EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000023754 (Gene tree)
Gene ID: 100995759
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 66967 bases
Position: chr2B:155985960-156052926
Accession: 100995759
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000005879	Rif1_N	PF12231.8	2.8e-77	1	1
ENSPPAP00000005876	Rif1_N	PF12231.8	2.8e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000026208	RIF1-201	9850	XM_003818309	ENSPPAP00000005876	2473 (aa)	XP_003818357	A0A2R8ZPE7
ENSPPAT00000026215	RIF1-202	9772	XM_003818311	ENSPPAP00000005879	2447 (aa)	XP_003818359	A0A2R8ZLP8

Gene Model

Click here to download ENSPPAG00000023754's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000023754's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000023754	RIF1	100	99.030	ENSG00000080345	RIF1	100	99.030	Homo_sapiens
ENSPPAG00000023754	RIF1	99	80.097	ENSAMEG00000008461	RIF1	100	80.056	Ailuropoda_melanoleuca
ENSPPAG00000023754	RIF1	64	49.922	ENSACIG00000017765	rif1	69	50.000	Amphilophus_citrinellus
ENSPPAG00000023754	RIF1	53	48.522	ENSAOCG00000017231	rif1	68	47.536	Amphiprion_ocellaris
ENSPPAG00000023754	RIF1	70	54.634	ENSAPEG00000013228	rif1	67	56.082	Amphiprion_percula
ENSPPAG00000023754	RIF1	65	48.273	ENSATEG00000022887	rif1	68	48.273	Anabas_testudineus
ENSPPAG00000023754	RIF1	84	65.015	ENSAPLG00000007092	RIF1	92	64.723	Anas_platyrhynchos
ENSPPAG00000023754	RIF1	84	57.227	ENSACAG00000003714	RIF1	90	57.227	Anolis_carolinensis
ENSPPAG00000023754	RIF1	100	90.663	ENSANAG00000024840	RIF1	100	90.663	Aotus_nancymaae
ENSPPAG00000023754	RIF1	63	45.707	ENSAMXG00000010910	rif1	52	50.973	Astyanax_mexicanus
ENSPPAG00000023754	RIF1	94	78.866	ENSBTAG00000021020	RIF1	99	78.866	Bos_taurus
ENSPPAG00000023754	RIF1	100	89.859	ENSCJAG00000003138	RIF1	100	89.859	Callithrix_jacchus
ENSPPAG00000023754	RIF1	100	78.278	ENSCAFG00000005670	RIF1	97	78.238	Canis_familiaris
ENSPPAG00000023754	RIF1	100	77.558	ENSCAFG00020016401	RIF1	100	77.518	Canis_lupus_dingo
ENSPPAG00000023754	RIF1	100	79.089	ENSCHIG00000020327	RIF1	100	79.089	Capra_hircus
ENSPPAG00000023754	RIF1	99	80.073	ENSTSYG00000008861	RIF1	100	80.073	Carlito_syrichta
ENSPPAG00000023754	RIF1	79	83.721	ENSCAPG00000008957	RIF1	96	83.721	Cavia_aperea
ENSPPAG00000023754	RIF1	99	71.291	ENSCPOG00000037898	RIF1	99	71.371	Cavia_porcellus
ENSPPAG00000023754	RIF1	100	89.369	ENSCCAG00000024760	RIF1	100	89.369	Cebus_capucinus
ENSPPAG00000023754	RIF1	100	95.107	ENSCATG00000033353	RIF1	100	95.107	Cercocebus_atys
ENSPPAG00000023754	RIF1	96	74.561	ENSCLAG00000001517	RIF1	99	74.341	Chinchilla_lanigera
ENSPPAG00000023754	RIF1	100	94.905	ENSCSAG00000016089	RIF1	100	94.905	Chlorocebus_sabaeus
ENSPPAG00000023754	RIF1	97	77.391	ENSCHOG00000007187	RIF1	97	77.391	Choloepus_hoffmanni
ENSPPAG00000023754	RIF1	90	71.598	ENSCPBG00000025885	RIF1	96	72.781	Chrysemys_picta_bellii
ENSPPAG00000023754	RIF1	100	93.533	ENSCANG00000028962	RIF1	100	94.675	Colobus_angolensis_palliatus
