EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000019280 (Gene tree)
Gene ID: 100990282
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 17969 bases
Position: chr8:144148075-144166043
Accession: 100990282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000004732	CPSF_A	PF03178.15	1.1e-91	1	1
ENSPPAP00000004746	CPSF_A	PF03178.15	9.4e-86	1	1
ENSPPAP00000004743	CPSF_A	PF03178.15	3.3e-76	1	1
ENSPPAP00000004752	CPSF_A	PF03178.15	4.6e-64	1	2
ENSPPAP00000004752	CPSF_A	PF03178.15	4.6e-64	2	2
ENSPPAP00000004759	CPSF_A	PF03178.15	9.2e-34	1	1
ENSPPAP00000004757	CPSF_A	PF03178.15	1.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000021747	CPSF1-204	4182	-	ENSPPAP00000004752	1393 (aa)	-	A0A2R8ZIG4
ENSPPAT00000021725	CPSF1-202	4353	-	ENSPPAP00000004743	1450 (aa)	-	A0A2R8ZJ40
ENSPPAT00000021770	CPSF1-205	651	-	ENSPPAP00000004757	216 (aa)	-	A0A2R8ZIF7
ENSPPAT00000021775	CPSF1-206	615	-	ENSPPAP00000004759	204 (aa)	-	A0A2R8ZJ55
ENSPPAT00000021691	CPSF1-201	5608	XM_003819416	ENSPPAP00000004732	1442 (aa)	XP_003819464	A0A2R8ZIE5
ENSPPAT00000021738	CPSF1-203	4290	-	ENSPPAP00000004746	1429 (aa)	-	A0A2R8ZIE7
ENSPPAT00000021776	CPSF1-207	447	-	ENSPPAP00000004760	148 (aa)	-	A0A2R8ZLF7

Gene Model

Click here to download ENSPPAG00000019280's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000019280's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000019280	CPSF1	100	99.792	ENSG00000071894	CPSF1	100	99.792	Homo_sapiens
ENSPPAG00000019280	CPSF1	100	81.900	ENSAPOG00000019621	cpsf1	100	77.973	Acanthochromis_polyacanthus
ENSPPAG00000019280	CPSF1	97	95.068	ENSAMEG00000005557	CPSF1	100	95.068	Ailuropoda_melanoleuca
ENSPPAG00000019280	CPSF1	100	80.543	ENSACIG00000006112	cpsf1	100	77.993	Amphilophus_citrinellus
ENSPPAG00000019280	CPSF1	100	81.900	ENSAOCG00000007120	cpsf1	100	79.325	Amphiprion_ocellaris
ENSPPAG00000019280	CPSF1	100	81.900	ENSAPEG00000005755	cpsf1	100	79.600	Amphiprion_percula
ENSPPAG00000019280	CPSF1	100	81.448	ENSATEG00000011097	cpsf1	100	78.018	Anabas_testudineus
ENSPPAG00000019280	CPSF1	93	81.771	ENSACAG00000009655	CPSF1	100	81.771	Anolis_carolinensis
ENSPPAG00000019280	CPSF1	100	99.168	ENSANAG00000036514	CPSF1	100	99.168	Aotus_nancymaae
ENSPPAG00000019280	CPSF1	100	80.543	ENSACLG00000012231	cpsf1	99	78.677	Astatotilapia_calliptera
ENSPPAG00000019280	CPSF1	100	80.543	ENSAMXG00000008485	cpsf1	100	74.153	Astyanax_mexicanus
ENSPPAG00000019280	CPSF1	100	94.490	ENSBTAG00000008355	CPSF1	100	94.672	Bos_taurus
ENSPPAG00000019280	CPSF1	99	34.361	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSPPAG00000019280	CPSF1	100	98.960	ENSCJAG00000021421	CPSF1	100	98.960	Callithrix_jacchus
