EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000011996 (Gene tree)
Gene ID: 100975351
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 33467 bases
Position: chr1:135422268-135455734
Accession: 100975351
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000002763	EST1	PF10374.9	1.2e-23	1	1
ENSPPAP00000002763	EST1_DNA_bind	PF10373.9	1.2e-39	1	2
ENSPPAP00000002763	EST1_DNA_bind	PF10373.9	1.2e-39	2	2
ENSPPAP00000002763	PIN_4	PF13638.6	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000013122	SMG5-201	4620	XM_003821053	ENSPPAP00000002763	1016 (aa)	XP_003821101	A0A2R8ZGF6

Gene Model

Click here to download ENSPPAG00000011996's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000011996's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000011996	SMG5	100	99.409	ENSG00000198952	SMG5	100	99.409	Homo_sapiens
ENSPPAG00000011996	SMG5	99	67.549	ENSAPOG00000019690	smg5	92	76.869	Acanthochromis_polyacanthus
ENSPPAG00000011996	SMG5	98	92.548	ENSAMEG00000014458	SMG5	100	92.548	Ailuropoda_melanoleuca
ENSPPAG00000011996	SMG5	99	64.847	ENSACIG00000001353	smg5	99	66.571	Amphilophus_citrinellus
ENSPPAG00000011996	SMG5	98	64.631	ENSAOCG00000019483	smg5	93	66.496	Amphiprion_ocellaris
ENSPPAG00000011996	SMG5	98	66.269	ENSAPEG00000022949	smg5	98	66.235	Amphiprion_percula
ENSPPAG00000011996	SMG5	99	65.800	ENSATEG00000005348	smg5	99	67.216	Anabas_testudineus
ENSPPAG00000011996	SMG5	98	78.829	ENSAPLG00000010263	SMG5	100	78.537	Anas_platyrhynchos
ENSPPAG00000011996	SMG5	100	97.933	ENSANAG00000032899	SMG5	100	97.933	Aotus_nancymaae
ENSPPAG00000011996	SMG5	99	64.491	ENSACLG00000009311	smg5	99	66.025	Astatotilapia_calliptera
ENSPPAG00000011996	SMG5	100	95.866	ENSBTAG00000009435	SMG5	100	95.866	Bos_taurus
ENSPPAG00000011996	SMG5	99	44.294	ENSBTAG00000021747	-	99	43.424	Bos_taurus
ENSPPAG00000011996	SMG5	100	97.933	ENSCJAG00000005684	SMG5	100	97.933	Callithrix_jacchus
ENSPPAG00000011996	SMG5	100	94.291	ENSCAFG00000016839	SMG5	100	93.602	Canis_familiaris
ENSPPAG00000011996	SMG5	100	94.291	ENSCAFG00020006061	SMG5	100	93.602	Canis_lupus_dingo
ENSPPAG00000011996	SMG5	100	95.768	ENSCHIG00000007709	SMG5	100	95.768	Capra_hircus
ENSPPAG00000011996	SMG5	99	44.906	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSPPAG00000011996	SMG5	100	96.853	ENSTSYG00000004099	SMG5	100	96.853	Carlito_syrichta
ENSPPAG00000011996	SMG5	97	74.442	ENSCAPG00000003631	SMG5	100	75.078	Cavia_aperea
ENSPPAG00000011996	SMG5	100	95.678	ENSCPOG00000015696	SMG5	100	95.383	Cavia_porcellus
ENSPPAG00000011996	SMG5	100	97.933	ENSCCAG00000027409	SMG5	100	97.933	Cebus_capucinus
ENSPPAG00000011996	SMG5	100	99.016	ENSCATG00000030539	SMG5	100	99.016	Cercocebus_atys
ENSPPAG00000011996	SMG5	100	96.365	ENSCLAG00000003983	SMG5	100	96.365	Chinchilla_lanigera
