EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000028115 (Gene tree)
Gene ID: 100974363
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 87376 bases
Position: chr10:49588168-49675543
Accession: 100974363
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000009788	DND1_DSRM	PF14709.7	9.8e-25	1	1
ENSPPAP00000009784	DND1_DSRM	PF14709.7	4.7e-16	1	1
ENSPPAP00000009784	RRM_1	PF00076.22	1.8e-40	1	3
ENSPPAP00000009784	RRM_1	PF00076.22	1.8e-40	2	3
ENSPPAP00000009784	RRM_1	PF00076.22	1.8e-40	3	3
ENSPPAP00000009788	RRM_1	PF00076.22	4e-40	1	3
ENSPPAP00000009788	RRM_1	PF00076.22	4e-40	2	3
ENSPPAP00000009788	RRM_1	PF00076.22	4e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000032428	A1CF-201	9240	-	ENSPPAP00000009784	494 (aa)	-	A0A2R9A3D3
ENSPPAT00000032432	A1CF-202	1809	XM_003806331	ENSPPAP00000009788	602 (aa)	XP_003806379	A0A2R9A1M0

Gene Model

Click here to download ENSPPAG00000028115's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000028115's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000028115	A1CF	89	58.628	ENSPPAG00000029763	RBM47	87	68.588
ENSPPAG00000028115	A1CF	74	72.667	ENSPPAG00000043236	RBM46	80	73.118
ENSPPAG00000028115	A1CF	63	52.215	ENSPPAG00000040797	HNRNPR	53	52.215
ENSPPAG00000028115	A1CF	62	52.427	ENSPPAG00000033914	-	78	42.317
ENSPPAG00000028115	A1CF	58	40.830	ENSPPAG00000036250	-	55	38.514

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000028115	A1CF	100	100.000	ENSG00000148584	A1CF	100	100.000	Homo_sapiens
ENSPPAG00000028115	A1CF	99	77.200	ENSAPOG00000008259	a1cf	97	71.747	Acanthochromis_polyacanthus
ENSPPAG00000028115	A1CF	100	96.964	ENSAMEG00000000523	A1CF	97	93.750	Ailuropoda_melanoleuca
ENSPPAG00000028115	A1CF	99	78.193	ENSACIG00000008632	a1cf	97	75.253	Amphilophus_citrinellus
ENSPPAG00000028115	A1CF	99	78.346	ENSAOCG00000023744	a1cf	96	84.348	Amphiprion_ocellaris
ENSPPAG00000028115	A1CF	99	79.528	ENSAPEG00000009537	a1cf	95	75.475	Amphiprion_percula
ENSPPAG00000028115	A1CF	99	79.020	ENSATEG00000013720	a1cf	99	74.388	Anabas_testudineus
ENSPPAG00000028115	A1CF	99	93.117	ENSAPLG00000002964	A1CF	97	87.695	Anas_platyrhynchos
ENSPPAG00000028115	A1CF	99	86.235	ENSACAG00000015269	A1CF	97	81.802	Anolis_carolinensis
ENSPPAG00000028115	A1CF	100	97.368	ENSANAG00000019974	A1CF	100	97.181	Aotus_nancymaae
ENSPPAG00000028115	A1CF	99	77.014	ENSACLG00000017428	a1cf	97	73.986	Astatotilapia_calliptera
ENSPPAG00000028115	A1CF	99	77.510	ENSAMXG00000018180	a1cf	93	78.125	Astyanax_mexicanus
ENSPPAG00000028115	A1CF	100	96.154	ENSBTAG00000021195	A1CF	97	92.803	Bos_taurus
ENSPPAG00000028115	A1CF	100	99.190	ENSCJAG00000005045	A1CF	97	96.880	Callithrix_jacchus
