EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000009288 (Gene tree)
Gene ID: 100971498
Gene Symbol: APOBEC3B
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 9678 bases
Position: chr22:37711588-37721265
Accession: 100971498
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000002130	APOBEC_N	PF08210.11	1e-98	1	2
ENSPPAP00000002130	APOBEC_N	PF08210.11	1e-98	2	2
ENSPPAP00000002122	APOBEC_N	PF08210.11	3e-98	1	2
ENSPPAP00000002122	APOBEC_N	PF08210.11	3e-98	2	2
ENSPPAP00000002130	APOBEC_C	PF05240.14	1.7e-64	1	2
ENSPPAP00000002130	APOBEC_C	PF05240.14	1.7e-64	2	2
ENSPPAP00000002122	APOBEC_C	PF05240.14	4e-64	1	2
ENSPPAP00000002122	APOBEC_C	PF05240.14	4e-64	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000010494	-	1149	-	ENSPPAP00000002130	382 (aa)	-	A0A2R8ZET4
ENSPPAT00000010449	-	1473	-	ENSPPAP00000002122	490 (aa)	-	A0A2R8ZAR6

Gene Model

Click here to download ENSPPAG00000009288's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000009288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000009288	APOBEC3B	96	41.489	ENSPPAG00000038169	AICDA	92	41.489
ENSPPAG00000009288	APOBEC3B	93	30.811	ENSPPAG00000035598	APOBEC2	75	31.720
ENSPPAG00000009288	APOBEC3B	90	34.184	ENSPPAG00000036522	APOBEC3H	100	34.184
ENSPPAG00000009288	APOBEC3B	96	55.891	ENSPPAG00000033277	-	90	59.733
ENSPPAG00000009288	APOBEC3B	98	52.469	ENSPPAG00000028218	-	98	52.469
ENSPPAG00000009288	APOBEC3B	98	51.053	ENSPPAG00000014118	APOBEC3C	100	51.053

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000009288	APOBEC3B	100	94.286	ENSG00000179750	APOBEC3B	100	94.286	Homo_sapiens
ENSPPAG00000009288	APOBEC3B	98	90.674	ENSG00000128383	APOBEC3A	96	90.674	Homo_sapiens
ENSPPAG00000009288	APOBEC3B	99	58.065	ENSCJAG00000012500	-	100	58.065	Callithrix_jacchus
ENSPPAG00000009288	APOBEC3B	99	59.585	ENSTSYG00000035593	-	99	59.585	Carlito_syrichta
ENSPPAG00000009288	APOBEC3B	100	61.917	ENSCCAG00000027450	-	100	61.917	Cebus_capucinus
ENSPPAG00000009288	APOBEC3B	100	85.510	ENSCATG00000013527	-	100	85.510	Cercocebus_atys
ENSPPAG00000009288	APOBEC3B	100	86.735	ENSCSAG00000006445	-	100	86.735	Chlorocebus_sabaeus
ENSPPAG00000009288	APOBEC3B	74	81.633	ENSCSAG00000018401	-	70	81.633	Chlorocebus_sabaeus
ENSPPAG00000009288	APOBEC3B	99	84.021	ENSCANG00000030513	-	97	84.021	Colobus_angolensis_palliatus
ENSPPAG00000009288	APOBEC3B	100	92.932	ENSGGOG00000006721	APOBEC3B	100	92.932	Gorilla_gorilla
ENSPPAG00000009288	APOBEC3B	99	82.984	ENSMFAG00000008980	APOBEC3A	99	82.990	Macaca_fascicularis
ENSPPAG00000009288	APOBEC3B	99	86.243	ENSMMUG00000004015	-	98	86.458	Macaca_mulatta
ENSPPAG00000009288	APOBEC3B	99	83.069	ENSMMUG00000042504	APOBEC3A	97	83.511	Macaca_mulatta
ENSPPAG00000009288	APOBEC3B	99	84.242	ENSMNEG00000043211	-	95	84.242	Macaca_nemestrina
ENSPPAG00000009288	APOBEC3B	100	85.340	ENSMLEG00000004809	-	100	85.340	Mandrillus_leucophaeus
ENSPPAG00000009288	APOBEC3B	98	88.542	ENSNLEG00000015215	-	96	88.542	Nomascus_leucogenys
ENSPPAG00000009288	APOBEC3B	100	88.980	ENSPTRG00000014384	APOBEC3B	100	88.980	Pan_troglodytes
ENSPPAG00000009288	APOBEC3B	99	85.511	ENSPANG00000006941	APOBEC3B	96	82.902	Papio_anubis
ENSPPAG00000009288	APOBEC3B	100	87.696	ENSPPYG00000011831	-	100	87.696	Pongo_abelii
ENSPPAG00000009288	APOBEC3B	76	60.811	ENSPCOG00000017606	-	95	60.811	Propithecus_coquereli
ENSPPAG00000009288	APOBEC3B	100	86.911	ENSRBIG00000042829	-	100	86.911	Rhinopithecus_bieti
ENSPPAG00000009288	APOBEC3B	100	86.911	ENSRROG00000028773	APOBEC3G	100	86.911	Rhinopithecus_roxellana