ENSPPAG00000011996	SMG5	100	98.917	ENSCSAG00000002120	SMG5	100	98.917	Chlorocebus_sabaeus
ENSPPAG00000011996	SMG5	54	93.796	ENSCHOG00000008741	-	57	93.796	Choloepus_hoffmanni
ENSPPAG00000011996	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSPPAG00000011996	SMG5	93	35.191	ENSCING00000008706	-	99	35.216	Ciona_intestinalis
ENSPPAG00000011996	SMG5	100	94.882	ENSCANG00000029208	SMG5	100	94.882	Colobus_angolensis_palliatus
ENSPPAG00000011996	SMG5	100	92.534	ENSCGRG00001006336	Smg5	100	92.240	Cricetulus_griseus_chok1gshd
ENSPPAG00000011996	SMG5	98	92.555	ENSCGRG00000005111	Smg5	100	92.246	Cricetulus_griseus_crigri
ENSPPAG00000011996	SMG5	99	65.306	ENSCSEG00000014220	smg5	92	77.305	Cynoglossus_semilaevis
ENSPPAG00000011996	SMG5	99	60.819	ENSCVAG00000000529	smg5	99	61.516	Cyprinodon_variegatus
ENSPPAG00000011996	SMG5	92	36.786	ENSDNOG00000039862	-	100	35.344	Dasypus_novemcinctus
ENSPPAG00000011996	SMG5	100	91.634	ENSDNOG00000000051	SMG5	100	91.634	Dasypus_novemcinctus
ENSPPAG00000011996	SMG5	100	94.008	ENSDORG00000010382	Smg5	100	93.320	Dipodomys_ordii
ENSPPAG00000011996	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSPPAG00000011996	SMG5	82	97.087	ENSETEG00000010336	SMG5	83	97.087	Echinops_telfairi
ENSPPAG00000011996	SMG5	90	46.709	ENSEBUG00000003739	smg5	98	46.324	Eptatretus_burgeri
ENSPPAG00000011996	SMG5	100	97.047	ENSEASG00005019122	SMG5	100	97.047	Equus_asinus_asinus
ENSPPAG00000011996	SMG5	100	97.047	ENSECAG00000001389	SMG5	100	97.047	Equus_caballus
ENSPPAG00000011996	SMG5	72	97.695	ENSEEUG00000012690	SMG5	73	97.695	Erinaceus_europaeus
ENSPPAG00000011996	SMG5	99	65.255	ENSELUG00000012585	smg5	99	65.159	Esox_lucius
ENSPPAG00000011996	SMG5	100	93.799	ENSFCAG00000011783	SMG5	100	93.019	Felis_catus
ENSPPAG00000011996	SMG5	58	81.469	ENSFALG00000001166	-	99	81.575	Ficedula_albicollis
ENSPPAG00000011996	SMG5	98	92.951	ENSFDAG00000017388	SMG5	100	92.850	Fukomys_damarensis
ENSPPAG00000011996	SMG5	97	62.059	ENSFHEG00000013939	smg5	95	68.301	Fundulus_heteroclitus
ENSPPAG00000011996	SMG5	99	61.702	ENSGMOG00000007310	smg5	92	76.376	Gadus_morhua
ENSPPAG00000011996	SMG5	99	77.714	ENSGALG00000029918	-	100	77.419	Gallus_gallus
ENSPPAG00000011996	SMG5	86	75.339	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSPPAG00000011996	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSPPAG00000011996	SMG5	100	99.114	ENSGGOG00000010932	SMG5	100	99.114	Gorilla_gorilla
ENSPPAG00000011996	SMG5	99	64.211	ENSHBUG00000008654	smg5	99	65.176	Haplochromis_burtoni
ENSPPAG00000011996	SMG5	100	92.829	ENSHGLG00000019152	SMG5	100	93.026	Heterocephalus_glaber_female
ENSPPAG00000011996	SMG5	90	92.881	ENSHGLG00100015948	SMG5	99	93.100	Heterocephalus_glaber_male
ENSPPAG00000011996	SMG5	86	73.105	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSPPAG00000011996	SMG5	99	60.471	ENSIPUG00000006624	Smg5	99	61.987	Ictalurus_punctatus
