EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000029271 (Gene tree)
Gene ID: 100972536
Gene Symbol: LSG1
Alias: -
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 31057 bases
Position: chr3:202247591-202278647
Accession: 100972536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000012161	MMR_HSR1	PF01926.23	6e-14	1	1
ENSPPAP00000012172	MMR_HSR1	PF01926.23	6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000034836	LSG1-203	519	-	ENSPPAP00000012174	172 (aa)	-	A0A2R9A5L5
ENSPPAT00000034823	LSG1-201	3834	XM_003807643	ENSPPAP00000012161	658 (aa)	XP_003807691	A0A2R9A9Q4
ENSPPAT00000034833	LSG1-202	1974	-	ENSPPAP00000012172	657 (aa)	-	A0A2R9A4E2

Gene Model

Click here to download ENSPPAG00000029271's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000029271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000029271	LSG1	100	97.872	ENSG00000041802	LSG1	100	97.872	Homo_sapiens
ENSPPAG00000029271	LSG1	99	64.545	ENSAPOG00000009694	lsg1	99	64.848	Acanthochromis_polyacanthus
ENSPPAG00000029271	LSG1	99	82.853	ENSAMEG00000009343	LSG1	99	82.853	Ailuropoda_melanoleuca
ENSPPAG00000029271	LSG1	98	65.528	ENSACIG00000012406	lsg1	99	65.297	Amphilophus_citrinellus
ENSPPAG00000029271	LSG1	99	63.939	ENSAOCG00000016066	lsg1	99	64.545	Amphiprion_ocellaris
ENSPPAG00000029271	LSG1	99	64.091	ENSAPEG00000003252	lsg1	99	64.242	Amphiprion_percula
ENSPPAG00000029271	LSG1	98	65.062	ENSATEG00000011794	lsg1	99	64.992	Anabas_testudineus
ENSPPAG00000029271	LSG1	95	65.452	ENSACAG00000004222	LSG1	99	65.610	Anolis_carolinensis
ENSPPAG00000029271	LSG1	100	93.617	ENSANAG00000021153	LSG1	100	93.617	Aotus_nancymaae
ENSPPAG00000029271	LSG1	99	63.229	ENSACLG00000000520	lsg1	99	64.318	Astatotilapia_calliptera
ENSPPAG00000029271	LSG1	99	63.158	ENSAMXG00000008271	lsg1	99	63.623	Astyanax_mexicanus
ENSPPAG00000029271	LSG1	100	84.674	ENSBTAG00000008461	LSG1	100	84.977	Bos_taurus
ENSPPAG00000029271	LSG1	78	45.455	WBGene00016907	C53H9.2	95	58.871	Caenorhabditis_elegans
ENSPPAG00000029271	LSG1	100	92.553	ENSCJAG00000013962	LSG1	100	92.553	Callithrix_jacchus
ENSPPAG00000029271	LSG1	95	84.640	ENSCAFG00000013445	LSG1	99	84.640	Canis_familiaris
ENSPPAG00000029271	LSG1	99	83.207	ENSCAFG00020002216	LSG1	99	84.270	Canis_lupus_dingo
ENSPPAG00000029271	LSG1	99	84.498	ENSCHIG00000015769	LSG1	99	84.498	Capra_hircus
ENSPPAG00000029271	LSG1	100	88.771	ENSTSYG00000001447	LSG1	100	88.771	Carlito_syrichta
ENSPPAG00000029271	LSG1	95	76.592	ENSCAPG00000009856	LSG1	100	77.070	Cavia_aperea