ENSPPAG00000019280	CPSF1	97	96.426	ENSCAFG00000001600	CPSF1	100	96.751	Canis_familiaris
ENSPPAG00000019280	CPSF1	100	96.678	ENSCAFG00020020821	CPSF1	100	96.678	Canis_lupus_dingo
ENSPPAG00000019280	CPSF1	100	90.834	ENSCHIG00000015833	CPSF1	100	90.834	Capra_hircus
ENSPPAG00000019280	CPSF1	100	97.989	ENSTSYG00000028560	CPSF1	99	99.123	Carlito_syrichta
ENSPPAG00000019280	CPSF1	97	95.269	ENSCAPG00000014921	CPSF1	99	95.269	Cavia_aperea
ENSPPAG00000019280	CPSF1	100	94.941	ENSCPOG00000011448	CPSF1	100	94.941	Cavia_porcellus
ENSPPAG00000019280	CPSF1	100	99.098	ENSCCAG00000037658	CPSF1	100	99.098	Cebus_capucinus
ENSPPAG00000019280	CPSF1	100	99.376	ENSCATG00000037234	CPSF1	100	99.376	Cercocebus_atys
ENSPPAG00000019280	CPSF1	100	96.602	ENSCLAG00000012166	CPSF1	100	96.602	Chinchilla_lanigera
ENSPPAG00000019280	CPSF1	100	99.307	ENSCSAG00000008502	CPSF1	100	99.307	Chlorocebus_sabaeus
ENSPPAG00000019280	CPSF1	99	87.614	ENSCPBG00000018910	CPSF1	96	87.614	Chrysemys_picta_bellii
ENSPPAG00000019280	CPSF1	96	48.494	ENSCING00000000514	-	100	48.422	Ciona_intestinalis
ENSPPAG00000019280	CPSF1	99	47.835	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSPPAG00000019280	CPSF1	100	98.529	ENSCANG00000032760	CPSF1	100	98.529	Colobus_angolensis_palliatus
ENSPPAG00000019280	CPSF1	100	96.463	ENSCGRG00001016344	Cpsf1	100	96.463	Cricetulus_griseus_chok1gshd
ENSPPAG00000019280	CPSF1	100	94.383	ENSCGRG00000003118	Cpsf1	100	94.383	Cricetulus_griseus_crigri
ENSPPAG00000019280	CPSF1	100	78.281	ENSCSEG00000013464	cpsf1	100	77.424	Cynoglossus_semilaevis
ENSPPAG00000019280	CPSF1	100	81.951	ENSCVAG00000014059	cpsf1	100	81.951	Cyprinodon_variegatus
ENSPPAG00000019280	CPSF1	100	80.090	ENSDARG00000034178	cpsf1	100	79.752	Danio_rerio
ENSPPAG00000019280	CPSF1	57	95.942	ENSDNOG00000043654	CPSF1	94	95.942	Dasypus_novemcinctus
ENSPPAG00000019280	CPSF1	97	96.057	ENSDORG00000006278	Cpsf1	99	96.057	Dipodomys_ordii
ENSPPAG00000019280	CPSF1	100	45.662	FBgn0024698	Cpsf160	100	45.559	Drosophila_melanogaster
ENSPPAG00000019280	CPSF1	83	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSPPAG00000019280	CPSF1	91	64.677	ENSEBUG00000006844	-	97	74.541	Eptatretus_burgeri
ENSPPAG00000019280	CPSF1	100	97.301	ENSEASG00005010774	CPSF1	100	97.301	Equus_asinus_asinus
ENSPPAG00000019280	CPSF1	100	97.301	ENSECAG00000022209	CPSF1	100	97.301	Equus_caballus
ENSPPAG00000019280	CPSF1	100	94.671	ENSEEUG00000000471	CPSF1	100	94.671	Erinaceus_europaeus
ENSPPAG00000019280	CPSF1	100	81.364	ENSELUG00000012271	cpsf1	100	78.767	Esox_lucius
ENSPPAG00000019280	CPSF1	100	96.671	ENSFDAG00000016060	CPSF1	100	96.671	Fukomys_damarensis
