EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000027858 (Gene tree)
Gene ID: 100994310
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 139643 bases
Position: chr2B:139654036-139793678
Accession: 100994310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000009385	R3H	PF01424.22	2.5e-11	1	1
ENSPPAP00000009384	R3H	PF01424.22	2.9e-11	1	1
ENSPPAP00000009368	R3H	PF01424.22	3e-11	1	1
ENSPPAP00000009387	R3H	PF01424.22	3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000032033	R3HDM1-205	1281	-	ENSPPAP00000009392	426 (aa)	-	A0A2R8ZXU0
ENSPPAT00000032040	R3HDM1-206	1368	-	ENSPPAP00000009399	455 (aa)	-	A0A2R9A2A4
ENSPPAT00000032009	R3HDM1-201	4721	XM_003822812	ENSPPAP00000009368	1102 (aa)	XP_003822860	A0A2R9A0B4
ENSPPAT00000032028	R3HDM1-204	3309	XM_008976396	ENSPPAP00000009387	1102 (aa)	XP_008974644	A0A2R8ZXT3
ENSPPAT00000032025	R3HDM1-202	3141	-	ENSPPAP00000009384	1046 (aa)	-	A0A2R9A290
ENSPPAT00000032026	R3HDM1-203	3901	XM_003822811	ENSPPAP00000009385	973 (aa)	XP_003822859	A0A2R8ZWN0

Gene Model

Click here to download ENSPPAG00000027858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000027858's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000027858	R3HDM1	99	49.852	ENSPPAG00000034395	R3HDM2	95	57.664
ENSPPAG00000027858	R3HDM1	67	51.799	ENSPPAG00000032910	ARPP21	91	51.414

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000027858	R3HDM1	100	99.819	ENSG00000048991	R3HDM1	100	99.819	Homo_sapiens
ENSPPAG00000027858	R3HDM1	88	63.467	ENSAPOG00000020850	r3hdm1	92	63.467	Acanthochromis_polyacanthus
ENSPPAG00000027858	R3HDM1	100	94.842	ENSAMEG00000014886	R3HDM1	100	95.023	Ailuropoda_melanoleuca
ENSPPAG00000027858	R3HDM1	87	58.088	ENSAOCG00000005192	r3hdm1	95	58.088	Amphiprion_ocellaris
ENSPPAG00000027858	R3HDM1	87	63.200	ENSAPEG00000016108	r3hdm1	95	63.200	Amphiprion_percula
ENSPPAG00000027858	R3HDM1	87	63.441	ENSATEG00000000232	r3hdm1	82	63.441	Anabas_testudineus
ENSPPAG00000027858	R3HDM1	100	78.539	ENSAPLG00000015231	R3HDM1	100	78.810	Anas_platyrhynchos
ENSPPAG00000027858	R3HDM1	100	76.681	ENSACAG00000001676	R3HDM1	100	76.507	Anolis_carolinensis
ENSPPAG00000027858	R3HDM1	100	98.367	ENSANAG00000035334	R3HDM1	100	98.367	Aotus_nancymaae
ENSPPAG00000027858	R3HDM1	87	62.133	ENSACLG00000027282	r3hdm1	94	62.133	Astatotilapia_calliptera
ENSPPAG00000027858	R3HDM1	88	74.684	ENSAMXG00000003536	r3hdm1	89	74.603	Astyanax_mexicanus
ENSPPAG00000027858	R3HDM1	89	78.571	ENSAMXG00000012861	R3HDM1	100	60.896	Astyanax_mexicanus
ENSPPAG00000027858	R3HDM1	60	40.374	ENSAMXG00000020587	arpp21	63	47.500	Astyanax_mexicanus
ENSPPAG00000027858	R3HDM1	100	91.045	ENSBTAG00000013302	R3HDM1	100	91.308	Bos_taurus
ENSPPAG00000027858	R3HDM1	100	97.731	ENSCJAG00000011718	R3HDM1	100	97.731	Callithrix_jacchus
