPAG00000036729	-	52	48.753
ENSPPAG00000007378	PABPC5	96	59.504	ENSPPAG00000039677	PABPC1L	61	59.551
ENSPPAG00000007378	PABPC5	98	62.097	ENSPPAG00000037498	-	68	62.428
ENSPPAG00000007378	PABPC5	83	32.335	ENSPPAG00000032487	NONO	51	33.333
ENSPPAG00000007378	PABPC5	98	42.021	ENSPPAG00000037955	-	62	42.407
ENSPPAG00000007378	PABPC5	96	66.667	ENSPPAG00000043625	PABPC4	60	66.854
ENSPPAG00000007378	PABPC5	93	59.694	ENSPPAG00000012920	-	98	59.375
ENSPPAG00000007378	PABPC5	96	30.508	ENSPPAG00000033927	TRNAU1AP	58	30.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000007378	PABPC5	100	99.738	ENSG00000174740	PABPC5	100	99.738	Homo_sapiens
ENSPPAG00000007378	PABPC5	99	97.113	ENSAMEG00000020114	PABPC5	100	97.113	Ailuropoda_melanoleuca
ENSPPAG00000007378	PABPC5	100	99.738	ENSANAG00000005063	PABPC5	100	99.738	Aotus_nancymaae
ENSPPAG00000007378	PABPC5	99	96.588	ENSBTAG00000019942	PABPC5	99	96.588	Bos_taurus
ENSPPAG00000007378	PABPC5	100	99.215	ENSCJAG00000003665	PABPC5	100	99.215	Callithrix_jacchus
ENSPPAG00000007378	PABPC5	99	96.588	ENSCAFG00000017452	PABPC5	99	96.588	Canis_familiaris
ENSPPAG00000007378	PABPC5	99	96.588	ENSCHIG00000019004	PABPC5	99	96.588	Capra_hircus
ENSPPAG00000007378	PABPC5	99	97.638	ENSTSYG00000036351	PABPC5	99	97.638	Carlito_syrichta
ENSPPAG00000007378	PABPC5	99	87.895	ENSCAPG00000010714	PABPC5	99	87.895	Cavia_aperea
ENSPPAG00000007378	PABPC5	99	94.226	ENSCPOG00000002555	PABPC5	99	94.226	Cavia_porcellus
ENSPPAG00000007378	PABPC5	100	99.738	ENSCCAG00000032154	PABPC5	100	99.738	Cebus_capucinus
ENSPPAG00000007378	PABPC5	100	99.476	ENSCATG00000043083	PABPC5	100	99.476	Cercocebus_atys
ENSPPAG00000007378	PABPC5	99	95.538	ENSCLAG00000000647	PABPC5	99	95.538	Chinchilla_lanigera
ENSPPAG00000007378	PABPC5	100	99.476	ENSCSAG00000000065	PABPC5	100	99.476	Chlorocebus_sabaeus
ENSPPAG00000007378	PABPC5	100	99.476	ENSCANG00000011473	PABPC5	100	99.476	Colobus_angolensis_palliatus
ENSPPAG00000007378	PABPC5	99	93.963	ENSCGRG00000018699	Pabpc5	99	93.963	Cricetulus_griseus_crigri
ENSPPAG00000007378	PABPC5	99	78.796	ENSETEG00000011832	PABPC5	99	78.796	Echinops_telfairi
ENSPPAG00000007378	PABPC5	99	97.375	ENSEASG00005014396	PABPC5	99	97.375	Equus_asinus_asinus
ENSPPAG00000007378	PABPC5	99	97.375	ENSECAG00000003452	PABPC5	99	97.375	Equus_caballus
ENSPPAG00000007378	PABPC5	99	96.850	ENSFCAG00000004998	PABPC5	99	96.850	Felis_catus
ENSPPAG00000007378	PABPC5	99	96.063	ENSFDAG00000000126	PABPC5	99	96.063	Fukomys_damarensis
ENSPPAG00000007378	PABPC5	100	99.738	ENSGGOG00000007622	PABPC5	100	99.738	Gorilla_gorilla
ENSPPAG00000007378	PABPC5	95	96.313	ENSJJAG00000011960	Pabpc5	99	96.313	Jaculus_jaculus
ENSPPAG00000007378	PABPC5	100	99.476	ENSMFAG00000024561	PABPC5	100	99.476	Macaca_fascicularis
ENSPPAG00000007378	PABPC5	100	99.476	ENSMMUG00000011562	PABPC5	100	99.476	Macaca_mulatta
ENSPPAG00000007378	PABPC5	100	99.476	ENSMNEG00000037604	PABPC5	100	99.476	Macaca_nemestrina
ENSPPAG00000007378	PABPC5	100	99.476	ENSMLEG00000028318	PABPC5	100	99.476	Mandrillus_leucophaeus