ENSPPAG00000019280	CPSF1	100	76.997	ENSFHEG00000016801	cpsf1	100	76.860	Fundulus_heteroclitus
ENSPPAG00000019280	CPSF1	100	80.093	ENSGMOG00000000796	cpsf1	100	78.069	Gadus_morhua
ENSPPAG00000019280	CPSF1	95	88.235	ENSGAFG00000018890	cpsf1	100	87.755	Gambusia_affinis
ENSPPAG00000019280	CPSF1	100	79.630	ENSGACG00000008703	cpsf1	100	78.680	Gasterosteus_aculeatus
ENSPPAG00000019280	CPSF1	100	83.748	ENSGAGG00000004276	CPSF1	98	87.500	Gopherus_agassizii
ENSPPAG00000019280	CPSF1	100	99.861	ENSGGOG00000016185	CPSF1	100	99.861	Gorilla_gorilla
ENSPPAG00000019280	CPSF1	100	64.352	ENSGGOG00000040487	-	100	70.833	Gorilla_gorilla
ENSPPAG00000019280	CPSF1	100	80.543	ENSHBUG00000018900	cpsf1	100	79.377	Haplochromis_burtoni
ENSPPAG00000019280	CPSF1	100	96.533	ENSHGLG00000016139	CPSF1	100	96.533	Heterocephalus_glaber_female
ENSPPAG00000019280	CPSF1	100	96.463	ENSHGLG00100009750	CPSF1	100	96.463	Heterocephalus_glaber_male
ENSPPAG00000019280	CPSF1	100	79.630	ENSHCOG00000018509	cpsf1	100	77.001	Hippocampus_comes
ENSPPAG00000019280	CPSF1	100	81.900	ENSIPUG00000011259	cpsf1	100	76.770	Ictalurus_punctatus
ENSPPAG00000019280	CPSF1	97	96.786	ENSSTOG00000009957	CPSF1	99	96.786	Ictidomys_tridecemlineatus
ENSPPAG00000019280	CPSF1	100	96.325	ENSJJAG00000023002	Cpsf1	100	96.325	Jaculus_jaculus
ENSPPAG00000019280	CPSF1	100	77.376	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSPPAG00000019280	CPSF1	100	80.090	ENSLBEG00000003601	cpsf1	100	77.686	Labrus_bergylta
ENSPPAG00000019280	CPSF1	100	82.805	ENSLACG00000000233	CPSF1	92	81.490	Latimeria_chalumnae
ENSPPAG00000019280	CPSF1	100	82.960	ENSLOCG00000008484	cpsf1	100	78.399	Lepisosteus_oculatus
ENSPPAG00000019280	CPSF1	97	95.708	ENSLAFG00000022601	CPSF1	100	95.708	Loxodonta_africana
ENSPPAG00000019280	CPSF1	100	99.376	ENSMFAG00000037013	CPSF1	100	99.376	Macaca_fascicularis
ENSPPAG00000019280	CPSF1	100	99.445	ENSMMUG00000007380	CPSF1	100	99.445	Macaca_mulatta
ENSPPAG00000019280	CPSF1	100	99.020	ENSMNEG00000043564	CPSF1	100	99.570	Macaca_nemestrina
ENSPPAG00000019280	CPSF1	100	99.376	ENSMLEG00000043010	CPSF1	100	99.376	Mandrillus_leucophaeus
ENSPPAG00000019280	CPSF1	100	81.448	ENSMAMG00000003803	cpsf1	100	78.176	Mastacembelus_armatus
ENSPPAG00000019280	CPSF1	100	80.543	ENSMZEG00005001168	cpsf1	100	77.232	Maylandia_zebra
ENSPPAG00000019280	CPSF1	100	96.255	ENSMAUG00000003601	Cpsf1	100	96.255	Mesocricetus_auratus
ENSPPAG00000019280	CPSF1	100	97.712	ENSMICG00000015767	CPSF1	100	97.712	Microcebus_murinus
ENSPPAG00000019280	CPSF1	100	96.463	ENSMOCG00000022758	Cpsf1	100	96.463	Microtus_ochrogaster
ENSPPAG00000019280	CPSF1	100	80.090	ENSMMOG00000021245	cpsf1	100	78.838	Mola_mola