ENSPPAG00000027858	R3HDM1	100	95.023	ENSCAFG00000005075	R3HDM1	100	95.204	Canis_familiaris
ENSPPAG00000027858	R3HDM1	100	95.566	ENSCAFG00020016119	R3HDM1	100	95.656	Canis_lupus_dingo
ENSPPAG00000027858	R3HDM1	100	93.665	ENSCHIG00000020851	R3HDM1	100	93.937	Capra_hircus
ENSPPAG00000027858	R3HDM1	100	89.543	ENSCPOG00000012784	R3HDM1	100	94.304	Cavia_porcellus
ENSPPAG00000027858	R3HDM1	100	97.992	ENSCCAG00000027199	R3HDM1	100	97.992	Cebus_capucinus
ENSPPAG00000027858	R3HDM1	100	99.262	ENSCATG00000023642	R3HDM1	100	98.730	Cercocebus_atys
ENSPPAG00000027858	R3HDM1	100	89.446	ENSCLAG00000007962	R3HDM1	95	95.887	Chinchilla_lanigera
ENSPPAG00000027858	R3HDM1	100	95.599	ENSCSAG00000016356	R3HDM1	100	95.599	Chlorocebus_sabaeus
ENSPPAG00000027858	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSPPAG00000027858	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSPPAG00000027858	R3HDM1	100	98.730	ENSCANG00000034748	R3HDM1	100	98.730	Colobus_angolensis_palliatus
ENSPPAG00000027858	R3HDM1	99	88.801	ENSCGRG00001012357	R3hdm1	97	88.801	Cricetulus_griseus_chok1gshd
ENSPPAG00000027858	R3HDM1	99	91.371	ENSCGRG00000012080	R3hdm1	100	91.030	Cricetulus_griseus_crigri
ENSPPAG00000027858	R3HDM1	81	65.246	ENSCSEG00000008944	r3hdm1	82	65.246	Cynoglossus_semilaevis
ENSPPAG00000027858	R3HDM1	87	61.067	ENSCVAG00000007582	r3hdm1	91	61.067	Cyprinodon_variegatus
ENSPPAG00000027858	R3HDM1	64	36.170	ENSDARG00000061081	arpp21	89	35.830	Danio_rerio
ENSPPAG00000027858	R3HDM1	100	91.234	ENSDNOG00000000771	R3HDM1	100	90.737	Dasypus_novemcinctus
ENSPPAG00000027858	R3HDM1	100	82.986	ENSETEG00000013606	R3HDM1	100	83.620	Echinops_telfairi
ENSPPAG00000027858	R3HDM1	66	41.138	ENSEBUG00000014746	arpp21	97	42.511	Eptatretus_burgeri
ENSPPAG00000027858	R3HDM1	100	98.066	ENSEASG00005007392	R3HDM1	100	95.113	Equus_asinus_asinus
ENSPPAG00000027858	R3HDM1	99	98.066	ENSECAG00000019114	R3HDM1	100	95.385	Equus_caballus
ENSPPAG00000027858	R3HDM1	91	87.061	ENSEEUG00000012589	R3HDM1	91	87.061	Erinaceus_europaeus
ENSPPAG00000027858	R3HDM1	92	51.936	ENSELUG00000014413	r3hdm1	96	53.208	Esox_lucius
ENSPPAG00000027858	R3HDM1	92	75.610	ENSELUG00000004909	R3HDM1	99	56.244	Esox_lucius
ENSPPAG00000027858	R3HDM1	100	97.790	ENSFCAG00000027113	R3HDM1	100	94.751	Felis_catus
ENSPPAG00000027858	R3HDM1	75	72.822	ENSFALG00000013731	R3HDM1	93	66.935	Ficedula_albicollis
ENSPPAG00000027858	R3HDM1	100	89.279	ENSFDAG00000016478	R3HDM1	95	95.671	Fukomys_damarensis
ENSPPAG00000027858	R3HDM1	87	57.108	ENSFHEG00000018713	r3hdm1	91	61.867	Fundulus_heteroclitus
ENSPPAG00000027858	R3HDM1	60	64.783	ENSGMOG00000006042	-	74	65.217	Gadus_morhua