ENSPPAG00000007378	PABPC5	99	96.588	ENSMICG00000041706	PABPC5	99	96.588	Microcebus_murinus
ENSPPAG00000007378	PABPC5	99	95.276	ENSMOCG00000001554	Pabpc5	99	95.276	Microtus_ochrogaster
ENSPPAG00000007378	PABPC5	99	94.987	MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	Mus_caroli
ENSPPAG00000007378	PABPC5	99	95.515	ENSMUSG00000034732	Pabpc5	99	95.515	Mus_musculus
ENSPPAG00000007378	PABPC5	99	95.801	MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	Mus_pahari
ENSPPAG00000007378	PABPC5	99	95.515	MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	Mus_spretus
ENSPPAG00000007378	PABPC5	99	96.325	ENSMPUG00000018465	PABPC5	99	96.325	Mustela_putorius_furo
ENSPPAG00000007378	PABPC5	99	95.801	ENSMLUG00000008244	PABPC5	99	95.801	Myotis_lucifugus
ENSPPAG00000007378	PABPC5	95	95.392	ENSNGAG00000004371	Pabpc5	99	95.392	Nannospalax_galili
ENSPPAG00000007378	PABPC5	100	99.738	ENSNLEG00000035086	PABPC5	100	99.738	Nomascus_leucogenys
ENSPPAG00000007378	PABPC5	98	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSPPAG00000007378	PABPC5	99	97.638	ENSOCUG00000010919	PABPC5	99	97.638	Oryctolagus_cuniculus
ENSPPAG00000007378	PABPC5	99	96.850	ENSOGAG00000006882	PABPC5	99	96.850	Otolemur_garnettii
ENSPPAG00000007378	PABPC5	99	96.850	ENSOARG00000010260	PABPC5	99	96.850	Ovis_aries
ENSPPAG00000007378	PABPC5	99	96.850	ENSPPRG00000010742	PABPC5	99	96.850	Panthera_pardus
ENSPPAG00000007378	PABPC5	99	96.850	ENSPTIG00000001480	PABPC5	99	96.850	Panthera_tigris_altaica
ENSPPAG00000007378	PABPC5	100	99.738	ENSPTRG00000022078	PABPC5	100	99.738	Pan_troglodytes
ENSPPAG00000007378	PABPC5	100	99.476	ENSPANG00000018282	PABPC5	100	99.476	Papio_anubis
ENSPPAG00000007378	PABPC5	99	94.751	ENSPEMG00000000171	Pabpc5	99	94.751	Peromyscus_maniculatus_bairdii
ENSPPAG00000007378	PABPC5	100	99.738	ENSPPYG00000020526	PABPC5	100	99.738	Pongo_abelii
ENSPPAG00000007378	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSPPAG00000007378	PABPC5	99	97.375	ENSPCOG00000000676	PABPC5	99	97.375	Propithecus_coquereli
ENSPPAG00000007378	PABPC5	99	97.113	ENSPVAG00000006465	PABPC5	99	97.113	Pteropus_vampyrus
ENSPPAG00000007378	PABPC5	99	95.801	ENSRNOG00000003354	Pabpc5	99	95.801	Rattus_norvegicus
ENSPPAG00000007378	PABPC5	100	99.476	ENSRBIG00000011760	PABPC5	100	99.476	Rhinopithecus_bieti
ENSPPAG00000007378	PABPC5	100	99.476	ENSRROG00000036708	PABPC5	100	99.476	Rhinopithecus_roxellana
ENSPPAG00000007378	PABPC5	100	99.476	ENSSBOG00000008658	PABPC5	100	99.476	Saimiri_boliviensis_boliviensis
ENSPPAG00000007378	PABPC5	99	93.963	ENSSARG00000014012	PABPC5	99	93.963	Sorex_araneus
ENSPPAG00000007378	PABPC5	99	96.588	ENSSSCG00000040194	PABPC5	99	96.588	Sus_scrofa
ENSPPAG00000007378	PABPC5	99	97.900	ENSTBEG00000016482	PABPC5	99	97.900	Tupaia_belangeri
ENSPPAG00000007378	PABPC5	99	96.588	ENSUAMG00000013627	PABPC5	99	96.588	Ursus_americanus
ENSPPAG00000007378	PABPC5	99	96.325	ENSUMAG00000023934	PABPC5	99	96.325	Ursus_maritimus
ENSPPAG00000007378	PABPC5	99	97.113	ENSVPAG00000001063	PABPC5	99	97.113	Vicugna_pacos
ENSPPAG00000007378	PABPC5	99	96.850	ENSVVUG00000013172	PABPC5	99	96.850	Vulpes_vulpes