EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000009836 (Gene tree)
Gene ID: 100995973
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 81722 bases
Position: chr13:19347276-19428997
Accession: 100995973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000002296	RRM_1	PF00076.22	1.3e-32	1	2
ENSPPAP00000002296	RRM_1	PF00076.22	1.3e-32	2	2
ENSPPAP00000002290	RRM_1	PF00076.22	2.7e-32	1	2
ENSPPAP00000002290	RRM_1	PF00076.22	2.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000011271	PSPC1-203	261	-	ENSPPAP00000002303	86 (aa)	-	A0A2R8ZHY0
ENSPPAT00000011245	PSPC1-202	1065	-	ENSPPAP00000002296	354 (aa)	-	A0A2R8ZBP7
ENSPPAT00000011217	PSPC1-201	1332	XM_003832998	ENSPPAP00000002290	443 (aa)	XP_003833046	A0A2R8ZB56

Gene Model

Click here to download ENSPPAG00000009836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000009836's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000009836	PSPC1	77	70.330	ENSPPAG00000041394	-	76	57.593
ENSPPAG00000009836	PSPC1	82	73.973	ENSPPAG00000032487	NONO	87	72.549
ENSPPAG00000009836	PSPC1	89	74.528	ENSPPAG00000030078	SFPQ	50	59.341

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000009836	PSPC1	94	99.094	ENSG00000121390	PSPC1	84	99.094	Homo_sapiens
ENSPPAG00000009836	PSPC1	92	81.173	ENSAPOG00000015946	pspc1	77	72.393	Acanthochromis_polyacanthus
ENSPPAG00000009836	PSPC1	96	96.221	ENSAMEG00000017420	PSPC1	89	92.688	Ailuropoda_melanoleuca
ENSPPAG00000009836	PSPC1	92	72.086	ENSACIG00000018695	pspc1	87	62.389	Amphilophus_citrinellus
ENSPPAG00000009836	PSPC1	92	80.556	ENSAOCG00000005279	pspc1	77	70.482	Amphiprion_ocellaris
ENSPPAG00000009836	PSPC1	92	80.556	ENSAPEG00000015927	pspc1	77	70.482	Amphiprion_percula
ENSPPAG00000009836	PSPC1	92	67.692	ENSATEG00000004878	pspc1	76	65.500	Anabas_testudineus
ENSPPAG00000009836	PSPC1	93	73.716	ENSAPLG00000003643	SFPQ	56	76.125	Anas_platyrhynchos
ENSPPAG00000009836	PSPC1	75	95.506	ENSAPLG00000006246	PSPC1	100	85.891	Anas_platyrhynchos
ENSPPAG00000009836	PSPC1	81	70.732	ENSACAG00000013307	-	55	59.040	Anolis_carolinensis
ENSPPAG00000009836	PSPC1	92	96.626	ENSACAG00000002093	PSPC1	88	84.979	Anolis_carolinensis
ENSPPAG00000009836	PSPC1	98	97.065	ENSANAG00000000059	PSPC1	89	97.065	Aotus_nancymaae
ENSPPAG00000009836	PSPC1	92	72.171	ENSACLG00000027220	pspc1	87	61.233	Astatotilapia_calliptera
ENSPPAG00000009836	PSPC1	91	79.573	ENSAMXG00000036881	pspc1	80	64.598	Astyanax_mexicanus
ENSPPAG00000009836	PSPC1	98	95.111	ENSBTAG00000003934	PSPC1	89	95.111	Bos_taurus
ENSPPAG00000009836	PSPC1	98	98.182	ENSCJAG00000004554	PSPC1	89	98.182	Callithrix_jacchus
ENSPPAG00000009836	PSPC1	93	99.695	ENSCAFG00020002009	PSPC1	84	99.695	Canis_lupus_dingo
ENSPPAG00000009836	PSPC1	95	95.906	ENSCHIG00000016708	PSPC1	89	92.241	Capra_hircus
