EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000028535 (Gene tree)
Gene ID: 100969954
Gene Symbol: SCAF4
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 61384 bases
Position: chr21:31421160-31482543
Accession: 100969954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000010706	RRM_1	PF00076.22	3.9e-09	1	1
ENSPPAP00000010712	RRM_1	PF00076.22	4.3e-09	1	1
ENSPPAP00000010702	RRM_1	PF00076.22	4.5e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000033355	SCAF4-201	4215	XM_003813224	ENSPPAP00000010702	1147 (aa)	XP_003813272	A0A2R9A0E8
ENSPPAT00000033359	SCAF4-202	3399	-	ENSPPAP00000010706	1132 (aa)	-	A0A2R9A0C9
ENSPPAT00000033365	SCAF4-203	3327	-	ENSPPAP00000010712	1108 (aa)	-	A0A2R9A0F7

Gene Model

Click here to download ENSPPAG00000028535's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000028535's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000028535	SCAF4	100	100.000	ENSG00000156304	SCAF4	100	100.000	Homo_sapiens
ENSPPAG00000028535	SCAF4	79	53.682	ENSAPOG00000002946	scaf4a	55	57.251	Acanthochromis_polyacanthus
ENSPPAG00000028535	SCAF4	52	52.203	ENSAPOG00000019615	scaf4b	59	59.641	Acanthochromis_polyacanthus
ENSPPAG00000028535	SCAF4	75	93.261	ENSAMEG00000014987	SCAF4	96	94.224	Ailuropoda_melanoleuca
ENSPPAG00000028535	SCAF4	69	57.031	ENSAOCG00000000615	scaf4a	55	58.761	Amphiprion_ocellaris
ENSPPAG00000028535	SCAF4	69	57.031	ENSAPEG00000021229	scaf4a	55	58.610	Amphiprion_percula
ENSPPAG00000028535	SCAF4	99	75.413	ENSAPLG00000002509	SCAF4	59	83.308	Anas_platyrhynchos
ENSPPAG00000028535	SCAF4	96	69.161	ENSACAG00000002569	SCAF4	52	84.146	Anolis_carolinensis
ENSPPAG00000028535	SCAF4	100	98.433	ENSANAG00000037494	SCAF4	100	98.433	Aotus_nancymaae
ENSPPAG00000028535	SCAF4	93	50.000	ENSAMXG00000008585	scaf4a	60	63.102	Astyanax_mexicanus
ENSPPAG00000028535	SCAF4	100	92.515	ENSBTAG00000018855	SCAF4	100	92.254	Bos_taurus
ENSPPAG00000028535	SCAF4	100	98.348	ENSCJAG00000008993	SCAF4	100	98.348	Callithrix_jacchus
ENSPPAG00000028535	SCAF4	99	94.732	ENSCAFG00000008863	SCAF4	99	94.732	Canis_familiaris
ENSPPAG00000028535	SCAF4	99	91.262	ENSCAFG00020026019	SCAF4	100	94.187	Canis_lupus_dingo
ENSPPAG00000028535	SCAF4	100	91.934	ENSCHIG00000008385	SCAF4	100	91.847	Capra_hircus
ENSPPAG00000028535	SCAF4	91	96.141	ENSTSYG00000011344	SCAF4	99	96.141	Carlito_syrichta
ENSPPAG00000028535	SCAF4	100	89.569	ENSCPOG00000012443	SCAF4	100	89.828	Cavia_porcellus
ENSPPAG00000028535	SCAF4	100	98.518	ENSCCAG00000033727	SCAF4	100	98.518	Cebus_capucinus
ENSPPAG00000028535	SCAF4	100	98.094	ENSCATG00000030379	SCAF4	100	98.094	Cercocebus_atys
ENSPPAG00000028535	SCAF4	99	90.712	ENSCLAG00000006298	SCAF4	100	91.927	Chinchilla_lanigera
ENSPPAG00000028535	SCAF4	100	98.523	ENSCSAG00000009438	SCAF4	100	98.523	Chlorocebus_sabaeus
ENSPPAG00000028535	SCAF4	100	98.780	ENSCANG00000029847	SCAF4	100	98.780	Colobus_angolensis_palliatus
ENSPPAG00000028535	SCAF4	99	83.099	ENSCGRG00001020821	Scaf4	100	82.850	Cricetulus_griseus_chok1gshd
ENSPPAG00000028535	SCAF4	99	82.876	ENSCGRG00000014360	Scaf4	99	85.783	Cricetulus_griseus_crigri
ENSPPAG00000028535	SCAF4	79	52.442	ENSCSEG00000019549	scaf4a	53	54.697	Cynoglossus_semilaevis
ENSPPAG00000028535	SCAF4	58	56.849	ENSCSEG00000012808	-	61	60.500	Cynoglossus_semilaevis