ENSPPAG00000023754	RIF1	99	70.333	ENSCGRG00001024589	Rif1	100	70.333	Cricetulus_griseus_chok1gshd
ENSPPAG00000023754	RIF1	99	71.405	ENSCGRG00000010713	Rif1	100	71.405	Cricetulus_griseus_crigri
ENSPPAG00000023754	RIF1	64	48.790	ENSCVAG00000022479	rif1	68	48.754	Cyprinodon_variegatus
ENSPPAG00000023754	RIF1	99	77.054	ENSDNOG00000011194	RIF1	97	77.054	Dasypus_novemcinctus
ENSPPAG00000023754	RIF1	92	72.294	ENSETEG00000012421	RIF1	92	71.970	Echinops_telfairi
ENSPPAG00000023754	RIF1	96	87.646	ENSEASG00005023434	RIF1	98	91.089	Equus_asinus_asinus
ENSPPAG00000023754	RIF1	97	90.332	ENSECAG00000012679	RIF1	100	90.332	Equus_caballus
ENSPPAG00000023754	RIF1	62	50.874	ENSELUG00000006826	rif1	56	50.710	Esox_lucius
ENSPPAG00000023754	RIF1	100	79.155	ENSFCAG00000029742	RIF1	100	79.405	Felis_catus
ENSPPAG00000023754	RIF1	78	63.110	ENSFALG00000013874	RIF1	91	63.720	Ficedula_albicollis
ENSPPAG00000023754	RIF1	99	75.726	ENSFDAG00000006538	RIF1	99	75.685	Fukomys_damarensis
ENSPPAG00000023754	RIF1	62	50.000	ENSFHEG00000013721	rif1	65	49.881	Fundulus_heteroclitus
ENSPPAG00000023754	RIF1	53	52.747	ENSGMOG00000003517	rif1	80	52.747	Gadus_morhua
ENSPPAG00000023754	RIF1	79	63.824	ENSGALG00000012484	RIF1	91	63.824	Gallus_gallus
ENSPPAG00000023754	RIF1	59	53.994	ENSGAFG00000017196	rif1	65	53.707	Gambusia_affinis
ENSPPAG00000023754	RIF1	59	55.285	ENSGACG00000008579	rif1	66	54.800	Gasterosteus_aculeatus
ENSPPAG00000023754	RIF1	88	71.257	ENSGAGG00000012595	RIF1	97	72.372	Gopherus_agassizii
ENSPPAG00000023754	RIF1	90	99.714	ENSGGOG00000040178	RIF1	96	99.714	Gorilla_gorilla
ENSPPAG00000023754	RIF1	62	56.846	ENSHBUG00000007125	rif1	65	57.261	Haplochromis_burtoni
ENSPPAG00000023754	RIF1	95	75.649	ENSHGLG00100009807	RIF1	99	75.564	Heterocephalus_glaber_male
ENSPPAG00000023754	RIF1	63	48.177	ENSHCOG00000015943	rif1	60	48.177	Hippocampus_comes
ENSPPAG00000023754	RIF1	50	52.546	ENSIPUG00000021703	rif1	50	52.369	Ictalurus_punctatus
ENSPPAG00000023754	RIF1	100	77.885	ENSSTOG00000020712	RIF1	100	77.885	Ictidomys_tridecemlineatus
ENSPPAG00000023754	RIF1	99	69.352	ENSJJAG00000023000	Rif1	100	69.392	Jaculus_jaculus
ENSPPAG00000023754	RIF1	64	49.134	ENSKMAG00000002852	rif1	67	49.134	Kryptolebias_marmoratus
ENSPPAG00000023754	RIF1	60	56.790	ENSLBEG00000023196	rif1	57	56.790	Labrus_bergylta
ENSPPAG00000023754	RIF1	85	62.388	ENSLACG00000005425	RIF1	89	62.388	Latimeria_chalumnae
ENSPPAG00000023754	RIF1	62	53.785	ENSLOCG00000002657	rif1	82	51.290	Lepisosteus_oculatus
ENSPPAG00000023754	RIF1	99	78.091	ENSLAFG00000009796	RIF1	100	78.091	Loxodonta_africana
ENSPPAG00000023754	RIF1	100	95.107	ENSMFAG00000032233	RIF1	100	95.107	Macaca_fascicularis
ENSPPAG00000023754	RIF1	100	95.067	ENSMMUG00000008611	RIF1	100	95.067	Macaca_mulatta
ENSPPAG00000023754	RIF1	100	94.986	ENSMNEG00000031616	RIF1	100	94.986	Macaca_nemestrina
ENSPPAG00000023754	RIF1	100	95.148	ENSMLEG00000042945	RIF1	100	95.148	Mandrillus_leucophaeus
ENSPPAG00000023754	RIF1	74	49.007	ENSMAMG00000001745	rif1	76	48.931	Mastacembelus_armatus