ENSPPAG00000029271	LSG1	100	92.097	ENSCCAG00000035744	LSG1	100	92.097	Cebus_capucinus
ENSPPAG00000029271	LSG1	100	94.985	ENSCATG00000042060	LSG1	100	94.216	Cercocebus_atys
ENSPPAG00000029271	LSG1	100	95.441	ENSCSAG00000008796	LSG1	92	95.441	Chlorocebus_sabaeus
ENSPPAG00000029271	LSG1	99	70.210	ENSCPBG00000015941	LSG1	83	71.729	Chrysemys_picta_bellii
ENSPPAG00000029271	LSG1	66	62.304	ENSCING00000007079	-	92	62.304	Ciona_intestinalis
ENSPPAG00000029271	LSG1	84	49.369	ENSCSAVG00000002514	-	96	55.967	Ciona_savignyi
ENSPPAG00000029271	LSG1	100	95.593	ENSCANG00000030709	LSG1	100	95.593	Colobus_angolensis_palliatus
ENSPPAG00000029271	LSG1	100	81.818	ENSCGRG00001019846	Lsg1	100	81.818	Cricetulus_griseus_chok1gshd
ENSPPAG00000029271	LSG1	100	81.818	ENSCGRG00000014617	Lsg1	100	81.818	Cricetulus_griseus_crigri
ENSPPAG00000029271	LSG1	98	64.253	ENSCSEG00000008522	lsg1	99	63.746	Cynoglossus_semilaevis
ENSPPAG00000029271	LSG1	97	66.719	ENSCVAG00000002484	lsg1	99	66.970	Cyprinodon_variegatus
ENSPPAG00000029271	LSG1	99	67.375	ENSDARG00000015352	lsg1	99	67.316	Danio_rerio
ENSPPAG00000029271	LSG1	100	84.894	ENSDNOG00000006224	LSG1	100	84.894	Dasypus_novemcinctus
ENSPPAG00000029271	LSG1	82	57.377	FBgn0266284	Ns3	91	56.031	Drosophila_melanogaster
ENSPPAG00000029271	LSG1	89	88.000	ENSETEG00000003888	LSG1	89	88.000	Echinops_telfairi
ENSPPAG00000029271	LSG1	88	57.833	ENSEBUG00000003119	lsg1	85	57.983	Eptatretus_burgeri
ENSPPAG00000029271	LSG1	100	85.888	ENSEASG00005000678	LSG1	100	85.888	Equus_asinus_asinus
ENSPPAG00000029271	LSG1	100	86.039	ENSECAG00000017659	LSG1	100	86.039	Equus_caballus
ENSPPAG00000029271	LSG1	87	83.621	ENSEEUG00000015217	LSG1	87	83.621	Erinaceus_europaeus
ENSPPAG00000029271	LSG1	99	63.142	ENSELUG00000023973	lsg1	99	62.969	Esox_lucius
ENSPPAG00000029271	LSG1	99	85.410	ENSFCAG00000024957	LSG1	99	85.410	Felis_catus
ENSPPAG00000029271	LSG1	92	66.395	ENSFALG00000007210	LSG1	94	66.395	Ficedula_albicollis
ENSPPAG00000029271	LSG1	100	78.875	ENSFDAG00000017373	LSG1	100	78.875	Fukomys_damarensis
ENSPPAG00000029271	LSG1	97	64.407	ENSFHEG00000003680	lsg1	99	64.264	Fundulus_heteroclitus
ENSPPAG00000029271	LSG1	81	72.766	ENSGMOG00000015834	lsg1	87	71.084	Gadus_morhua
ENSPPAG00000029271	LSG1	99	64.599	ENSGALG00000007058	LSG1	87	65.060	Gallus_gallus
ENSPPAG00000029271	LSG1	97	66.459	ENSGAFG00000015831	lsg1	99	66.210	Gambusia_affinis
ENSPPAG00000029271	LSG1	98	62.709	ENSGACG00000009323	lsg1	99	62.537	Gasterosteus_aculeatus