ENSPPAG00000009836	PSPC1	87	89.951	ENSTSYG00000032882	PSPC1	93	89.951	Carlito_syrichta
ENSPPAG00000009836	PSPC1	97	96.784	ENSCPOG00000000395	PSPC1	88	96.784	Cavia_porcellus
ENSPPAG00000009836	PSPC1	96	97.353	ENSCCAG00000033498	PSPC1	89	92.903	Cebus_capucinus
ENSPPAG00000009836	PSPC1	93	99.695	ENSCATG00000036434	PSPC1	91	99.695	Cercocebus_atys
ENSPPAG00000009836	PSPC1	97	81.425	ENSCLAG00000005241	PSPC1	99	81.425	Chinchilla_lanigera
ENSPPAG00000009836	PSPC1	93	99.085	ENSCHOG00000008913	PSPC1	89	85.193	Choloepus_hoffmanni
ENSPPAG00000009836	PSPC1	93	96.353	ENSCPBG00000020859	PSPC1	90	87.234	Chrysemys_picta_bellii
ENSPPAG00000009836	PSPC1	87	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPPAG00000009836	PSPC1	85	92.800	ENSCANG00000018948	PSPC1	89	100.000	Colobus_angolensis_palliatus
ENSPPAG00000009836	PSPC1	98	95.677	ENSCGRG00001018368	Pspc1	89	92.043	Cricetulus_griseus_chok1gshd
ENSPPAG00000009836	PSPC1	98	95.677	ENSCGRG00000011724	Pspc1	89	92.043	Cricetulus_griseus_crigri
ENSPPAG00000009836	PSPC1	94	77.108	ENSCVAG00000007679	-	64	77.108	Cyprinodon_variegatus
ENSPPAG00000009836	PSPC1	98	76.590	ENSDARG00000006621	pspc1	100	57.488	Danio_rerio
ENSPPAG00000009836	PSPC1	98	95.115	ENSDNOG00000011078	PSPC1	89	91.416	Dasypus_novemcinctus
ENSPPAG00000009836	PSPC1	98	91.379	ENSDORG00000016050	Pspc1	89	88.197	Dipodomys_ordii
ENSPPAG00000009836	PSPC1	54	100.000	ENSETEG00000000502	-	60	100.000	Echinops_telfairi
ENSPPAG00000009836	PSPC1	91	73.538	ENSEBUG00000003964	-	59	73.313	Eptatretus_burgeri
ENSPPAG00000009836	PSPC1	79	48.366	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSPPAG00000009836	PSPC1	94	98.792	ENSEASG00005000119	PSPC1	85	98.792	Equus_asinus_asinus
ENSPPAG00000009836	PSPC1	94	98.792	ENSECAG00000017286	PSPC1	85	98.792	Equus_caballus
ENSPPAG00000009836	PSPC1	90	86.641	ENSEEUG00000011288	-	77	86.923	Erinaceus_europaeus
ENSPPAG00000009836	PSPC1	97	78.324	ENSELUG00000003746	pspc1	79	80.851	Esox_lucius
ENSPPAG00000009836	PSPC1	93	99.695	ENSFCAG00000027841	PSPC1	84	99.695	Felis_catus
ENSPPAG00000009836	PSPC1	93	96.960	ENSFALG00000008750	PSPC1	89	87.660	Ficedula_albicollis
ENSPPAG00000009836	PSPC1	93	99.695	ENSFDAG00000002617	PSPC1	91	91.631	Fukomys_damarensis
ENSPPAG00000009836	PSPC1	85	81.000	ENSGMOG00000015074	pspc1	86	60.907	Gadus_morhua
ENSPPAG00000009836	PSPC1	93	96.960	ENSGALG00000017142	PSPC1	90	87.660	Gallus_gallus
ENSPPAG00000009836	PSPC1	92	78.049	ENSGAFG00000006327	pspc1	68	78.049	Gambusia_affinis
ENSPPAG00000009836	PSPC1	92	74.074	ENSGACG00000014901	pspc1	93	73.273	Gasterosteus_aculeatus
ENSPPAG00000009836	PSPC1	93	96.353	ENSGAGG00000019164	PSPC1	90	87.234	Gopherus_agassizii
ENSPPAG00000009836	PSPC1	94	99.094	ENSGGOG00000003414	PSPC1	84	99.094	Gorilla_gorilla