ENSPPAG00000011996	SMG5	100	96.362	ENSSTOG00000001780	SMG5	100	96.362	Ictidomys_tridecemlineatus
ENSPPAG00000011996	SMG5	100	92.640	ENSJJAG00000022763	Smg5	100	92.444	Jaculus_jaculus
ENSPPAG00000011996	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.244	Kryptolebias_marmoratus
ENSPPAG00000011996	SMG5	99	66.056	ENSLBEG00000002145	smg5	92	78.066	Labrus_bergylta
ENSPPAG00000011996	SMG5	100	65.052	ENSLACG00000010521	SMG5	100	64.957	Latimeria_chalumnae
ENSPPAG00000011996	SMG5	96	78.404	ENSLOCG00000008380	smg5	92	78.436	Lepisosteus_oculatus
ENSPPAG00000011996	SMG5	100	94.390	ENSLAFG00000006241	SMG5	100	94.390	Loxodonta_africana
ENSPPAG00000011996	SMG5	100	98.917	ENSMFAG00000045357	SMG5	100	98.917	Macaca_fascicularis
ENSPPAG00000011996	SMG5	100	98.819	ENSMMUG00000000090	SMG5	100	98.819	Macaca_mulatta
ENSPPAG00000011996	SMG5	100	98.819	ENSMNEG00000044425	SMG5	100	98.819	Macaca_nemestrina
ENSPPAG00000011996	SMG5	100	92.647	ENSMLEG00000041192	SMG5	100	92.647	Mandrillus_leucophaeus
ENSPPAG00000011996	SMG5	99	60.928	ENSMAMG00000010683	smg5	58	56.863	Mastacembelus_armatus
ENSPPAG00000011996	SMG5	99	63.645	ENSMZEG00005015815	smg5	99	64.689	Maylandia_zebra
ENSPPAG00000011996	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.125	Maylandia_zebra
ENSPPAG00000011996	SMG5	100	91.847	ENSMAUG00000010381	Smg5	100	91.650	Mesocricetus_auratus
ENSPPAG00000011996	SMG5	55	45.534	ENSMAUG00000000043	-	96	44.618	Mesocricetus_auratus
ENSPPAG00000011996	SMG5	100	97.244	ENSMICG00000002257	SMG5	100	97.244	Microcebus_murinus
ENSPPAG00000011996	SMG5	100	91.275	ENSMOCG00000016590	Smg5	100	90.882	Microtus_ochrogaster
ENSPPAG00000011996	SMG5	99	59.409	ENSMMOG00000017199	smg5	99	59.266	Mola_mola
ENSPPAG00000011996	SMG5	87	90.203	ENSMODG00000016901	SMG5	98	90.653	Monodelphis_domestica
ENSPPAG00000011996	SMG5	93	37.317	ENSMODG00000004532	-	83	37.688	Monodelphis_domestica
ENSPPAG00000011996	SMG5	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSPPAG00000011996	SMG5	97	34.891	ENSMODG00000004511	-	99	34.158	Monodelphis_domestica
ENSPPAG00000011996	SMG5	75	39.633	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSPPAG00000011996	SMG5	99	60.444	ENSMALG00000010375	smg5	99	59.325	Monopterus_albus
ENSPPAG00000011996	SMG5	100	92.240	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSPPAG00000011996	SMG5	100	92.436	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSPPAG00000011996	SMG5	100	92.051	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSPPAG00000011996	SMG5	100	92.240	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSPPAG00000011996	SMG5	94	92.737	ENSMPUG00000004546	SMG5	100	92.000	Mustela_putorius_furo
ENSPPAG00000011996	SMG5	100	94.716	ENSMLUG00000008518	SMG5	100	93.836	Myotis_lucifugus
ENSPPAG00000011996	SMG5	100	93.904	ENSNGAG00000020706	Smg5	100	93.609	Nannospalax_galili