ENSPPAG00000028535	SCAF4	72	57.317	ENSDARG00000077093	scaf4a	54	54.441	Danio_rerio
ENSPPAG00000028535	SCAF4	100	90.410	ENSDNOG00000019014	SCAF4	94	90.497	Dasypus_novemcinctus
ENSPPAG00000028535	SCAF4	92	97.436	ENSETEG00000000583	SCAF4	94	97.436	Echinops_telfairi
ENSPPAG00000028535	SCAF4	100	93.723	ENSEASG00005007756	SCAF4	100	93.897	Equus_asinus_asinus
ENSPPAG00000028535	SCAF4	100	94.071	ENSECAG00000014248	SCAF4	100	93.984	Equus_caballus
ENSPPAG00000028535	SCAF4	58	52.703	ENSELUG00000002779	SCAF8	61	68.116	Esox_lucius
ENSPPAG00000028535	SCAF4	100	94.118	ENSFCAG00000002228	SCAF4	100	94.118	Felis_catus
ENSPPAG00000028535	SCAF4	99	89.741	ENSFDAG00000017780	SCAF4	100	89.569	Fukomys_damarensis
ENSPPAG00000028535	SCAF4	100	76.537	ENSGALG00000033965	SCAF4	59	83.537	Gallus_gallus
ENSPPAG00000028535	SCAF4	70	55.270	ENSGACG00000020580	scaf4a	54	70.122	Gasterosteus_aculeatus
ENSPPAG00000028535	SCAF4	91	96.556	ENSGGOG00000015557	SCAF4	100	100.000	Gorilla_gorilla
ENSPPAG00000028535	SCAF4	100	90.870	ENSHGLG00000010582	SCAF4	100	91.559	Heterocephalus_glaber_female
ENSPPAG00000028535	SCAF4	99	90.759	ENSHGLG00100009441	SCAF4	100	91.456	Heterocephalus_glaber_male
ENSPPAG00000028535	SCAF4	69	49.770	ENSIPUG00000011285	scaf4	63	63.514	Ictalurus_punctatus
ENSPPAG00000028535	SCAF4	99	87.811	ENSSTOG00000004450	SCAF4	100	88.167	Ictidomys_tridecemlineatus
ENSPPAG00000028535	SCAF4	99	88.938	ENSJJAG00000019447	Scaf4	99	89.464	Jaculus_jaculus
ENSPPAG00000028535	SCAF4	99	59.965	ENSLACG00000013913	SCAF4	59	69.749	Latimeria_chalumnae
ENSPPAG00000028535	SCAF4	95	57.988	ENSLOCG00000009162	scaf4a	59	67.953	Lepisosteus_oculatus
ENSPPAG00000028535	SCAF4	99	92.935	ENSLAFG00000010710	SCAF4	100	92.032	Loxodonta_africana
ENSPPAG00000028535	SCAF4	100	98.268	ENSMFAG00000037668	SCAF4	100	98.268	Macaca_fascicularis
ENSPPAG00000028535	SCAF4	100	98.182	ENSMMUG00000001712	SCAF4	100	98.182	Macaca_mulatta
ENSPPAG00000028535	SCAF4	100	98.097	ENSMNEG00000032966	SCAF4	100	98.097	Macaca_nemestrina
ENSPPAG00000028535	SCAF4	99	98.338	ENSMLEG00000039674	SCAF4	100	98.338	Mandrillus_leucophaeus
ENSPPAG00000028535	SCAF4	99	76.281	ENSMGAG00000014515	SCAF4	59	83.462	Meleagris_gallopavo
ENSPPAG00000028535	SCAF4	99	88.370	ENSMAUG00000013307	Scaf4	100	88.811	Mesocricetus_auratus
ENSPPAG00000028535	SCAF4	100	96.949	ENSMICG00000005256	SCAF4	100	96.949	Microcebus_murinus
ENSPPAG00000028535	SCAF4	100	85.702	ENSMOCG00000012087	Scaf4	95	92.218	Microtus_ochrogaster
ENSPPAG00000028535	SCAF4	100	84.609	ENSMODG00000021040	SCAF4	100	83.739	Monodelphis_domestica
ENSPPAG00000028535	SCAF4	100	83.510	MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	Mus_caroli
ENSPPAG00000028535	SCAF4	100	83.470	ENSMUSG00000022983	Scaf4	95	89.909	Mus_musculus
ENSPPAG00000028535	SCAF4	100	82.792	MGP_PahariEiJ_G0016649	Scaf4	100	86.667	Mus_pahari
ENSPPAG00000028535	SCAF4	100	84.319	MGP_SPRETEiJ_G0021850	Scaf4	100	86.091	Mus_spretus
ENSPPAG00000028535	SCAF4	100	92.641	ENSMPUG00000001078	SCAF4	100	92.554	Mustela_putorius_furo
ENSPPAG00000028535	SCAF4	99	77.639	ENSMLUG00000011472	SCAF4	79	83.424	Myotis_lucifugus
ENSPPAG00000028535	SCAF4	99	91.579	ENSNGAG00000005214	Scaf4	99	91.339	Nannospalax_galili