ENSPPAG00000023754	RIF1	66	49.509	ENSMZEG00005020920	rif1	72	49.509	Maylandia_zebra
ENSPPAG00000023754	RIF1	84	59.780	ENSMGAG00000012732	RIF1	92	59.780	Meleagris_gallopavo
ENSPPAG00000023754	RIF1	95	89.694	ENSMAUG00000013158	Rif1	99	89.694	Mesocricetus_auratus
ENSPPAG00000023754	RIF1	100	84.442	ENSMICG00000046127	RIF1	100	84.442	Microcebus_murinus
ENSPPAG00000023754	RIF1	99	69.891	ENSMOCG00000009381	Rif1	100	69.891	Microtus_ochrogaster
ENSPPAG00000023754	RIF1	50	49.401	ENSMMOG00000006519	rif1	51	49.244	Mola_mola
ENSPPAG00000023754	RIF1	100	59.728	ENSMODG00000003703	RIF1	100	59.481	Monodelphis_domestica
ENSPPAG00000023754	RIF1	63	49.278	ENSMALG00000016759	rif1	71	49.194	Monopterus_albus
ENSPPAG00000023754	RIF1	99	69.125	MGP_CAROLIEiJ_G0023555	Rif1	100	69.206	Mus_caroli
ENSPPAG00000023754	RIF1	99	69.892	ENSMUSG00000036202	Rif1	100	69.972	Mus_musculus
ENSPPAG00000023754	RIF1	99	68.024	MGP_PahariEiJ_G0025006	Rif1	100	67.984	Mus_pahari
ENSPPAG00000023754	RIF1	99	69.634	MGP_SPRETEiJ_G0024476	Rif1	100	69.593	Mus_spretus
ENSPPAG00000023754	RIF1	100	79.219	ENSMPUG00000000371	RIF1	100	79.219	Mustela_putorius_furo
ENSPPAG00000023754	RIF1	90	76.782	ENSMLUG00000003376	RIF1	100	76.782	Myotis_lucifugus
ENSPPAG00000023754	RIF1	100	73.097	ENSNGAG00000009268	Rif1	100	73.097	Nannospalax_galili
ENSPPAG00000023754	RIF1	62	50.526	ENSNBRG00000014257	rif1	71	48.571	Neolamprologus_brichardi
ENSPPAG00000023754	RIF1	100	95.525	ENSNLEG00000010955	RIF1	100	95.525	Nomascus_leucogenys
ENSPPAG00000023754	RIF1	83	78.222	ENSMEUG00000007601	-	88	78.222	Notamacropus_eugenii
ENSPPAG00000023754	RIF1	99	72.101	ENSODEG00000003950	RIF1	99	72.424	Octodon_degus
ENSPPAG00000023754	RIF1	75	48.788	ENSONIG00000013657	rif1	54	50.346	Oreochromis_niloticus
ENSPPAG00000023754	RIF1	84	64.964	ENSOANG00000006078	-	86	64.964	Ornithorhynchus_anatinus
ENSPPAG00000023754	RIF1	100	76.833	ENSOCUG00000017435	RIF1	100	76.833	Oryctolagus_cuniculus
ENSPPAG00000023754	RIF1	64	47.937	ENSORLG00020001302	rif1	69	48.524	Oryzias_latipes_hni
ENSPPAG00000023754	RIF1	62	48.254	ENSORLG00015000009	rif1	66	48.254	Oryzias_latipes_hsok
ENSPPAG00000023754	RIF1	68	48.765	ENSOMEG00000021513	rif1	74	47.788	Oryzias_melastigma
ENSPPAG00000023754	RIF1	99	81.210	ENSOGAG00000006141	RIF1	99	81.089	Otolemur_garnettii
ENSPPAG00000023754	RIF1	100	79.089	ENSOARG00000008930	RIF1	100	79.089	Ovis_aries
ENSPPAG00000023754	RIF1	100	79.324	ENSPPRG00000003618	RIF1	100	79.445	Panthera_pardus
ENSPPAG00000023754	RIF1	100	79.364	ENSPTIG00000020652	RIF1	100	79.485	Panthera_tigris_altaica
ENSPPAG00000023754	RIF1	100	99.677	ENSPTRG00000012534	RIF1	100	99.677	Pan_troglodytes
ENSPPAG00000023754	RIF1	100	94.824	ENSPANG00000008525	RIF1	100	94.824	Papio_anubis
ENSPPAG00000023754	RIF1	63	52.135	ENSPKIG00000004267	rif1	68	52.077	Paramormyrops_kingsleyae
ENSPPAG00000023754	RIF1	65	46.307	ENSPMGG00000016141	rif1	79	44.980	Periophthalmus_magnuspinnatus
ENSPPAG00000023754	RIF1	99	71.802	ENSPEMG00000000446	Rif1	99	71.802	Peromyscus_maniculatus_bairdii