ENSPPAG00000027858	R3HDM1	94	77.297	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSPPAG00000027858	R3HDM1	87	61.333	ENSGAFG00000006203	r3hdm1	95	61.333	Gambusia_affinis
ENSPPAG00000027858	R3HDM1	86	68.269	ENSGACG00000014925	r3hdm1	92	68.269	Gasterosteus_aculeatus
ENSPPAG00000027858	R3HDM1	99	83.662	ENSGAGG00000007840	R3HDM1	100	78.410	Gopherus_agassizii
ENSPPAG00000027858	R3HDM1	100	99.274	ENSGGOG00000008156	R3HDM1	100	99.274	Gorilla_gorilla
ENSPPAG00000027858	R3HDM1	100	89.543	ENSHGLG00000015718	R3HDM1	95	95.887	Heterocephalus_glaber_female
ENSPPAG00000027858	R3HDM1	100	89.279	ENSHGLG00100003184	-	95	95.887	Heterocephalus_glaber_male
ENSPPAG00000027858	R3HDM1	100	69.050	ENSHGLG00100015374	-	100	73.503	Heterocephalus_glaber_male
ENSPPAG00000027858	R3HDM1	87	59.517	ENSHCOG00000013366	r3hdm1	91	60.322	Hippocampus_comes
ENSPPAG00000027858	R3HDM1	85	67.674	ENSIPUG00000013629	r3hdm1	94	70.288	Ictalurus_punctatus
ENSPPAG00000027858	R3HDM1	53	37.699	ENSIPUG00000020552	arpp21	74	38.053	Ictalurus_punctatus
ENSPPAG00000027858	R3HDM1	82	73.668	ENSIPUG00000001676	R3HDM1	98	58.613	Ictalurus_punctatus
ENSPPAG00000027858	R3HDM1	100	94.742	ENSSTOG00000007572	R3HDM1	100	96.502	Ictidomys_tridecemlineatus
ENSPPAG00000027858	R3HDM1	96	70.688	ENSLACG00000005334	R3HDM1	100	71.079	Latimeria_chalumnae
ENSPPAG00000027858	R3HDM1	100	66.992	ENSLOCG00000001641	r3hdm1	100	66.696	Lepisosteus_oculatus
ENSPPAG00000027858	R3HDM1	100	90.773	ENSLAFG00000009065	R3HDM1	100	90.949	Loxodonta_africana
ENSPPAG00000027858	R3HDM1	100	98.911	ENSMFAG00000030331	R3HDM1	100	100.000	Macaca_fascicularis
ENSPPAG00000027858	R3HDM1	100	98.730	ENSMMUG00000009844	R3HDM1	100	98.730	Macaca_mulatta
ENSPPAG00000027858	R3HDM1	100	98.730	ENSMNEG00000027793	R3HDM1	100	100.000	Macaca_nemestrina
ENSPPAG00000027858	R3HDM1	100	99.002	ENSMLEG00000043189	R3HDM1	100	99.002	Mandrillus_leucophaeus
ENSPPAG00000027858	R3HDM1	87	62.466	ENSMAMG00000004532	r3hdm1	91	57.635	Mastacembelus_armatus
ENSPPAG00000027858	R3HDM1	87	62.133	ENSMZEG00005003157	r3hdm1	95	57.108	Maylandia_zebra
ENSPPAG00000027858	R3HDM1	100	78.088	ENSMGAG00000012461	R3HDM1	100	78.269	Meleagris_gallopavo
ENSPPAG00000027858	R3HDM1	100	88.509	ENSMAUG00000010315	R3hdm1	100	91.362	Mesocricetus_auratus
ENSPPAG00000027858	R3HDM1	95	91.901	ENSMICG00000042655	-	94	98.366	Microcebus_murinus
ENSPPAG00000027858	R3HDM1	100	94.101	ENSMICG00000005900	-	100	94.101	Microcebus_murinus
ENSPPAG00000027858	R3HDM1	90	77.514	ENSMODG00000000923	R3HDM1	97	77.704	Monodelphis_domestica
ENSPPAG00000027858	R3HDM1	99	58.065	ENSMALG00000009000	r3hdm1	91	58.065	Monopterus_albus
ENSPPAG00000027858	R3HDM1	100	87.610	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.561	Mus_caroli
ENSPPAG00000027858	R3HDM1	100	87.610	ENSMUSG00000056211	R3hdm1	100	94.561	Mus_musculus