ENSPPAG00000019280	CPSF1	100	93.034	ENSMODG00000010755	CPSF1	100	93.034	Monodelphis_domestica
ENSPPAG00000019280	CPSF1	100	80.995	ENSMALG00000020545	cpsf1	100	77.740	Monopterus_albus
ENSPPAG00000019280	CPSF1	100	96.671	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.671	Mus_caroli
ENSPPAG00000019280	CPSF1	100	96.602	ENSMUSG00000034022	Cpsf1	100	96.602	Mus_musculus
ENSPPAG00000019280	CPSF1	100	96.533	MGP_PahariEiJ_G0019946	Cpsf1	100	96.533	Mus_pahari
ENSPPAG00000019280	CPSF1	100	96.602	MGP_SPRETEiJ_G0020839	Cpsf1	100	96.602	Mus_spretus
ENSPPAG00000019280	CPSF1	94	95.926	ENSMPUG00000006419	CPSF1	93	95.926	Mustela_putorius_furo
ENSPPAG00000019280	CPSF1	78	97.484	ENSMLUG00000000667	-	100	96.667	Myotis_lucifugus
ENSPPAG00000019280	CPSF1	100	96.325	ENSNGAG00000022460	Cpsf1	100	96.325	Nannospalax_galili
ENSPPAG00000019280	CPSF1	100	81.019	ENSNBRG00000000813	cpsf1	100	75.035	Neolamprologus_brichardi
ENSPPAG00000019280	CPSF1	100	98.529	ENSNLEG00000010633	-	100	98.529	Nomascus_leucogenys
ENSPPAG00000019280	CPSF1	85	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSPPAG00000019280	CPSF1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSPPAG00000019280	CPSF1	100	96.741	ENSODEG00000013995	CPSF1	100	96.741	Octodon_degus
ENSPPAG00000019280	CPSF1	100	80.090	ENSONIG00000007676	cpsf1	100	79.654	Oreochromis_niloticus
ENSPPAG00000019280	CPSF1	59	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSPPAG00000019280	CPSF1	100	78.733	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSPPAG00000019280	CPSF1	100	78.733	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSPPAG00000019280	CPSF1	100	78.733	ENSORLG00015009979	cpsf1	100	77.430	Oryzias_latipes_hsok
ENSPPAG00000019280	CPSF1	100	79.186	ENSOMEG00000011849	cpsf1	100	77.536	Oryzias_melastigma
ENSPPAG00000019280	CPSF1	100	97.573	ENSOGAG00000000315	CPSF1	100	97.573	Otolemur_garnettii
ENSPPAG00000019280	CPSF1	100	100.000	ENSPTRG00000051253	-	100	100.000	Pan_troglodytes
ENSPPAG00000019280	CPSF1	100	100.000	ENSPTRG00000049288	-	100	100.000	Pan_troglodytes
ENSPPAG00000019280	CPSF1	100	62.963	ENSPTRG00000052516	-	100	69.444	Pan_troglodytes
ENSPPAG00000019280	CPSF1	100	98.529	ENSPANG00000015005	CPSF1	100	99.426	Papio_anubis
ENSPPAG00000019280	CPSF1	100	83.258	ENSPKIG00000002582	cpsf1	100	81.014	Paramormyrops_kingsleyae
ENSPPAG00000019280	CPSF1	100	77.376	ENSPMGG00000022177	-	100	84.259	Periophthalmus_magnuspinnatus
ENSPPAG00000019280	CPSF1	100	92.966	ENSPCIG00000009035	CPSF1	100	92.966	Phascolarctos_cinereus
ENSPPAG00000019280	CPSF1	100	77.828	ENSPFOG00000012870	cpsf1	100	76.387	Poecilia_formosa
