EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000010180 (Gene tree)
Gene ID: 100975490
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 142840 bases
Position: chr3:146930988-147073827
Accession: 100975490
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000002381	XRN_N	PF03159.18	8.8e-96	1	1
ENSPPAP00000002379	XRN_N	PF03159.18	9e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000011544	XRN1-202	10095	XM_003826520	ENSPPAP00000002381	1693 (aa)	XP_003826568	A0A2R8ZBD9
ENSPPAT00000011527	XRN1-201	10142	XM_008951916	ENSPPAP00000002379	1706 (aa)	XP_008950164	A0A2R8ZI65

Gene Model

Click here to download ENSPPAG00000010180's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03008	Ribosome biogenesis in eukaryotes	KEGG
pps03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000010180's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000010180	XRN1	100	99.233	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSPPAG00000010180	XRN1	100	61.525	ENSAPOG00000000622	xrn1	93	76.119	Acanthochromis_polyacanthus
ENSPPAG00000010180	XRN1	100	91.522	ENSAMEG00000012538	XRN1	100	91.522	Ailuropoda_melanoleuca
ENSPPAG00000010180	XRN1	95	72.335	ENSACIG00000001057	xrn1	99	72.498	Amphilophus_citrinellus
ENSPPAG00000010180	XRN1	100	61.038	ENSAOCG00000014097	xrn1	95	69.076	Amphiprion_ocellaris
ENSPPAG00000010180	XRN1	100	60.929	ENSAPEG00000006620	xrn1	98	62.902	Amphiprion_percula
ENSPPAG00000010180	XRN1	94	71.122	ENSATEG00000009752	xrn1	99	71.111	Anabas_testudineus
ENSPPAG00000010180	XRN1	99	76.365	ENSAPLG00000004905	XRN1	100	75.768	Anas_platyrhynchos
ENSPPAG00000010180	XRN1	100	72.523	ENSACAG00000004985	XRN1	100	72.241	Anolis_carolinensis
ENSPPAG00000010180	XRN1	100	96.517	ENSANAG00000029013	XRN1	100	96.517	Aotus_nancymaae
ENSPPAG00000010180	XRN1	100	60.498	ENSACLG00000004806	xrn1	99	60.611	Astatotilapia_calliptera
ENSPPAG00000010180	XRN1	99	60.877	ENSAMXG00000019370	xrn1	96	92.308	Astyanax_mexicanus
ENSPPAG00000010180	XRN1	100	91.974	ENSBTAG00000011524	XRN1	100	91.974	Bos_taurus
ENSPPAG00000010180	XRN1	71	38.749	WBGene00012730	xrn-1	80	38.995	Caenorhabditis_elegans
ENSPPAG00000010180	XRN1	100	96.458	ENSCJAG00000001872	XRN1	100	96.458	Callithrix_jacchus
ENSPPAG00000010180	XRN1	100	93.029	ENSCAFG00000007783	XRN1	100	93.029	Canis_familiaris
ENSPPAG00000010180	XRN1	100	91.912	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSPPAG00000010180	XRN1	99	89.994	ENSCHIG00000019192	XRN1	99	89.994	Capra_hircus
ENSPPAG00000010180	XRN1	100	93.923	ENSTSYG00000002705	XRN1	100	93.923	Carlito_syrichta
ENSPPAG00000010180	XRN1	56	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSPPAG00000010180	XRN1	100	96.812	ENSCCAG00000034800	XRN1	99	98.098	Cebus_capucinus
ENSPPAG00000010180	XRN1	100	97.657	ENSCATG00000041794	XRN1	100	97.657	Cercocebus_atys
ENSPPAG00000010180	XRN1	100	87.882	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSPPAG00000010180	XRN1	100	97.657	ENSCSAG00000011265	XRN1	100	97.657	Chlorocebus_sabaeus
ENSPPAG00000010180	XRN1	58	97.403	ENSCHOG00000013961	-	59	97.403	Choloepus_hoffmanni