ENSPPAG00000027858	R3HDM1	100	87.522	MGP_PahariEiJ_G0027779	R3hdm1	100	94.561	Mus_pahari
ENSPPAG00000027858	R3HDM1	100	87.786	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.561	Mus_spretus
ENSPPAG00000027858	R3HDM1	100	94.480	ENSMPUG00000002412	R3HDM1	100	94.751	Mustela_putorius_furo
ENSPPAG00000027858	R3HDM1	100	93.309	ENSMLUG00000013824	R3HDM1	100	93.309	Myotis_lucifugus
ENSPPAG00000027858	R3HDM1	100	99.235	ENSNLEG00000008622	R3HDM1	100	99.235	Nomascus_leucogenys
ENSPPAG00000027858	R3HDM1	89	72.663	ENSMEUG00000011784	R3HDM1	100	72.792	Notamacropus_eugenii
ENSPPAG00000027858	R3HDM1	100	88.401	ENSODEG00000008607	R3HDM1	95	96.320	Octodon_degus
ENSPPAG00000027858	R3HDM1	94	66.873	ENSONIG00000012017	r3hdm1	91	66.873	Oreochromis_niloticus
ENSPPAG00000027858	R3HDM1	100	81.368	ENSOANG00000007987	R3HDM1	100	81.638	Ornithorhynchus_anatinus
ENSPPAG00000027858	R3HDM1	89	93.813	ENSOCUG00000017366	R3HDM1	98	93.813	Oryctolagus_cuniculus
ENSPPAG00000027858	R3HDM1	87	60.638	ENSORLG00000004297	r3hdm1	90	60.638	Oryzias_latipes
ENSPPAG00000027858	R3HDM1	89	61.067	ENSORLG00015017355	r3hdm1	91	61.067	Oryzias_latipes_hsok
ENSPPAG00000027858	R3HDM1	100	93.032	ENSOGAG00000003136	R3HDM1	100	93.122	Otolemur_garnettii
ENSPPAG00000027858	R3HDM1	100	93.484	ENSOARG00000010788	R3HDM1	100	93.756	Ovis_aries
ENSPPAG00000027858	R3HDM1	100	94.365	ENSPPRG00000002626	R3HDM1	100	94.480	Panthera_pardus
ENSPPAG00000027858	R3HDM1	100	94.365	ENSPTIG00000016581	R3HDM1	100	94.480	Panthera_tigris_altaica
ENSPPAG00000027858	R3HDM1	100	100.000	ENSPTRG00000012494	R3HDM1	100	100.000	Pan_troglodytes
ENSPPAG00000027858	R3HDM1	100	98.911	ENSPANG00000026448	R3HDM1	100	98.911	Papio_anubis
ENSPPAG00000027858	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.677	Paramormyrops_kingsleyae
ENSPPAG00000027858	R3HDM1	100	78.520	ENSPSIG00000012915	R3HDM1	100	78.881	Pelodiscus_sinensis
ENSPPAG00000027858	R3HDM1	100	88.840	ENSPEMG00000015187	R3hdm1	100	91.030	Peromyscus_maniculatus_bairdii
ENSPPAG00000027858	R3HDM1	91	55.053	ENSPMAG00000003369	-	99	43.009	Petromyzon_marinus
ENSPPAG00000027858	R3HDM1	100	90.659	ENSPCIG00000002491	R3HDM1	100	84.173	Phascolarctos_cinereus
ENSPPAG00000027858	R3HDM1	87	55.474	ENSPFOG00000015036	r3hdm1	94	55.474	Poecilia_formosa
ENSPPAG00000027858	R3HDM1	87	59.947	ENSPLAG00000018042	r3hdm1	91	59.947	Poecilia_latipinna
ENSPPAG00000027858	R3HDM1	87	59.947	ENSPMEG00000023947	r3hdm1	91	59.947	Poecilia_mexicana
ENSPPAG00000027858	R3HDM1	81	68.608	ENSPREG00000007902	r3hdm1	94	60.000	Poecilia_reticulata
ENSPPAG00000027858	R3HDM1	100	98.369	ENSPPYG00000012815	R3HDM1	100	98.096	Pongo_abelii
ENSPPAG00000027858	R3HDM1	100	82.081	ENSPCAG00000006208	R3HDM1	100	81.538	Procavia_capensis