ENSPPAG00000028115	A1CF	99	96.755	ENSCAFG00000015581	A1CF	97	93.576	Canis_familiaris
ENSPPAG00000028115	A1CF	99	96.755	ENSCAFG00020026421	A1CF	98	95.608	Canis_lupus_dingo
ENSPPAG00000028115	A1CF	100	97.166	ENSCHIG00000020411	A1CF	97	93.241	Capra_hircus
ENSPPAG00000028115	A1CF	100	92.857	ENSTSYG00000001755	A1CF	100	95.722	Carlito_syrichta
ENSPPAG00000028115	A1CF	85	95.868	ENSCAPG00000017386	A1CF	89	95.868	Cavia_aperea
ENSPPAG00000028115	A1CF	100	98.178	ENSCPOG00000009807	A1CF	97	93.924	Cavia_porcellus
ENSPPAG00000028115	A1CF	100	99.190	ENSCCAG00000018168	A1CF	100	96.517	Cebus_capucinus
ENSPPAG00000028115	A1CF	100	97.379	ENSCATG00000043715	A1CF	100	94.050	Cercocebus_atys
ENSPPAG00000028115	A1CF	100	97.374	ENSCLAG00000010424	A1CF	97	94.118	Chinchilla_lanigera
ENSPPAG00000028115	A1CF	100	98.988	ENSCSAG00000007032	A1CF	97	96.014	Chlorocebus_sabaeus
ENSPPAG00000028115	A1CF	99	90.365	ENSCHOG00000009089	A1CF	99	90.532	Choloepus_hoffmanni
ENSPPAG00000028115	A1CF	99	92.308	ENSCPBG00000026464	A1CF	97	86.828	Chrysemys_picta_bellii
ENSPPAG00000028115	A1CF	100	98.785	ENSCANG00000038032	A1CF	100	93.148	Colobus_angolensis_palliatus
ENSPPAG00000028115	A1CF	100	96.356	ENSCGRG00001017413	A1cf	97	92.374	Cricetulus_griseus_chok1gshd
ENSPPAG00000028115	A1CF	100	96.356	ENSCGRG00000017332	A1cf	97	91.681	Cricetulus_griseus_crigri
ENSPPAG00000028115	A1CF	99	78.270	ENSCSEG00000002361	a1cf	95	77.233	Cynoglossus_semilaevis
ENSPPAG00000028115	A1CF	99	78.431	ENSCVAG00000010520	a1cf	97	75.462	Cyprinodon_variegatus
ENSPPAG00000028115	A1CF	99	80.962	ENSDARG00000002968	a1cf	97	78.179	Danio_rerio
ENSPPAG00000028115	A1CF	100	97.166	ENSDNOG00000002829	A1CF	97	93.588	Dasypus_novemcinctus
ENSPPAG00000028115	A1CF	82	91.349	ENSETEG00000012527	A1CF	84	91.349	Echinops_telfairi
ENSPPAG00000028115	A1CF	100	98.381	ENSEASG00005012924	A1CF	99	95.147	Equus_asinus_asinus
ENSPPAG00000028115	A1CF	100	97.773	ENSECAG00000010424	A1CF	97	94.128	Equus_caballus
ENSPPAG00000028115	A1CF	84	80.529	ENSEEUG00000000013	A1CF	100	80.043	Erinaceus_europaeus
ENSPPAG00000028115	A1CF	99	82.164	ENSELUG00000003159	a1cf	98	77.665	Esox_lucius
ENSPPAG00000028115	A1CF	100	94.332	ENSFCAG00000011179	A1CF	100	90.365	Felis_catus
ENSPPAG00000028115	A1CF	99	89.069	ENSFALG00000013183	A1CF	97	84.402	Ficedula_albicollis
ENSPPAG00000028115	A1CF	100	95.951	ENSFDAG00000019371	A1CF	97	92.201	Fukomys_damarensis
ENSPPAG00000028115	A1CF	99	71.765	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSPPAG00000028115	A1CF	99	74.155	ENSGMOG00000018943	a1cf	97	70.869	Gadus_morhua
ENSPPAG00000028115	A1CF	94	92.009	ENSGALG00000003765	A1CF	99	83.973	Gallus_gallus
ENSPPAG00000028115	A1CF	95	76.033	ENSGAFG00000014868	a1cf	97	68.930	Gambusia_affinis