ENSPPAG00000019280	CPSF1	100	77.376	ENSPREG00000016307	cpsf1	100	76.133	Poecilia_reticulata
ENSPPAG00000019280	CPSF1	100	91.401	ENSPPYG00000018973	CPSF1	100	91.401	Pongo_abelii
ENSPPAG00000019280	CPSF1	92	95.129	ENSPCAG00000011541	CPSF1	94	95.129	Procavia_capensis
ENSPPAG00000019280	CPSF1	100	94.608	ENSPCOG00000020001	CPSF1	100	94.608	Propithecus_coquereli
ENSPPAG00000019280	CPSF1	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSPPAG00000019280	CPSF1	100	80.543	ENSPNYG00000004906	cpsf1	100	78.347	Pundamilia_nyererei
ENSPPAG00000019280	CPSF1	100	75.483	ENSPNAG00000024395	cpsf1	100	75.483	Pygocentrus_nattereri
ENSPPAG00000019280	CPSF1	100	96.602	ENSRNOG00000030705	Cpsf1	100	96.602	Rattus_norvegicus
ENSPPAG00000019280	CPSF1	100	99.376	ENSRBIG00000044907	CPSF1	100	99.376	Rhinopithecus_bieti
ENSPPAG00000019280	CPSF1	100	99.307	ENSRROG00000044861	CPSF1	100	99.307	Rhinopithecus_roxellana
ENSPPAG00000019280	CPSF1	97	99.067	ENSSBOG00000027177	CPSF1	100	99.067	Saimiri_boliviensis_boliviensis
ENSPPAG00000019280	CPSF1	100	92.828	ENSSHAG00000006500	CPSF1	100	92.828	Sarcophilus_harrisii
ENSPPAG00000019280	CPSF1	100	83.710	ENSSFOG00015004606	cpsf1	100	81.164	Scleropages_formosus
ENSPPAG00000019280	CPSF1	100	81.900	ENSSMAG00000020547	cpsf1	100	78.011	Scophthalmus_maximus
ENSPPAG00000019280	CPSF1	100	81.448	ENSSDUG00000001100	cpsf1	100	79.198	Seriola_dumerili
ENSPPAG00000019280	CPSF1	100	81.448	ENSSLDG00000003619	cpsf1	100	79.253	Seriola_lalandi_dorsalis
ENSPPAG00000019280	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSPPAG00000019280	CPSF1	100	89.216	ENSSPUG00000014396	CPSF1	100	89.216	Sphenodon_punctatus
ENSPPAG00000019280	CPSF1	100	81.448	ENSSPAG00000005349	cpsf1	100	78.161	Stegastes_partitus
ENSPPAG00000019280	CPSF1	100	96.125	ENSSSCG00000005906	CPSF1	100	96.125	Sus_scrofa
ENSPPAG00000019280	CPSF1	100	78.281	ENSTRUG00000013134	cpsf1	99	77.832	Takifugu_rubripes
ENSPPAG00000019280	CPSF1	100	78.832	ENSTNIG00000014027	cpsf1	100	78.488	Tetraodon_nigroviridis
ENSPPAG00000019280	CPSF1	77	89.310	ENSTBEG00000001756	CPSF1	91	89.310	Tupaia_belangeri
ENSPPAG00000019280	CPSF1	100	89.593	ENSTTRG00000001937	CPSF1	90	96.718	Tursiops_truncatus
ENSPPAG00000019280	CPSF1	97	96.783	ENSUAMG00000006476	CPSF1	98	96.783	Ursus_americanus
ENSPPAG00000019280	CPSF1	69	57.516	ENSVPAG00000000157	-	50	94.949	Vicugna_pacos
ENSPPAG00000019280	CPSF1	100	94.118	ENSVVUG00000005940	-	100	94.118	Vulpes_vulpes
ENSPPAG00000019280	CPSF1	100	77.593	ENSXCOG00000003608	cpsf1	100	77.455	Xiphophorus_couchianus
ENSPPAG00000019280	CPSF1	100	77.828	ENSXMAG00000005798	cpsf1	100	77.072	Xiphophorus_maculatus