ENSPPAG00000029271	LSG1	100	98.328	ENSGGOG00000000520	LSG1	100	98.328	Gorilla_gorilla
ENSPPAG00000029271	LSG1	99	64.103	ENSHBUG00000005659	lsg1	99	64.706	Haplochromis_burtoni
ENSPPAG00000029271	LSG1	100	77.225	ENSHGLG00000017390	LSG1	100	77.828	Heterocephalus_glaber_female
ENSPPAG00000029271	LSG1	100	77.074	ENSHGLG00100018587	LSG1	100	77.677	Heterocephalus_glaber_male
ENSPPAG00000029271	LSG1	97	64.142	ENSHCOG00000016848	lsg1	99	64.103	Hippocampus_comes
ENSPPAG00000029271	LSG1	99	65.402	ENSIPUG00000008631	lsg1	99	65.512	Ictalurus_punctatus
ENSPPAG00000029271	LSG1	90	79.388	ENSSTOG00000010234	LSG1	100	82.062	Ictidomys_tridecemlineatus
ENSPPAG00000029271	LSG1	100	80.514	ENSJJAG00000015513	Lsg1	100	80.514	Jaculus_jaculus
ENSPPAG00000029271	LSG1	98	63.426	ENSKMAG00000009681	lsg1	99	63.086	Kryptolebias_marmoratus
ENSPPAG00000029271	LSG1	99	65.255	ENSLACG00000013399	LSG1	99	65.255	Latimeria_chalumnae
ENSPPAG00000029271	LSG1	98	67.233	ENSLOCG00000004918	lsg1	99	66.868	Lepisosteus_oculatus
ENSPPAG00000029271	LSG1	100	83.460	ENSLAFG00000012919	-	100	83.460	Loxodonta_africana
ENSPPAG00000029271	LSG1	100	95.289	ENSMFAG00000039903	LSG1	100	94.521	Macaca_fascicularis
ENSPPAG00000029271	LSG1	100	95.441	ENSMMUG00000010708	LSG1	100	95.441	Macaca_mulatta
ENSPPAG00000029271	LSG1	100	95.137	ENSMNEG00000031538	LSG1	100	94.216	Macaca_nemestrina
ENSPPAG00000029271	LSG1	100	95.441	ENSMLEG00000041184	LSG1	100	95.441	Mandrillus_leucophaeus
ENSPPAG00000029271	LSG1	99	62.727	ENSMAMG00000000470	lsg1	99	62.727	Mastacembelus_armatus
ENSPPAG00000029271	LSG1	99	63.623	ENSMZEG00005017865	lsg1	99	64.222	Maylandia_zebra
ENSPPAG00000029271	LSG1	89	66.269	ENSMGAG00000007050	LSG1	99	66.441	Meleagris_gallopavo
ENSPPAG00000029271	LSG1	91	79.768	ENSMAUG00000016976	Lsg1	93	80.431	Mesocricetus_auratus
ENSPPAG00000029271	LSG1	100	85.432	ENSMICG00000049087	LSG1	100	85.432	Microcebus_murinus
ENSPPAG00000029271	LSG1	100	79.909	ENSMOCG00000022136	Lsg1	100	80.363	Microtus_ochrogaster
ENSPPAG00000029271	LSG1	83	72.848	ENSMMOG00000008884	lsg1	99	68.571	Mola_mola
ENSPPAG00000029271	LSG1	99	58.974	ENSMODG00000019828	LSG1	99	59.276	Monodelphis_domestica
ENSPPAG00000029271	LSG1	100	81.307	MGP_CAROLIEiJ_G0020648	Lsg1	100	81.307	Mus_caroli
ENSPPAG00000029271	LSG1	100	81.459	ENSMUSG00000022538	Lsg1	100	81.459	Mus_musculus
ENSPPAG00000029271	LSG1	98	81.636	MGP_PahariEiJ_G0016352	Lsg1	100	81.639	Mus_pahari
ENSPPAG00000029271	LSG1	100	81.459	MGP_SPRETEiJ_G0021544	Lsg1	100	81.459	Mus_spretus
ENSPPAG00000029271	LSG1	99	83.587	ENSMPUG00000003734	LSG1	99	83.587	Mustela_putorius_furo