ENSPPAG00000009836	PSPC1	92	79.321	ENSHBUG00000001139	pspc1	87	63.519	Haplochromis_burtoni
ENSPPAG00000009836	PSPC1	98	95.690	ENSHGLG00000018811	PSPC1	90	91.631	Heterocephalus_glaber_female
ENSPPAG00000009836	PSPC1	82	99.658	ENSHGLG00100007962	PSPC1	89	99.658	Heterocephalus_glaber_male
ENSPPAG00000009836	PSPC1	92	74.154	ENSHCOG00000013251	pspc1	83	63.369	Hippocampus_comes
ENSPPAG00000009836	PSPC1	95	80.233	ENSIPUG00000013192	pspc1	88	67.728	Ictalurus_punctatus
ENSPPAG00000009836	PSPC1	99	95.157	ENSSTOG00000026833	PSPC1	89	95.157	Ictidomys_tridecemlineatus
ENSPPAG00000009836	PSPC1	93	99.085	ENSJJAG00000018334	Pspc1	89	91.828	Jaculus_jaculus
ENSPPAG00000009836	PSPC1	97	54.734	ENSKMAG00000013525	-	84	52.874	Kryptolebias_marmoratus
ENSPPAG00000009836	PSPC1	93	78.354	ENSLBEG00000004474	pspc1	70	78.354	Labrus_bergylta
ENSPPAG00000009836	PSPC1	90	87.227	ENSLACG00000010762	PSPC1	88	78.448	Latimeria_chalumnae
ENSPPAG00000009836	PSPC1	92	87.037	ENSLOCG00000010832	pspc1	91	77.874	Lepisosteus_oculatus
ENSPPAG00000009836	PSPC1	93	99.695	ENSLAFG00000010968	PSPC1	89	92.489	Loxodonta_africana
ENSPPAG00000009836	PSPC1	93	99.390	ENSMFAG00000032728	PSPC1	92	99.390	Macaca_fascicularis
ENSPPAG00000009836	PSPC1	94	99.102	ENSMMUG00000020262	PSPC1	90	98.795	Macaca_mulatta
ENSPPAG00000009836	PSPC1	93	99.390	ENSMNEG00000027401	PSPC1	89	92.688	Macaca_nemestrina
ENSPPAG00000009836	PSPC1	83	91.980	ENSMLEG00000039043	PSPC1	94	91.980	Mandrillus_leucophaeus
ENSPPAG00000009836	PSPC1	92	78.086	ENSMAMG00000004333	pspc1	82	65.000	Mastacembelus_armatus
ENSPPAG00000009836	PSPC1	92	72.171	ENSMZEG00005005726	pspc1	87	61.233	Maylandia_zebra
ENSPPAG00000009836	PSPC1	76	95.167	ENSMGAG00000015134	PSPC1	100	85.714	Meleagris_gallopavo
ENSPPAG00000009836	PSPC1	98	88.184	ENSMAUG00000021067	Pspc1	87	93.130	Mesocricetus_auratus
ENSPPAG00000009836	PSPC1	97	96.512	ENSMICG00000013970	PSPC1	85	99.094	Microcebus_murinus
ENSPPAG00000009836	PSPC1	93	99.390	ENSMOCG00000006060	Pspc1	89	91.828	Microtus_ochrogaster
ENSPPAG00000009836	PSPC1	92	56.615	ENSMMOG00000004352	pspc1	59	53.583	Mola_mola
ENSPPAG00000009836	PSPC1	96	97.059	ENSMODG00000008029	PSPC1	69	90.421	Monodelphis_domestica
ENSPPAG00000009836	PSPC1	92	77.469	ENSMALG00000008914	pspc1	88	61.407	Monopterus_albus
ENSPPAG00000009836	PSPC1	96	96.765	MGP_CAROLIEiJ_G0019341	Pspc1	89	91.631	Mus_caroli
ENSPPAG00000009836	PSPC1	96	96.765	ENSMUSG00000021938	Pspc1	89	91.845	Mus_musculus
ENSPPAG00000009836	PSPC1	96	96.765	MGP_PahariEiJ_G0030359	Pspc1	89	91.631	Mus_pahari
ENSPPAG00000009836	PSPC1	96	96.765	MGP_SPRETEiJ_G0020232	Pspc1	89	91.845	Mus_spretus
ENSPPAG00000009836	PSPC1	93	99.695	ENSMPUG00000013347	PSPC1	89	92.688	Mustela_putorius_furo
ENSPPAG00000009836	PSPC1	98	93.484	ENSMLUG00000017663	PSPC1	90	91.258	Myotis_lucifugus