ENSPPAG00000023754	RIF1	99	59.166	ENSPCIG00000009185	RIF1	99	59.085	Phascolarctos_cinereus
ENSPPAG00000023754	RIF1	56	51.657	ENSPFOG00000000554	-	63	51.381	Poecilia_formosa
ENSPPAG00000023754	RIF1	62	51.435	ENSPFOG00000017804	rif1	66	51.241	Poecilia_formosa
ENSPPAG00000023754	RIF1	62	51.168	ENSPLAG00000017945	rif1	68	51.170	Poecilia_latipinna
ENSPPAG00000023754	RIF1	53	50.049	ENSPMEG00000006897	-	62	49.755	Poecilia_mexicana
ENSPPAG00000023754	RIF1	55	64.894	ENSPREG00000018052	rif1	65	54.027	Poecilia_reticulata
ENSPPAG00000023754	RIF1	100	97.291	ENSPPYG00000012846	RIF1	100	97.291	Pongo_abelii
ENSPPAG00000023754	RIF1	83	88.119	ENSPCAG00000009032	RIF1	83	88.119	Procavia_capensis
ENSPPAG00000023754	RIF1	100	84.556	ENSPCOG00000027888	RIF1	100	84.556	Propithecus_coquereli
ENSPPAG00000023754	RIF1	93	88.821	ENSPVAG00000014276	RIF1	95	88.821	Pteropus_vampyrus
ENSPPAG00000023754	RIF1	63	49.006	ENSPNYG00000012940	rif1	68	48.928	Pundamilia_nyererei
ENSPPAG00000023754	RIF1	65	51.697	ENSPNAG00000016685	rif1	67	52.034	Pygocentrus_nattereri
ENSPPAG00000023754	RIF1	99	68.394	ENSRNOG00000054901	Rif1	100	68.394	Rattus_norvegicus
ENSPPAG00000023754	RIF1	100	94.258	ENSRBIG00000003704	RIF1	100	94.258	Rhinopithecus_bieti
ENSPPAG00000023754	RIF1	100	95.350	ENSRROG00000028206	RIF1	100	95.350	Rhinopithecus_roxellana
ENSPPAG00000023754	RIF1	97	96.774	ENSSBOG00000029530	RIF1	100	96.774	Saimiri_boliviensis_boliviensis
ENSPPAG00000023754	RIF1	99	59.216	ENSSHAG00000018552	RIF1	100	58.237	Sarcophilus_harrisii
ENSPPAG00000023754	RIF1	63	53.306	ENSSFOG00015021539	rif1	75	53.193	Scleropages_formosus
ENSPPAG00000023754	RIF1	62	50.603	ENSSDUG00000015632	rif1	72	48.788	Seriola_dumerili
ENSPPAG00000023754	RIF1	50	50.040	ENSSLDG00000019531	rif1	53	48.124	Seriola_lalandi_dorsalis
ENSPPAG00000023754	RIF1	63	82.712	ENSSARG00000007161	-	64	82.712	Sorex_araneus
ENSPPAG00000023754	RIF1	83	71.257	ENSSPUG00000003062	RIF1	90	71.257	Sphenodon_punctatus
ENSPPAG00000023754	RIF1	50	57.172	ENSSPAG00000018359	rif1	76	57.172	Stegastes_partitus
ENSPPAG00000023754	RIF1	100	79.541	ENSSSCG00000016395	RIF1	100	79.541	Sus_scrofa
ENSPPAG00000023754	RIF1	64	49.562	ENSTRUG00000015808	rif1	70	49.483	Takifugu_rubripes
ENSPPAG00000023754	RIF1	67	48.760	ENSTNIG00000011538	rif1	78	47.907	Tetraodon_nigroviridis
ENSPPAG00000023754	RIF1	83	87.975	ENSTBEG00000016082	RIF1	82	87.975	Tupaia_belangeri
ENSPPAG00000023754	RIF1	100	80.233	ENSTTRG00000011190	RIF1	100	80.233	Tursiops_truncatus
ENSPPAG00000023754	RIF1	90	79.412	ENSUAMG00000026385	RIF1	97	89.258	Ursus_americanus
ENSPPAG00000023754	RIF1	100	80.193	ENSUMAG00000000337	RIF1	100	80.153	Ursus_maritimus
ENSPPAG00000023754	RIF1	100	78.051	ENSVPAG00000002162	RIF1	100	78.051	Vicugna_pacos
ENSPPAG00000023754	RIF1	100	77.832	ENSVVUG00000011293	RIF1	100	77.630	Vulpes_vulpes
ENSPPAG00000023754	RIF1	99	43.659	ENSXETG00000004530	rif1	99	43.256	Xenopus_tropicalis
ENSPPAG00000023754	RIF1	63	48.327	ENSXMAG00000000506	rif1	64	48.638	Xiphophorus_maculatus