ENSPPAG00000011996	SMG5	98	44.578	ENSNGAG00000012101	-	98	44.389	Nannospalax_galili
ENSPPAG00000011996	SMG5	97	63.063	ENSNBRG00000004332	smg5	98	65.196	Neolamprologus_brichardi
ENSPPAG00000011996	SMG5	100	98.819	ENSNLEG00000012439	SMG5	100	98.819	Nomascus_leucogenys
ENSPPAG00000011996	SMG5	100	88.201	ENSMEUG00000012834	SMG5	100	87.316	Notamacropus_eugenii
ENSPPAG00000011996	SMG5	100	94.193	ENSOPRG00000009152	SMG5	100	94.193	Ochotona_princeps
ENSPPAG00000011996	SMG5	100	95.669	ENSODEG00000012237	SMG5	100	95.669	Octodon_degus
ENSPPAG00000011996	SMG5	89	40.591	ENSOCUG00000023338	-	99	40.481	Oryctolagus_cuniculus
ENSPPAG00000011996	SMG5	98	95.565	ENSOCUG00000012886	SMG5	100	95.565	Oryctolagus_cuniculus
ENSPPAG00000011996	SMG5	91	76.667	ENSORLG00000016239	smg5	99	61.948	Oryzias_latipes
ENSPPAG00000011996	SMG5	99	64.230	ENSORLG00020013127	smg5	99	65.887	Oryzias_latipes_hni
ENSPPAG00000011996	SMG5	99	64.140	ENSORLG00015019014	smg5	99	65.534	Oryzias_latipes_hsok
ENSPPAG00000011996	SMG5	100	94.980	ENSOGAG00000004966	SMG5	100	94.980	Otolemur_garnettii
ENSPPAG00000011996	SMG5	100	95.866	ENSOARG00000005778	SMG5	100	95.866	Ovis_aries
ENSPPAG00000011996	SMG5	99	44.575	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSPPAG00000011996	SMG5	98	93.649	ENSPPRG00000011901	SMG5	100	92.843	Panthera_pardus
ENSPPAG00000011996	SMG5	99	85.473	ENSPTIG00000007892	SMG5	98	85.324	Panthera_tigris_altaica
ENSPPAG00000011996	SMG5	100	99.803	ENSPTRG00000049282	-	100	99.803	Pan_troglodytes
ENSPPAG00000011996	SMG5	100	99.803	ENSPTRG00000023925	SMG5	100	99.803	Pan_troglodytes
ENSPPAG00000011996	SMG5	100	99.016	ENSPANG00000011201	SMG5	100	99.016	Papio_anubis
ENSPPAG00000011996	SMG5	99	65.318	ENSPKIG00000009402	smg5	99	65.567	Paramormyrops_kingsleyae
ENSPPAG00000011996	SMG5	98	80.834	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSPPAG00000011996	SMG5	99	60.331	ENSPMGG00000010465	smg5	99	59.686	Periophthalmus_magnuspinnatus
ENSPPAG00000011996	SMG5	56	46.060	ENSPEMG00000010022	-	95	45.017	Peromyscus_maniculatus_bairdii
ENSPPAG00000011996	SMG5	100	92.829	ENSPEMG00000001819	Smg5	100	92.534	Peromyscus_maniculatus_bairdii
ENSPPAG00000011996	SMG5	99	49.324	ENSPMAG00000000410	smg5	100	49.430	Petromyzon_marinus
ENSPPAG00000011996	SMG5	100	89.686	ENSPCIG00000018938	SMG5	100	90.079	Phascolarctos_cinereus
ENSPPAG00000011996	SMG5	50	60.405	ENSPFOG00000010191	smg5	99	62.177	Poecilia_formosa
ENSPPAG00000011996	SMG5	50	60.482	ENSPLAG00000009332	smg5	99	61.998	Poecilia_latipinna
ENSPPAG00000011996	SMG5	99	65.610	ENSPMEG00000014105	smg5	99	65.296	Poecilia_mexicana
ENSPPAG00000011996	SMG5	93	75.566	ENSPREG00000017713	smg5	99	61.820	Poecilia_reticulata
ENSPPAG00000011996	SMG5	100	99.508	ENSPPYG00000000723	SMG5	100	99.508	Pongo_abelii