ENSPPAG00000009836	PSPC1	95	97.640	ENSNGAG00000011271	Pspc1	89	92.043	Nannospalax_galili
ENSPPAG00000009836	PSPC1	92	72.783	ENSNBRG00000014059	pspc1	76	73.333	Neolamprologus_brichardi
ENSPPAG00000009836	PSPC1	93	99.695	ENSNLEG00000001294	PSPC1	89	93.118	Nomascus_leucogenys
ENSPPAG00000009836	PSPC1	80	98.492	ENSMEUG00000000476	PSPC1	75	98.492	Notamacropus_eugenii
ENSPPAG00000009836	PSPC1	93	91.159	ENSODEG00000019012	-	89	83.585	Octodon_degus
ENSPPAG00000009836	PSPC1	98	83.007	ENSODEG00000007817	-	89	82.353	Octodon_degus
ENSPPAG00000009836	PSPC1	92	79.630	ENSONIG00000012010	pspc1	87	62.712	Oreochromis_niloticus
ENSPPAG00000009836	PSPC1	74	99.618	ENSOANG00000009017	-	100	89.975	Ornithorhynchus_anatinus
ENSPPAG00000009836	PSPC1	98	69.401	ENSOANG00000011381	-	92	66.962	Ornithorhynchus_anatinus
ENSPPAG00000009836	PSPC1	93	99.695	ENSOCUG00000006153	PSPC1	89	92.275	Oryctolagus_cuniculus
ENSPPAG00000009836	PSPC1	92	79.012	ENSORLG00000004232	-	88	58.921	Oryzias_latipes
ENSPPAG00000009836	PSPC1	92	77.160	ENSORLG00020000578	PSPC1	87	60.684	Oryzias_latipes_hni
ENSPPAG00000009836	PSPC1	92	79.321	ENSORLG00015017480	pspc1	82	63.551	Oryzias_latipes_hsok
ENSPPAG00000009836	PSPC1	59	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSPPAG00000009836	PSPC1	93	99.695	ENSOGAG00000012643	PSPC1	89	92.903	Otolemur_garnettii
ENSPPAG00000009836	PSPC1	91	98.154	ENSOARG00000014163	PSPC1	100	88.866	Ovis_aries
ENSPPAG00000009836	PSPC1	93	99.695	ENSPPRG00000008833	PSPC1	89	92.903	Panthera_pardus
ENSPPAG00000009836	PSPC1	83	91.729	ENSPTIG00000016917	PSPC1	84	91.729	Panthera_tigris_altaica
ENSPPAG00000009836	PSPC1	96	97.653	ENSPTRG00000005677	PSPC1	88	97.653	Pan_troglodytes
ENSPPAG00000009836	PSPC1	93	99.695	ENSPANG00000001992	PSPC1	90	99.695	Papio_anubis
ENSPPAG00000009836	PSPC1	92	84.615	ENSPKIG00000003578	pspc1	80	71.395	Paramormyrops_kingsleyae
ENSPPAG00000009836	PSPC1	93	96.049	ENSPSIG00000005168	PSPC1	90	87.021	Pelodiscus_sinensis
ENSPPAG00000009836	PSPC1	83	73.220	ENSPMGG00000015135	pspc1	81	73.129	Periophthalmus_magnuspinnatus
ENSPPAG00000009836	PSPC1	96	97.345	ENSPEMG00000015214	Pspc1	89	92.258	Peromyscus_maniculatus_bairdii
ENSPPAG00000009836	PSPC1	79	44.828	ENSPMAG00000004618	pspc1	83	45.788	Petromyzon_marinus
ENSPPAG00000009836	PSPC1	96	97.059	ENSPCIG00000017680	PSPC1	89	91.202	Phascolarctos_cinereus
ENSPPAG00000009836	PSPC1	92	77.812	ENSPFOG00000003362	pspc1	88	61.945	Poecilia_formosa
ENSPPAG00000009836	PSPC1	92	77.812	ENSPLAG00000011540	pspc1	87	61.945	Poecilia_latipinna
ENSPPAG00000009836	PSPC1	92	77.204	ENSPMEG00000008322	pspc1	87	61.522	Poecilia_mexicana
ENSPPAG00000009836	PSPC1	92	76.900	ENSPREG00000007786	pspc1	87	61.522	Poecilia_reticulata