ENSPPAG00000028535	SCAF4	100	99.303	ENSNLEG00000003569	SCAF4	100	99.303	Nomascus_leucogenys
ENSPPAG00000028535	SCAF4	84	90.217	ENSOPRG00000007016	SCAF4	77	90.217	Ochotona_princeps
ENSPPAG00000028535	SCAF4	100	89.316	ENSODEG00000002718	SCAF4	100	89.060	Octodon_degus
ENSPPAG00000028535	SCAF4	71	59.690	ENSONIG00000004687	scaf4a	51	73.780	Oreochromis_niloticus
ENSPPAG00000028535	SCAF4	100	89.014	ENSOCUG00000008336	SCAF4	100	89.100	Oryctolagus_cuniculus
ENSPPAG00000028535	SCAF4	52	57.480	ENSORLG00000003420	scaf4b	66	58.650	Oryzias_latipes
ENSPPAG00000028535	SCAF4	99	95.839	ENSOGAG00000014653	SCAF4	94	95.586	Otolemur_garnettii
ENSPPAG00000028535	SCAF4	99	91.339	ENSOARG00000013894	SCAF4	99	90.964	Ovis_aries
ENSPPAG00000028535	SCAF4	99	94.143	ENSPPRG00000000635	SCAF4	100	94.143	Panthera_pardus
ENSPPAG00000028535	SCAF4	99	91.029	ENSPTIG00000021578	SCAF4	99	88.869	Panthera_tigris_altaica
ENSPPAG00000028535	SCAF4	100	100.000	ENSPTRG00000013848	SCAF4	100	100.000	Pan_troglodytes
ENSPPAG00000028535	SCAF4	100	98.268	ENSPANG00000017332	SCAF4	100	98.268	Papio_anubis
ENSPPAG00000028535	SCAF4	64	64.512	ENSPKIG00000022408	scaf4a	90	66.966	Paramormyrops_kingsleyae
ENSPPAG00000028535	SCAF4	99	77.145	ENSPSIG00000014242	SCAF4	57	84.520	Pelodiscus_sinensis
ENSPPAG00000028535	SCAF4	61	87.231	ENSPCIG00000028183	SCAF4	91	81.794	Phascolarctos_cinereus
ENSPPAG00000028535	SCAF4	100	99.477	ENSPPYG00000011355	SCAF4	100	99.477	Pongo_abelii
ENSPPAG00000028535	SCAF4	100	95.917	ENSPCOG00000018710	SCAF4	100	96.177	Propithecus_coquereli
ENSPPAG00000028535	SCAF4	100	92.677	ENSPVAG00000005220	SCAF4	100	92.851	Pteropus_vampyrus
ENSPPAG00000028535	SCAF4	76	57.705	ENSPNAG00000016892	scaf4a	60	63.922	Pygocentrus_nattereri
ENSPPAG00000028535	SCAF4	98	86.933	ENSRNOG00000002104	Scaf4	95	86.923	Rattus_norvegicus
ENSPPAG00000028535	SCAF4	99	96.053	ENSRBIG00000040007	SCAF4	99	96.759	Rhinopithecus_bieti
ENSPPAG00000028535	SCAF4	100	98.867	ENSRROG00000029488	SCAF4	100	98.867	Rhinopithecus_roxellana
ENSPPAG00000028535	SCAF4	100	84.059	ENSSHAG00000001581	SCAF4	100	82.927	Sarcophilus_harrisii
ENSPPAG00000028535	SCAF4	89	47.707	ENSSFOG00015006338	scaf4a	54	59.847	Scleropages_formosus
ENSPPAG00000028535	SCAF4	65	58.423	ENSSMAG00000003738	scaf4b	54	71.519	Scophthalmus_maximus
ENSPPAG00000028535	SCAF4	57	61.290	ENSSDUG00000012380	scaf4b	54	70.886	Seriola_dumerili
ENSPPAG00000028535	SCAF4	57	61.290	ENSSLDG00000023152	-	54	70.886	Seriola_lalandi_dorsalis
ENSPPAG00000028535	SCAF4	100	89.004	ENSSARG00000009994	SCAF4	100	89.177	Sorex_araneus
ENSPPAG00000028535	SCAF4	100	90.595	ENSSSCG00000021023	SCAF4	100	90.854	Sus_scrofa
ENSPPAG00000028535	SCAF4	74	72.570	ENSTGUG00000013464	SCAF4	57	86.047	Taeniopygia_guttata
ENSPPAG00000028535	SCAF4	51	58.451	ENSTRUG00000009536	-	65	57.818	Takifugu_rubripes
ENSPPAG00000028535	SCAF4	99	92.524	ENSTTRG00000010963	SCAF4	100	92.172	Tursiops_truncatus
ENSPPAG00000028535	SCAF4	100	92.689	ENSUAMG00000008860	SCAF4	100	92.689	Ursus_americanus
ENSPPAG00000028535	SCAF4	99	92.343	ENSUMAG00000016962	SCAF4	100	91.792	Ursus_maritimus
ENSPPAG00000028535	SCAF4	99	94.797	ENSVVUG00000002953	SCAF4	100	94.797	Vulpes_vulpes
ENSPPAG00000028535	SCAF4	99	55.796	ENSXETG00000007351	scaf4	63	66.619	Xenopus_tropicalis