ENSPPAG00000028115	A1CF	99	77.381	ENSGACG00000010241	a1cf	98	73.077	Gasterosteus_aculeatus
ENSPPAG00000028115	A1CF	93	92.408	ENSGAGG00000016508	A1CF	98	87.654	Gopherus_agassizii
ENSPPAG00000028115	A1CF	100	100.000	ENSGGOG00000009670	A1CF	100	99.668	Gorilla_gorilla
ENSPPAG00000028115	A1CF	99	77.407	ENSHBUG00000021959	a1cf	97	75.084	Haplochromis_burtoni
ENSPPAG00000028115	A1CF	100	97.571	ENSHGLG00000008955	A1CF	97	94.107	Heterocephalus_glaber_female
ENSPPAG00000028115	A1CF	100	96.761	ENSHGLG00100000518	A1CF	97	93.414	Heterocephalus_glaber_male
ENSPPAG00000028115	A1CF	99	74.609	ENSHCOG00000017669	a1cf	97	71.549	Hippocampus_comes
ENSPPAG00000028115	A1CF	99	84.569	ENSIPUG00000010367	a1cf	93	82.239	Ictalurus_punctatus
ENSPPAG00000028115	A1CF	99	80.906	ENSKMAG00000006568	a1cf	98	75.372	Kryptolebias_marmoratus
ENSPPAG00000028115	A1CF	99	78.794	ENSLBEG00000020994	a1cf	95	75.296	Labrus_bergylta
ENSPPAG00000028115	A1CF	99	85.455	ENSLACG00000008061	A1CF	97	79.828	Latimeria_chalumnae
ENSPPAG00000028115	A1CF	99	86.345	ENSLOCG00000006302	a1cf	97	81.067	Lepisosteus_oculatus
ENSPPAG00000028115	A1CF	100	96.761	ENSLAFG00000015462	A1CF	97	93.068	Loxodonta_africana
ENSPPAG00000028115	A1CF	100	97.782	ENSMFAG00000035948	A1CF	100	94.380	Macaca_fascicularis
ENSPPAG00000028115	A1CF	100	97.368	ENSMMUG00000007077	A1CF	100	96.186	Macaca_mulatta
ENSPPAG00000028115	A1CF	100	98.583	ENSMNEG00000031454	A1CF	100	97.181	Macaca_nemestrina
ENSPPAG00000028115	A1CF	100	98.583	ENSMLEG00000037223	A1CF	100	94.050	Mandrillus_leucophaeus
ENSPPAG00000028115	A1CF	99	76.087	ENSMAMG00000010402	a1cf	95	75.559	Mastacembelus_armatus
ENSPPAG00000028115	A1CF	99	80.282	ENSMZEG00005013245	a1cf	97	75.690	Maylandia_zebra
ENSPPAG00000028115	A1CF	99	91.919	ENSMGAG00000001507	A1CF	97	86.678	Meleagris_gallopavo
ENSPPAG00000028115	A1CF	100	95.547	ENSMAUG00000007422	A1cf	97	91.854	Mesocricetus_auratus
ENSPPAG00000028115	A1CF	100	95.951	ENSMICG00000003377	A1CF	100	91.763	Microcebus_murinus
ENSPPAG00000028115	A1CF	100	95.749	ENSMOCG00000021536	A1cf	97	91.854	Microtus_ochrogaster
ENSPPAG00000028115	A1CF	99	73.622	ENSMMOG00000009422	a1cf	95	68.912	Mola_mola
ENSPPAG00000028115	A1CF	100	90.909	ENSMODG00000016478	A1CF	96	88.258	Monodelphis_domestica
ENSPPAG00000028115	A1CF	99	76.056	ENSMALG00000012992	a1cf	97	70.224	Monopterus_albus
ENSPPAG00000028115	A1CF	100	95.749	MGP_CAROLIEiJ_G0022873	A1cf	97	91.334	Mus_caroli
ENSPPAG00000028115	A1CF	100	95.749	ENSMUSG00000052595	A1cf	99	95.789	Mus_musculus
ENSPPAG00000028115	A1CF	100	95.142	MGP_PahariEiJ_G0014366	A1cf	97	90.641	Mus_pahari
ENSPPAG00000028115	A1CF	100	95.547	MGP_SPRETEiJ_G0023792	A1cf	97	90.815	Mus_spretus