ENSPPAG00000011996	SMG5	75	97.238	ENSPCAG00000008412	SMG5	88	85.654	Procavia_capensis
ENSPPAG00000011996	SMG5	100	97.146	ENSPCOG00000004741	SMG5	100	97.146	Propithecus_coquereli
ENSPPAG00000011996	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSPPAG00000011996	SMG5	93	63.657	ENSPNYG00000013397	smg5	99	60.973	Pundamilia_nyererei
ENSPPAG00000011996	SMG5	100	92.436	ENSRNOG00000019590	Smg5	100	92.141	Rattus_norvegicus
ENSPPAG00000011996	SMG5	100	98.720	ENSRBIG00000027428	SMG5	100	98.720	Rhinopithecus_bieti
ENSPPAG00000011996	SMG5	100	98.622	ENSRROG00000030035	SMG5	100	98.622	Rhinopithecus_roxellana
ENSPPAG00000011996	SMG5	100	97.933	ENSSBOG00000033339	SMG5	100	97.933	Saimiri_boliviensis_boliviensis
ENSPPAG00000011996	SMG5	99	34.294	ENSSHAG00000009572	-	80	42.998	Sarcophilus_harrisii
ENSPPAG00000011996	SMG5	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSPPAG00000011996	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSPPAG00000011996	SMG5	98	89.289	ENSSHAG00000014163	SMG5	100	89.690	Sarcophilus_harrisii
ENSPPAG00000011996	SMG5	99	66.440	ENSSFOG00015024175	smg5	99	66.341	Scleropages_formosus
ENSPPAG00000011996	SMG5	99	60.781	ENSSMAG00000013059	smg5	99	62.333	Scophthalmus_maximus
ENSPPAG00000011996	SMG5	50	60.145	ENSSDUG00000007122	smg5	92	76.636	Seriola_dumerili
ENSPPAG00000011996	SMG5	97	60.627	ENSSLDG00000011418	smg5	96	61.683	Seriola_lalandi_dorsalis
ENSPPAG00000011996	SMG5	90	81.025	ENSSARG00000012484	SMG5	100	81.025	Sorex_araneus
ENSPPAG00000011996	SMG5	94	77.508	ENSSPUG00000002260	SMG5	100	76.596	Sphenodon_punctatus
ENSPPAG00000011996	SMG5	91	76.347	ENSSPAG00000014266	smg5	99	65.255	Stegastes_partitus
ENSPPAG00000011996	SMG5	100	96.949	ENSSSCG00000006490	-	100	96.949	Sus_scrofa
ENSPPAG00000011996	SMG5	99	75.074	ENSSSCG00000039308	-	100	75.271	Sus_scrofa
ENSPPAG00000011996	SMG5	99	80.415	ENSTGUG00000003748	-	100	80.176	Taeniopygia_guttata
ENSPPAG00000011996	SMG5	99	64.672	ENSTRUG00000012580	smg5	99	64.575	Takifugu_rubripes
ENSPPAG00000011996	SMG5	99	65.407	ENSTNIG00000010303	smg5	99	65.179	Tetraodon_nigroviridis
ENSPPAG00000011996	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSPPAG00000011996	SMG5	100	91.634	ENSTTRG00000001401	SMG5	100	91.634	Tursiops_truncatus
ENSPPAG00000011996	SMG5	100	93.406	ENSUAMG00000013721	SMG5	100	92.717	Ursus_americanus
ENSPPAG00000011996	SMG5	98	89.045	ENSUMAG00000018041	SMG5	97	88.342	Ursus_maritimus
ENSPPAG00000011996	SMG5	98	86.882	ENSVPAG00000009446	SMG5	99	86.882	Vicugna_pacos
ENSPPAG00000011996	SMG5	100	94.193	ENSVVUG00000005887	SMG5	100	93.504	Vulpes_vulpes
ENSPPAG00000011996	SMG5	77	65.700	ENSXETG00000033791	SMG5	99	64.943	Xenopus_tropicalis
ENSPPAG00000011996	SMG5	76	75.113	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSPPAG00000011996	SMG5	93	74.887	ENSXMAG00000013499	smg5	99	65.865	Xiphophorus_maculatus