ENSPPAG00000010180	XRN1	70	45.083	ENSCSAVG00000008584	-	98	44.917	Ciona_savignyi
ENSPPAG00000010180	XRN1	100	97.698	ENSCANG00000037495	XRN1	100	97.698	Colobus_angolensis_palliatus
ENSPPAG00000010180	XRN1	100	87.688	ENSCGRG00001019411	Xrn1	99	95.404	Cricetulus_griseus_chok1gshd
ENSPPAG00000010180	XRN1	100	87.688	ENSCGRG00000012464	Xrn1	99	95.404	Cricetulus_griseus_crigri
ENSPPAG00000010180	XRN1	100	55.914	ENSCSEG00000021285	xrn1	94	94.231	Cynoglossus_semilaevis
ENSPPAG00000010180	XRN1	67	67.368	ENSCVAG00000013089	xrn1	99	71.693	Cyprinodon_variegatus
ENSPPAG00000010180	XRN1	99	63.454	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSPPAG00000010180	XRN1	100	86.856	ENSDORG00000013833	Xrn1	100	86.856	Dipodomys_ordii
ENSPPAG00000010180	XRN1	75	39.938	FBgn0020261	pcm	76	39.846	Drosophila_melanogaster
ENSPPAG00000010180	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSPPAG00000010180	XRN1	100	92.970	ENSEASG00005002687	XRN1	99	95.404	Equus_asinus_asinus
ENSPPAG00000010180	XRN1	100	92.970	ENSECAG00000008301	XRN1	100	92.970	Equus_caballus
ENSPPAG00000010180	XRN1	92	82.600	ENSEEUG00000011323	XRN1	92	82.600	Erinaceus_europaeus
ENSPPAG00000010180	XRN1	100	61.446	ENSELUG00000000169	xrn1	100	61.538	Esox_lucius
ENSPPAG00000010180	XRN1	100	89.110	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSPPAG00000010180	XRN1	100	75.070	ENSFALG00000007021	XRN1	100	74.496	Ficedula_albicollis
ENSPPAG00000010180	XRN1	100	88.863	ENSFDAG00000020494	XRN1	99	95.246	Fukomys_damarensis
ENSPPAG00000010180	XRN1	84	68.285	ENSGMOG00000006396	xrn1	83	68.285	Gadus_morhua
ENSPPAG00000010180	XRN1	100	75.239	ENSGALG00000002706	XRN1	100	74.831	Gallus_gallus
ENSPPAG00000010180	XRN1	100	59.863	ENSGACG00000014328	xrn1	100	60.216	Gasterosteus_aculeatus
ENSPPAG00000010180	XRN1	95	78.240	ENSGAGG00000017535	XRN1	99	78.240	Gopherus_agassizii
ENSPPAG00000010180	XRN1	100	99.121	ENSGGOG00000008047	XRN1	100	99.121	Gorilla_gorilla
ENSPPAG00000010180	XRN1	100	60.824	ENSHBUG00000005908	xrn1	98	72.485	Haplochromis_burtoni
ENSPPAG00000010180	XRN1	100	89.908	ENSHGLG00000014476	XRN1	99	96.197	Heterocephalus_glaber_female
ENSPPAG00000010180	XRN1	100	89.908	ENSHGLG00100015130	XRN1	99	96.197	Heterocephalus_glaber_male
ENSPPAG00000010180	XRN1	98	69.542	ENSHCOG00000014062	xrn1	99	69.688	Hippocampus_comes
ENSPPAG00000010180	XRN1	99	62.579	ENSIPUG00000015229	xrn1	99	62.772	Ictalurus_punctatus
ENSPPAG00000010180	XRN1	100	91.397	ENSSTOG00000013552	XRN1	99	96.989	Ictidomys_tridecemlineatus
ENSPPAG00000010180	XRN1	98	86.467	ENSJJAG00000010863	Xrn1	99	93.413	Jaculus_jaculus
ENSPPAG00000010180	XRN1	94	61.426	ENSKMAG00000021356	xrn1	94	75.527	Kryptolebias_marmoratus
ENSPPAG00000010180	XRN1	100	60.604	ENSLBEG00000018656	xrn1	97	95.146	Labrus_bergylta
ENSPPAG00000010180	XRN1	100	69.818	ENSLACG00000009020	XRN1	100	69.778	Latimeria_chalumnae
ENSPPAG00000010180	XRN1	100	65.727	ENSLOCG00000007944	xrn1	100	65.727	Lepisosteus_oculatus
ENSPPAG00000010180	XRN1	63	95.884	ENSLAFG00000015426	XRN1	100	95.884	Loxodonta_africana
ENSPPAG00000010180	XRN1	100	97.657	ENSMFAG00000032599	XRN1	100	97.657	Macaca_fascicularis