ENSPPAG00000028115	A1CF	100	90.283	ENSMPUG00000016971	A1CF	97	87.847	Mustela_putorius_furo
ENSPPAG00000028115	A1CF	100	96.154	ENSMLUG00000016071	A1CF	97	92.548	Myotis_lucifugus
ENSPPAG00000028115	A1CF	100	97.166	ENSNGAG00000015136	A1cf	97	93.414	Nannospalax_galili
ENSPPAG00000028115	A1CF	99	77.603	ENSNBRG00000001712	a1cf	97	75.421	Neolamprologus_brichardi
ENSPPAG00000028115	A1CF	100	99.393	ENSNLEG00000012028	A1CF	97	97.227	Nomascus_leucogenys
ENSPPAG00000028115	A1CF	93	92.208	ENSMEUG00000015909	A1CF	100	89.680	Notamacropus_eugenii
ENSPPAG00000028115	A1CF	99	85.132	ENSOPRG00000010667	A1CF	94	83.203	Ochotona_princeps
ENSPPAG00000028115	A1CF	99	78.585	ENSONIG00000019105	a1cf	97	74.916	Oreochromis_niloticus
ENSPPAG00000028115	A1CF	94	88.651	ENSOANG00000007360	A1CF	99	88.651	Ornithorhynchus_anatinus
ENSPPAG00000028115	A1CF	100	95.344	ENSOCUG00000011587	A1CF	97	92.042	Oryctolagus_cuniculus
ENSPPAG00000028115	A1CF	99	78.585	ENSORLG00000013342	a1cf	98	71.546	Oryzias_latipes
ENSPPAG00000028115	A1CF	99	78.782	ENSORLG00020000586	a1cf	98	73.554	Oryzias_latipes_hni
ENSPPAG00000028115	A1CF	99	78.978	ENSORLG00015018569	a1cf	98	73.719	Oryzias_latipes_hsok
ENSPPAG00000028115	A1CF	99	77.909	ENSOMEG00000013531	a1cf	99	72.295	Oryzias_melastigma
ENSPPAG00000028115	A1CF	100	97.166	ENSOGAG00000012884	A1CF	97	93.403	Otolemur_garnettii
ENSPPAG00000028115	A1CF	100	97.166	ENSOARG00000013695	A1CF	97	93.241	Ovis_aries
ENSPPAG00000028115	A1CF	100	96.356	ENSPPRG00000012180	A1CF	100	91.196	Panthera_pardus
ENSPPAG00000028115	A1CF	100	96.356	ENSPTIG00000021223	A1CF	100	91.196	Panthera_tigris_altaica
ENSPPAG00000028115	A1CF	100	99.798	ENSPTRG00000002508	A1CF	100	96.013	Pan_troglodytes
ENSPPAG00000028115	A1CF	100	97.782	ENSPANG00000021988	A1CF	100	94.380	Papio_anubis
ENSPPAG00000028115	A1CF	99	84.369	ENSPKIG00000025176	a1cf	98	78.680	Paramormyrops_kingsleyae
ENSPPAG00000028115	A1CF	99	90.081	ENSPSIG00000010318	A1CF	97	85.095	Pelodiscus_sinensis
ENSPPAG00000028115	A1CF	99	72.065	ENSPMGG00000013359	a1cf	94	66.726	Periophthalmus_magnuspinnatus
ENSPPAG00000028115	A1CF	100	96.761	ENSPEMG00000015021	A1cf	97	92.548	Peromyscus_maniculatus_bairdii
ENSPPAG00000028115	A1CF	100	91.919	ENSPCIG00000002175	A1CF	97	88.042	Phascolarctos_cinereus
ENSPPAG00000028115	A1CF	99	79.216	ENSPFOG00000006683	a1cf	97	75.798	Poecilia_formosa
ENSPPAG00000028115	A1CF	99	79.020	ENSPFOG00000007437	-	97	75.630	Poecilia_formosa
ENSPPAG00000028115	A1CF	99	77.647	ENSPLAG00000001210	-	97	74.454	Poecilia_latipinna
ENSPPAG00000028115	A1CF	99	77.647	ENSPLAG00000000026	a1cf	97	74.454	Poecilia_latipinna
ENSPPAG00000028115	A1CF	99	70.079	ENSPMEG00000015529	-	97	67.960	Poecilia_mexicana