ENSPPAG00000029271	LSG1	99	85.281	ENSMLUG00000012548	LSG1	99	85.281	Myotis_lucifugus
ENSPPAG00000029271	LSG1	100	81.335	ENSNGAG00000021872	Lsg1	100	81.335	Nannospalax_galili
ENSPPAG00000029271	LSG1	100	95.586	ENSNLEG00000008293	LSG1	100	95.586	Nomascus_leucogenys
ENSPPAG00000029271	LSG1	69	70.028	ENSMEUG00000009041	-	84	70.028	Notamacropus_eugenii
ENSPPAG00000029271	LSG1	99	63.897	ENSONIG00000002635	lsg1	99	64.339	Oreochromis_niloticus
ENSPPAG00000029271	LSG1	95	72.089	ENSOANG00000012742	LSG1	99	72.089	Ornithorhynchus_anatinus
ENSPPAG00000029271	LSG1	100	85.584	ENSOCUG00000004817	LSG1	100	85.584	Oryctolagus_cuniculus
ENSPPAG00000029271	LSG1	98	63.975	ENSORLG00000007695	lsg1	99	63.623	Oryzias_latipes
ENSPPAG00000029271	LSG1	98	63.820	ENSORLG00020016286	lsg1	99	63.318	Oryzias_latipes_hni
ENSPPAG00000029271	LSG1	98	63.975	ENSORLG00015012025	lsg1	99	63.623	Oryzias_latipes_hsok
ENSPPAG00000029271	LSG1	98	62.326	ENSOMEG00000022379	lsg1	99	62.387	Oryzias_melastigma
ENSPPAG00000029271	LSG1	100	85.650	ENSOGAG00000003475	LSG1	100	85.650	Otolemur_garnettii
ENSPPAG00000029271	LSG1	99	84.370	ENSOARG00000020403	LSG1	99	84.674	Ovis_aries
ENSPPAG00000029271	LSG1	99	84.962	ENSPPRG00000010281	LSG1	99	84.962	Panthera_pardus
ENSPPAG00000029271	LSG1	99	85.714	ENSPTIG00000010789	LSG1	99	85.714	Panthera_tigris_altaica
ENSPPAG00000029271	LSG1	100	99.696	ENSPTRG00000015760	LSG1	100	99.696	Pan_troglodytes
ENSPPAG00000029271	LSG1	100	95.289	ENSPANG00000018249	LSG1	100	94.521	Papio_anubis
ENSPPAG00000029271	LSG1	96	65.361	ENSPKIG00000002895	lsg1	100	64.404	Paramormyrops_kingsleyae
ENSPPAG00000029271	LSG1	96	65.839	ENSPSIG00000009821	LSG1	99	65.839	Pelodiscus_sinensis
ENSPPAG00000029271	LSG1	95	65.287	ENSPMGG00000000931	lsg1	99	65.287	Periophthalmus_magnuspinnatus
ENSPPAG00000029271	LSG1	100	81.269	ENSPEMG00000012082	-	100	81.269	Peromyscus_maniculatus_bairdii
ENSPPAG00000029271	LSG1	99	60.352	ENSPMAG00000007451	lsg1	99	60.352	Petromyzon_marinus
ENSPPAG00000029271	LSG1	99	67.016	ENSPCIG00000013890	LSG1	82	67.016	Phascolarctos_cinereus
ENSPPAG00000029271	LSG1	97	66.667	ENSPFOG00000021882	lsg1	99	66.415	Poecilia_formosa
ENSPPAG00000029271	LSG1	97	65.426	ENSPLAG00000019536	lsg1	99	65.658	Poecilia_latipinna
ENSPPAG00000029271	LSG1	97	65.842	ENSPMEG00000017281	lsg1	99	65.611	Poecilia_mexicana
ENSPPAG00000029271	LSG1	97	55.251	ENSPREG00000006048	lsg1	99	56.018	Poecilia_reticulata
ENSPPAG00000029271	LSG1	92	95.058	ENSPPYG00000014425	LSG1	100	95.058	Pongo_abelii