ENSPPAG00000009836	PSPC1	93	99.695	ENSPPYG00000005186	PSPC1	89	92.688	Pongo_abelii
ENSPPAG00000009836	PSPC1	69	100.000	ENSPCAG00000008314	-	56	97.015	Procavia_capensis
ENSPPAG00000009836	PSPC1	97	96.491	ENSPCOG00000014364	PSPC1	88	87.527	Propithecus_coquereli
ENSPPAG00000009836	PSPC1	93	99.085	ENSPVAG00000005036	PSPC1	90	89.032	Pteropus_vampyrus
ENSPPAG00000009836	PSPC1	92	72.171	ENSPNYG00000008893	pspc1	87	59.471	Pundamilia_nyererei
ENSPPAG00000009836	PSPC1	92	81.595	ENSPNAG00000016511	pspc1	89	66.454	Pygocentrus_nattereri
ENSPPAG00000009836	PSPC1	97	96.522	ENSRNOG00000020782	Pspc1	89	92.043	Rattus_norvegicus
ENSPPAG00000009836	PSPC1	99	94.334	ENSRBIG00000036057	PSPC1	93	99.094	Rhinopithecus_bieti
ENSPPAG00000009836	PSPC1	97	96.232	ENSRROG00000036334	PSPC1	84	99.094	Rhinopithecus_roxellana
ENSPPAG00000009836	PSPC1	86	95.561	ENSSBOG00000028172	PSPC1	90	98.182	Saimiri_boliviensis_boliviensis
ENSPPAG00000009836	PSPC1	98	90.812	ENSSHAG00000004696	PSPC1	89	90.812	Sarcophilus_harrisii
ENSPPAG00000009836	PSPC1	92	85.583	ENSSFOG00015001395	pspc1	89	72.792	Scleropages_formosus
ENSPPAG00000009836	PSPC1	96	75.287	ENSSMAG00000001761	pspc1	82	77.108	Scophthalmus_maximus
ENSPPAG00000009836	PSPC1	92	81.173	ENSSDUG00000010651	pspc1	76	67.907	Seriola_dumerili
ENSPPAG00000009836	PSPC1	92	73.926	ENSSLDG00000004284	pspc1	81	62.619	Seriola_lalandi_dorsalis
ENSPPAG00000009836	PSPC1	98	91.183	ENSSARG00000000888	PSPC1	90	90.968	Sorex_araneus
ENSPPAG00000009836	PSPC1	99	84.211	ENSSPUG00000008550	PSPC1	89	83.772	Sphenodon_punctatus
ENSPPAG00000009836	PSPC1	90	66.250	ENSSPUG00000001136	-	56	50.660	Sphenodon_punctatus
ENSPPAG00000009836	PSPC1	92	80.864	ENSSPAG00000001921	pspc1	77	66.279	Stegastes_partitus
ENSPPAG00000009836	PSPC1	93	99.085	ENSSSCG00000009569	PSPC1	86	97.892	Sus_scrofa
ENSPPAG00000009836	PSPC1	93	96.960	ENSTGUG00000011295	PSPC1	100	88.009	Taeniopygia_guttata
ENSPPAG00000009836	PSPC1	92	71.296	ENSTRUG00000011335	pspc1	77	59.756	Takifugu_rubripes
ENSPPAG00000009836	PSPC1	92	73.148	ENSTNIG00000010358	pspc1	84	58.907	Tetraodon_nigroviridis
ENSPPAG00000009836	PSPC1	93	88.415	ENSTBEG00000002361	PSPC1	89	69.247	Tupaia_belangeri
ENSPPAG00000009836	PSPC1	95	96.481	ENSTTRG00000003343	PSPC1	90	92.258	Tursiops_truncatus
ENSPPAG00000009836	PSPC1	86	95.793	ENSUAMG00000012309	PSPC1	84	99.658	Ursus_americanus
ENSPPAG00000009836	PSPC1	98	94.571	ENSUMAG00000013993	PSPC1	92	99.390	Ursus_maritimus
ENSPPAG00000009836	PSPC1	83	91.729	ENSVPAG00000010029	PSPC1	100	91.729	Vicugna_pacos
ENSPPAG00000009836	PSPC1	93	99.696	ENSVVUG00000006414	PSPC1	85	99.696	Vulpes_vulpes
ENSPPAG00000009836	PSPC1	92	77.134	ENSXCOG00000017438	pspc1	78	77.134	Xiphophorus_couchianus
ENSPPAG00000009836	PSPC1	92	77.439	ENSXMAG00000007929	pspc1	78	77.439	Xiphophorus_maculatus