ENSPPAG00000028115	A1CF	99	68.701	ENSPMEG00000000921	a1cf	97	66.779	Poecilia_mexicana
ENSPPAG00000028115	A1CF	99	78.824	ENSPREG00000016298	a1cf	95	76.672	Poecilia_reticulata
ENSPPAG00000028115	A1CF	100	97.571	ENSPPYG00000002819	A1CF	97	96.014	Pongo_abelii
ENSPPAG00000028115	A1CF	75	81.452	ENSPCAG00000006463	A1CF	79	73.729	Procavia_capensis
ENSPPAG00000028115	A1CF	100	97.976	ENSPCOG00000024172	A1CF	97	94.637	Propithecus_coquereli
ENSPPAG00000028115	A1CF	99	78.978	ENSPNYG00000017944	a1cf	97	76.431	Pundamilia_nyererei
ENSPPAG00000028115	A1CF	99	83.166	ENSPNAG00000007704	a1cf	97	79.010	Pygocentrus_nattereri
ENSPPAG00000028115	A1CF	100	93.927	ENSRNOG00000033195	A1cf	97	90.295	Rattus_norvegicus
ENSPPAG00000028115	A1CF	100	90.927	ENSRBIG00000042892	A1CF	100	95.303	Rhinopithecus_bieti
ENSPPAG00000028115	A1CF	100	98.988	ENSRROG00000041398	A1CF	99	96.797	Rhinopithecus_roxellana
ENSPPAG00000028115	A1CF	100	99.393	ENSSBOG00000021930	A1CF	100	97.015	Saimiri_boliviensis_boliviensis
ENSPPAG00000028115	A1CF	100	92.323	ENSSHAG00000005096	A1CF	97	88.215	Sarcophilus_harrisii
ENSPPAG00000028115	A1CF	99	83.333	ENSSFOG00015011774	a1cf	93	83.333	Scleropages_formosus
ENSPPAG00000028115	A1CF	99	78.627	ENSSMAG00000013271	a1cf	97	75.294	Scophthalmus_maximus
ENSPPAG00000028115	A1CF	99	79.960	ENSSDUG00000013930	a1cf	95	77.622	Seriola_dumerili
ENSPPAG00000028115	A1CF	99	71.713	ENSSLDG00000004290	a1cf	95	69.565	Seriola_lalandi_dorsalis
ENSPPAG00000028115	A1CF	99	81.681	ENSSARG00000005940	A1CF	99	81.681	Sorex_araneus
ENSPPAG00000028115	A1CF	94	91.416	ENSSPUG00000006797	A1CF	99	84.526	Sphenodon_punctatus
ENSPPAG00000028115	A1CF	99	97.972	ENSSSCG00000010431	A1CF	97	93.934	Sus_scrofa
ENSPPAG00000028115	A1CF	99	91.296	ENSTGUG00000005090	A1CF	97	85.690	Taeniopygia_guttata
ENSPPAG00000028115	A1CF	99	78.585	ENSTRUG00000001982	a1cf	95	75.086	Takifugu_rubripes
ENSPPAG00000028115	A1CF	99	79.061	ENSTNIG00000003580	a1cf	95	75.171	Tetraodon_nigroviridis
ENSPPAG00000028115	A1CF	100	86.733	ENSTTRG00000013190	A1CF	100	86.899	Tursiops_truncatus
ENSPPAG00000028115	A1CF	100	95.142	ENSUAMG00000020065	A1CF	97	92.361	Ursus_americanus
ENSPPAG00000028115	A1CF	100	96.559	ENSUMAG00000011162	A1CF	97	95.009	Ursus_maritimus
ENSPPAG00000028115	A1CF	84	95.673	ENSVPAG00000006130	A1CF	99	80.500	Vicugna_pacos
ENSPPAG00000028115	A1CF	99	95.132	ENSVVUG00000002504	A1CF	97	92.014	Vulpes_vulpes
ENSPPAG00000028115	A1CF	99	80.924	ENSXETG00000006611	a1cf	97	77.108	Xenopus_tropicalis
ENSPPAG00000028115	A1CF	99	79.249	ENSXCOG00000003302	a1cf	95	76.511	Xiphophorus_couchianus
ENSPPAG00000028115	A1CF	99	80.632	ENSXMAG00000016703	a1cf	95	77.720	Xiphophorus_maculatus