ENSPPAG00000029271	LSG1	91	88.000	ENSPCAG00000005511	LSG1	90	88.000	Procavia_capensis
ENSPPAG00000029271	LSG1	100	87.102	ENSPCOG00000012360	LSG1	100	87.102	Propithecus_coquereli
ENSPPAG00000029271	LSG1	99	63.079	ENSPNYG00000021994	lsg1	99	64.168	Pundamilia_nyererei
ENSPPAG00000029271	LSG1	99	65.158	ENSPNAG00000015533	lsg1	99	65.158	Pygocentrus_nattereri
ENSPPAG00000029271	LSG1	100	81.900	ENSRNOG00000001727	Lsg1	100	81.900	Rattus_norvegicus
ENSPPAG00000029271	LSG1	100	94.529	ENSRBIG00000029053	LSG1	100	94.529	Rhinopithecus_bieti
ENSPPAG00000029271	LSG1	100	94.529	ENSRROG00000037702	LSG1	100	94.529	Rhinopithecus_roxellana
ENSPPAG00000029271	LSG1	66	58.084	YGL099W	LSG1	68	58.084	Saccharomyces_cerevisiae
ENSPPAG00000029271	LSG1	100	93.313	ENSSBOG00000034938	LSG1	100	93.313	Saimiri_boliviensis_boliviensis
ENSPPAG00000029271	LSG1	79	66.730	ENSSHAG00000003487	LSG1	99	66.985	Sarcophilus_harrisii
ENSPPAG00000029271	LSG1	98	64.396	ENSSFOG00015008955	lsg1	99	63.922	Scleropages_formosus
ENSPPAG00000029271	LSG1	98	64.134	ENSSDUG00000004622	lsg1	99	64.531	Seriola_dumerili
ENSPPAG00000029271	LSG1	98	64.043	ENSSLDG00000010869	lsg1	99	64.297	Seriola_lalandi_dorsalis
ENSPPAG00000029271	LSG1	81	83.529	ENSSARG00000012981	LSG1	84	82.682	Sorex_araneus
ENSPPAG00000029271	LSG1	91	77.049	ENSSPUG00000016347	LSG1	99	77.049	Sphenodon_punctatus
ENSPPAG00000029271	LSG1	99	63.182	ENSSPAG00000005508	lsg1	99	64.242	Stegastes_partitus
ENSPPAG00000029271	LSG1	99	83.587	ENSSSCG00000011827	LSG1	99	83.739	Sus_scrofa
ENSPPAG00000029271	LSG1	89	64.120	ENSTGUG00000009068	LSG1	99	64.120	Taeniopygia_guttata
ENSPPAG00000029271	LSG1	97	61.778	ENSTRUG00000017380	lsg1	99	61.492	Takifugu_rubripes
ENSPPAG00000029271	LSG1	97	65.278	ENSTNIG00000015570	lsg1	99	64.804	Tetraodon_nigroviridis
ENSPPAG00000029271	LSG1	99	77.542	ENSTTRG00000000559	LSG1	99	77.542	Tursiops_truncatus
ENSPPAG00000029271	LSG1	99	84.043	ENSUAMG00000012454	LSG1	99	84.043	Ursus_americanus
ENSPPAG00000029271	LSG1	99	84.043	ENSUMAG00000000855	LSG1	99	84.043	Ursus_maritimus
ENSPPAG00000029271	LSG1	95	80.320	ENSVPAG00000012400	LSG1	99	80.320	Vicugna_pacos
ENSPPAG00000029271	LSG1	95	83.840	ENSVVUG00000008956	LSG1	97	83.840	Vulpes_vulpes
ENSPPAG00000029271	LSG1	99	65.865	ENSXETG00000003451	lsg1	99	66.820	Xenopus_tropicalis
ENSPPAG00000029271	LSG1	97	65.438	ENSXCOG00000003239	lsg1	99	65.217	Xiphophorus_couchianus
ENSPPAG00000029271	LSG1	97	65.421	ENSXMAG00000005536	lsg1	99	65.198	Xiphophorus_maculatus