ENSPPAG00000010180	XRN1	100	97.715	ENSMMUG00000014038	XRN1	100	97.715	Macaca_mulatta
ENSPPAG00000010180	XRN1	100	97.598	ENSMNEG00000034217	XRN1	100	97.598	Macaca_nemestrina
ENSPPAG00000010180	XRN1	94	70.955	ENSMAMG00000013219	xrn1	94	76.907	Mastacembelus_armatus
ENSPPAG00000010180	XRN1	100	60.147	ENSMZEG00005015099	xrn1	99	60.498	Maylandia_zebra
ENSPPAG00000010180	XRN1	99	75.116	ENSMGAG00000006333	XRN1	100	74.521	Meleagris_gallopavo
ENSPPAG00000010180	XRN1	100	94.111	ENSMICG00000048948	XRN1	96	99.029	Microcebus_murinus
ENSPPAG00000010180	XRN1	58	94.295	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSPPAG00000010180	XRN1	100	82.380	ENSMODG00000021236	XRN1	100	82.253	Monodelphis_domestica
ENSPPAG00000010180	XRN1	100	57.910	ENSMALG00000004098	xrn1	100	57.797	Monopterus_albus
ENSPPAG00000010180	XRN1	96	94.471	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSPPAG00000010180	XRN1	100	86.416	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSPPAG00000010180	XRN1	100	86.416	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSPPAG00000010180	XRN1	100	86.358	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSPPAG00000010180	XRN1	100	93.322	ENSMPUG00000012040	XRN1	100	93.322	Mustela_putorius_furo
ENSPPAG00000010180	XRN1	100	88.972	ENSMLUG00000016885	XRN1	100	88.972	Myotis_lucifugus
ENSPPAG00000010180	XRN1	58	91.143	ENSNGAG00000023964	Xrn1	99	91.143	Nannospalax_galili
ENSPPAG00000010180	XRN1	100	98.288	ENSNLEG00000004726	XRN1	100	98.288	Nomascus_leucogenys
ENSPPAG00000010180	XRN1	80	97.938	ENSMEUG00000014473	-	80	98.058	Notamacropus_eugenii
ENSPPAG00000010180	XRN1	79	84.160	ENSOPRG00000007337	-	78	84.160	Ochotona_princeps
ENSPPAG00000010180	XRN1	100	61.420	ENSONIG00000016673	xrn1	99	64.774	Oreochromis_niloticus
ENSPPAG00000010180	XRN1	92	77.890	ENSOANG00000006735	XRN1	100	77.701	Ornithorhynchus_anatinus
ENSPPAG00000010180	XRN1	100	90.258	ENSOCUG00000001861	XRN1	100	90.258	Oryctolagus_cuniculus
ENSPPAG00000010180	XRN1	100	61.042	ENSORLG00000013005	xrn1	100	60.790	Oryzias_latipes
ENSPPAG00000010180	XRN1	100	61.399	ENSORLG00020005559	xrn1	100	61.477	Oryzias_latipes_hni
ENSPPAG00000010180	XRN1	100	61.035	ENSORLG00015022523	xrn1	100	60.894	Oryzias_latipes_hsok
ENSPPAG00000010180	XRN1	92	72.779	ENSOMEG00000015397	xrn1	99	72.698	Oryzias_melastigma
ENSPPAG00000010180	XRN1	100	90.867	ENSOGAG00000000170	XRN1	100	91.042	Otolemur_garnettii
ENSPPAG00000010180	XRN1	99	92.375	ENSOARG00000006343	XRN1	99	92.375	Ovis_aries
ENSPPAG00000010180	XRN1	100	93.451	ENSPPRG00000007125	XRN1	100	93.451	Panthera_pardus
ENSPPAG00000010180	XRN1	100	93.510	ENSPTIG00000021081	XRN1	100	93.510	Panthera_tigris_altaica
ENSPPAG00000010180	XRN1	100	99.883	ENSPTRG00000015482	XRN1	100	99.883	Pan_troglodytes
ENSPPAG00000010180	XRN1	100	97.598	ENSPANG00000010638	XRN1	100	97.598	Papio_anubis
ENSPPAG00000010180	XRN1	100	76.927	ENSPSIG00000018050	XRN1	100	76.857	Pelodiscus_sinensis
ENSPPAG00000010180	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSPPAG00000010180	XRN1	58	95.087	ENSPEMG00000020610	Xrn1	99	95.087	Peromyscus_maniculatus_bairdii