ENSPPAG00000027858	R3HDM1	100	93.669	ENSPCOG00000012698	R3HDM1	100	93.669	Propithecus_coquereli
ENSPPAG00000027858	R3HDM1	100	86.141	ENSPVAG00000006098	R3HDM1	100	86.141	Pteropus_vampyrus
ENSPPAG00000027858	R3HDM1	67	38.710	ENSPNAG00000004162	arpp21	64	45.051	Pygocentrus_nattereri
ENSPPAG00000027858	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSPPAG00000027858	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	95	58.371	Pygocentrus_nattereri
ENSPPAG00000027858	R3HDM1	100	87.346	ENSRNOG00000004099	R3hdm1	100	86.907	Rattus_norvegicus
ENSPPAG00000027858	R3HDM1	100	98.369	ENSRBIG00000033317	R3HDM1	100	99.631	Rhinopithecus_bieti
ENSPPAG00000027858	R3HDM1	100	99.448	ENSRROG00000034534	R3HDM1	100	98.767	Rhinopithecus_roxellana
ENSPPAG00000027858	R3HDM1	100	97.550	ENSSBOG00000020389	R3HDM1	100	97.550	Saimiri_boliviensis_boliviensis
ENSPPAG00000027858	R3HDM1	100	84.011	ENSSHAG00000016999	R3HDM1	100	84.192	Sarcophilus_harrisii
ENSPPAG00000027858	R3HDM1	100	56.738	ENSSFOG00015019851	-	100	56.472	Scleropages_formosus
ENSPPAG00000027858	R3HDM1	89	78.193	ENSSFOG00015014134	r3hdm1	100	70.631	Scleropages_formosus
ENSPPAG00000027858	R3HDM1	99	60.541	ENSSMAG00000001669	r3hdm1	99	45.203	Scophthalmus_maximus
ENSPPAG00000027858	R3HDM1	87	62.766	ENSSDUG00000010749	r3hdm1	91	62.766	Seriola_dumerili
ENSPPAG00000027858	R3HDM1	92	69.231	ENSSLDG00000004499	r3hdm1	91	57.457	Seriola_lalandi_dorsalis
ENSPPAG00000027858	R3HDM1	73	79.783	ENSSARG00000000352	-	69	82.724	Sorex_araneus
ENSPPAG00000027858	R3HDM1	100	80.072	ENSSPUG00000004167	R3HDM1	100	80.162	Sphenodon_punctatus
ENSPPAG00000027858	R3HDM1	87	63.467	ENSSPAG00000004648	r3hdm1	91	63.467	Stegastes_partitus
ENSPPAG00000027858	R3HDM1	100	97.238	ENSSSCG00000015692	R3HDM1	100	95.023	Sus_scrofa
ENSPPAG00000027858	R3HDM1	100	73.760	ENSTGUG00000011750	R3HDM1	100	73.490	Taeniopygia_guttata
ENSPPAG00000027858	R3HDM1	81	67.532	ENSTRUG00000011654	r3hdm1	91	57.841	Takifugu_rubripes
ENSPPAG00000027858	R3HDM1	82	67.732	ENSTNIG00000010362	r3hdm1	99	45.884	Tetraodon_nigroviridis
ENSPPAG00000027858	R3HDM1	100	87.591	ENSTTRG00000003935	R3HDM1	100	87.964	Tursiops_truncatus
ENSPPAG00000027858	R3HDM1	71	96.401	ENSUAMG00000024806	R3HDM1	93	96.401	Ursus_americanus
ENSPPAG00000027858	R3HDM1	100	93.955	ENSUMAG00000005552	R3HDM1	100	94.057	Ursus_maritimus
ENSPPAG00000027858	R3HDM1	97	94.485	ENSVPAG00000007333	R3HDM1	93	91.228	Vicugna_pacos
ENSPPAG00000027858	R3HDM1	100	97.790	ENSVVUG00000006457	R3HDM1	100	92.707	Vulpes_vulpes
ENSPPAG00000027858	R3HDM1	90	67.337	ENSXETG00000019330	r3hdm1	100	67.337	Xenopus_tropicalis
ENSPPAG00000027858	R3HDM1	71	49.936	ENSXCOG00000017448	r3hdm1	94	49.806	Xiphophorus_couchianus
ENSPPAG00000027858	R3HDM1	81	68.285	ENSXMAG00000007885	r3hdm1	88	61.867	Xiphophorus_maculatus