ENSPPAG00000010180	XRN1	65	50.549	ENSPMAG00000002975	xrn1	91	77.874	Petromyzon_marinus
ENSPPAG00000010180	XRN1	100	81.808	ENSPCIG00000028735	XRN1	99	89.841	Phascolarctos_cinereus
ENSPPAG00000010180	XRN1	91	64.502	ENSPFOG00000013932	xrn1	99	64.801	Poecilia_formosa
ENSPPAG00000010180	XRN1	91	63.318	ENSPLAG00000021653	xrn1	99	64.140	Poecilia_latipinna
ENSPPAG00000010180	XRN1	89	64.221	ENSPMEG00000003076	xrn1	95	64.671	Poecilia_mexicana
ENSPPAG00000010180	XRN1	100	60.579	ENSPREG00000021147	xrn1	100	61.254	Poecilia_reticulata
ENSPPAG00000010180	XRN1	100	98.360	ENSPPYG00000014172	XRN1	100	98.360	Pongo_abelii
ENSPPAG00000010180	XRN1	91	81.801	ENSPCAG00000005638	XRN1	100	81.801	Procavia_capensis
ENSPPAG00000010180	XRN1	100	94.454	ENSPCOG00000013089	XRN1	99	96.999	Propithecus_coquereli
ENSPPAG00000010180	XRN1	96	92.114	ENSPVAG00000016265	XRN1	96	92.114	Pteropus_vampyrus
ENSPPAG00000010180	XRN1	100	60.585	ENSPNYG00000010570	xrn1	99	60.970	Pundamilia_nyererei
ENSPPAG00000010180	XRN1	99	60.807	ENSPNAG00000023531	xrn1	99	60.807	Pygocentrus_nattereri
ENSPPAG00000010180	XRN1	100	86.936	ENSRNOG00000042951	Xrn1	100	86.936	Rattus_norvegicus
ENSPPAG00000010180	XRN1	100	97.188	ENSRBIG00000041227	XRN1	100	97.188	Rhinopithecus_bieti
ENSPPAG00000010180	XRN1	67	54.223	YGL173C	XRN1	81	34.513	Saccharomyces_cerevisiae
ENSPPAG00000010180	XRN1	100	96.281	ENSSBOG00000029561	XRN1	100	96.281	Saimiri_boliviensis_boliviensis
ENSPPAG00000010180	XRN1	99	81.797	ENSSHAG00000016207	XRN1	100	81.587	Sarcophilus_harrisii
ENSPPAG00000010180	XRN1	100	60.794	ENSSFOG00015024211	xrn1	100	61.118	Scleropages_formosus
ENSPPAG00000010180	XRN1	94	72.375	ENSSMAG00000016534	xrn1	98	72.375	Scophthalmus_maximus
ENSPPAG00000010180	XRN1	90	72.254	ENSSDUG00000010306	xrn1	97	72.101	Seriola_dumerili
ENSPPAG00000010180	XRN1	96	70.584	ENSSLDG00000021543	xrn1	100	71.667	Seriola_lalandi_dorsalis
ENSPPAG00000010180	XRN1	68	85.021	ENSSARG00000007741	-	83	85.021	Sorex_araneus
ENSPPAG00000010180	XRN1	100	77.307	ENSTGUG00000008498	XRN1	100	76.767	Taeniopygia_guttata
ENSPPAG00000010180	XRN1	100	59.030	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSPPAG00000010180	XRN1	96	68.526	ENSTNIG00000017615	xrn1	100	59.214	Tetraodon_nigroviridis
ENSPPAG00000010180	XRN1	84	97.035	ENSTBEG00000003256	XRN1	89	86.762	Tupaia_belangeri
ENSPPAG00000010180	XRN1	100	88.811	ENSTTRG00000012914	XRN1	100	88.811	Tursiops_truncatus
ENSPPAG00000010180	XRN1	100	92.447	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSPPAG00000010180	XRN1	100	94.379	ENSUMAG00000013625	XRN1	100	94.379	Ursus_maritimus
ENSPPAG00000010180	XRN1	100	90.217	ENSVPAG00000004690	XRN1	100	90.217	Vicugna_pacos
ENSPPAG00000010180	XRN1	100	93.966	ENSVVUG00000024461	XRN1	99	96.513	Vulpes_vulpes
ENSPPAG00000010180	XRN1	100	69.298	ENSXETG00000000619	xrn1	97	88.710	Xenopus_tropicalis
ENSPPAG00000010180	XRN1	100	61.476	ENSXCOG00000007917	xrn1	100	61.410	Xiphophorus_couchianus
ENSPPAG00000010180	XRN1	92	71.964	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus