EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000034647 (Gene tree)
Gene ID: 100987223
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 77567 bases
Position: chrX:128875334-128952900
Accession: 100987223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000023115	ResIII	PF04851.15	8.1e-12	1	1
ENSPPAP00000023087	ResIII	PF04851.15	8.1e-12	1	1
ENSPPAP00000023087	DEAD	PF00270.29	1.5e-06	1	1
ENSPPAP00000023115	DEAD	PF00270.29	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000045935	SMARCA1-202	3213	XM_003818925	ENSPPAP00000023115	1070 (aa)	XP_003818973	A0A2R9B0H8
ENSPPAT00000045907	SMARCA1-201	4691	XM_003818924	ENSPPAP00000023087	1058 (aa)	XP_003818972	A0A2R9B6Z0

Gene Model

Click here to download ENSPPAG00000034647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000034647's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000034647	SMARCA1	54	42.955	ENSPPAG00000039193	CHD1L	63	44.134
ENSPPAG00000034647	SMARCA1	50	47.809	ENSPPAG00000001726	HELLS	78	47.809
ENSPPAG00000034647	SMARCA1	93	84.934	ENSPPAG00000028523	SMARCA5	99	84.934

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000034647	SMARCA1	100	100.000	ENSG00000102038	SMARCA1	100	100.000	Homo_sapiens
ENSPPAG00000034647	SMARCA1	92	83.709	ENSAPOG00000016035	smarca5	98	84.026	Acanthochromis_polyacanthus
ENSPPAG00000034647	SMARCA1	100	97.009	ENSAMEG00000015218	SMARCA1	100	97.009	Ailuropoda_melanoleuca
ENSPPAG00000034647	SMARCA1	85	84.053	ENSACIG00000016982	smarca5	99	84.152	Amphilophus_citrinellus
ENSPPAG00000034647	SMARCA1	92	83.709	ENSAOCG00000015578	smarca5	95	82.762	Amphiprion_ocellaris
ENSPPAG00000034647	SMARCA1	92	83.709	ENSAPEG00000011117	smarca5	99	84.080	Amphiprion_percula
ENSPPAG00000034647	SMARCA1	93	83.299	ENSATEG00000012894	smarca5	94	83.714	Anabas_testudineus
ENSPPAG00000034647	SMARCA1	93	93.279	ENSAPLG00000013149	SMARCA1	100	93.279	Anas_platyrhynchos
ENSPPAG00000034647	SMARCA1	97	89.612	ENSACAG00000011376	SMARCA1	95	91.491	Anolis_carolinensis
ENSPPAG00000034647	SMARCA1	100	94.802	ENSANAG00000023098	SMARCA1	100	94.802	Aotus_nancymaae
ENSPPAG00000034647	SMARCA1	96	81.158	ENSACLG00000025356	smarca5	95	83.165	Astatotilapia_calliptera
ENSPPAG00000034647	SMARCA1	98	80.754	ENSAMXG00000005709	smarca5	94	84.000	Astyanax_mexicanus
ENSPPAG00000034647	SMARCA1	88	88.495	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSPPAG00000034647	SMARCA1	99	97.450	ENSBTAG00000002292	SMARCA1	99	97.429	Bos_taurus
ENSPPAG00000034647	SMARCA1	93	63.673	WBGene00002169	isw-1	97	63.673	Caenorhabditis_elegans
ENSPPAG00000034647	SMARCA1	100	99.716	ENSCJAG00000002868	SMARCA1	100	99.716	Callithrix_jacchus
ENSPPAG00000034647	SMARCA1	100	88.941	ENSCAFG00000018673	SMARCA1	99	88.824	Canis_familiaris
ENSPPAG00000034647	SMARCA1	100	98.677	ENSCAFG00020001751	SMARCA1	100	98.677	Canis_lupus_dingo
ENSPPAG00000034647	SMARCA1	100	97.549	ENSCHIG00000009837	SMARCA1	100	97.549	Capra_hircus
ENSPPAG00000034647	SMARCA1	95	98.900	ENSTSYG00000004240	SMARCA1	98	98.269	Carlito_syrichta
ENSPPAG00000034647	SMARCA1	98	95.989	ENSCPOG00000013601	SMARCA1	99	95.989	Cavia_porcellus
ENSPPAG00000034647	SMARCA1	100	96.786	ENSCCAG00000030817	SMARCA1	100	96.786	Cebus_capucinus
ENSPPAG00000034647	SMARCA1	100	100.000	ENSCATG00000015921	SMARCA1	100	100.000	Cercocebus_atys
ENSPPAG00000034647	SMARCA1	100	97.070	ENSCLAG00000002171	SMARCA1	100	97.070	Chinchilla_lanigera
ENSPPAG00000034647	SMARCA1	100	99.905	ENSCSAG00000008460	SMARCA1	100	99.905	Chlorocebus_sabaeus
ENSPPAG00000034647	SMARCA1	95	92.707	ENSCPBG00000001146	SMARCA1	94	92.793	Chrysemys_picta_bellii
ENSPPAG00000034647	SMARCA1	92	73.797	ENSCING00000004110	swi/snf	97	73.797	Ciona_intestinalis
ENSPPAG00000034647	SMARCA1	92	73.069	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSPPAG00000034647	SMARCA1	100	99.907	ENSCANG00000007183	SMARCA1	100	99.907	Colobus_angolensis_palliatus
ENSPPAG00000034647	SMARCA1	100	95.940	ENSCGRG00001010776	Smarca1	98	96.343	Cricetulus_griseus_chok1gshd
ENSPPAG00000034647	SMARCA1	93	95.879	ENSCGRG00000015301	Smarca1	98	96.356	Cricetulus_griseus_crigri
ENSPPAG00000034647	SMARCA1	92	83.709	ENSCSEG00000000328	smarca5	95	83.114	Cynoglossus_semilaevis
ENSPPAG00000034647	SMARCA1	93	83.096	ENSCVAG00000008668	smarca5	99	83.628	Cyprinodon_variegatus
ENSPPAG00000034647	SMARCA1	93	85.375	ENSDARG00000012776	smarca1	97	85.375	Danio_rerio
ENSPPAG00000034647	SMARCA1	93	82.727	ENSDARG00000052348	smarca5	95	82.727	Danio_rerio
ENSPPAG00000034647	SMARCA1	98	96.232	ENSDNOG00000004315	SMARCA1	99	96.232	Dasypus_novemcinctus
ENSPPAG00000034647	SMARCA1	98	96.425	ENSDORG00000009270	Smarca1	99	96.425	Dipodomys_ordii
ENSPPAG00000034647	SMARCA1	92	73.081	FBgn0011604	Iswi	98	72.305	Drosophila_melanogaster
ENSPPAG00000034647	SMARCA1	77	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSPPAG00000034647	SMARCA1	93	80.899	ENSEBUG00000001239	smarca5	96	80.899	Eptatretus_burgeri
ENSPPAG00000034647	SMARCA1	97	92.692	ENSEASG00005008218	SMARCA1	100	93.333	Equus_asinus_asinus
ENSPPAG00000034647	SMARCA1	100	98.021	ENSECAG00000012106	SMARCA1	100	98.021	Equus_caballus
ENSPPAG00000034647	SMARCA1	75	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSPPAG00000034647	SMARCA1	94	86.540	ENSELUG00000010515	smarca1	98	86.927	Esox_lucius
ENSPPAG00000034647	SMARCA1	100	98.677	ENSFCAG00000018496	SMARCA1	100	98.677	Felis_catus
ENSPPAG00000034647	SMARCA1	86	93.538	ENSFALG00000000209	SMARCA1	98	93.640	Ficedula_albicollis
ENSPPAG00000034647	SMARCA1	93	97.982	ENSFDAG00000009818	SMARCA1	97	97.982	Fukomys_damarensis
ENSPPAG00000034647	SMARCA1	99	79.103	ENSFHEG00000007687	smarca5	94	82.828	Fundulus_heteroclitus
ENSPPAG00000034647	SMARCA1	94	91.037	ENSGALG00000008431	SMARCA1	96	93.018	Gallus_gallus
ENSPPAG00000034647	SMARCA1	93	83.503	ENSGAFG00000017731	smarca5	95	82.828	Gambusia_affinis
ENSPPAG00000034647	SMARCA1	92	93.519	ENSGAGG00000023575	SMARCA1	100	93.519	Gopherus_agassizii
ENSPPAG00000034647	SMARCA1	75	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSPPAG00000034647	SMARCA1	100	97.070	ENSHGLG00000003080	SMARCA1	100	97.070	Heterocephalus_glaber_female
ENSPPAG00000034647	SMARCA1	94	96.803	ENSHGLG00100001102	SMARCA1	100	96.803	Heterocephalus_glaber_male
ENSPPAG00000034647	SMARCA1	92	83.538	ENSHCOG00000005458	smarca5	95	82.727	Hippocampus_comes
ENSPPAG00000034647	SMARCA1	97	80.607	ENSIPUG00000005229	SMARCA5	97	82.657	Ictalurus_punctatus
ENSPPAG00000034647	SMARCA1	95	85.149	ENSIPUG00000016905	Smarca1	99	86.925	Ictalurus_punctatus
ENSPPAG00000034647	SMARCA1	100	98.299	ENSSTOG00000014524	SMARCA1	100	98.299	Ictidomys_tridecemlineatus
ENSPPAG00000034647	SMARCA1	100	96.143	ENSJJAG00000002593	Smarca1	100	96.143	Jaculus_jaculus
ENSPPAG00000034647	SMARCA1	92	83.742	ENSKMAG00000003777	smarca5	95	82.929	Kryptolebias_marmoratus
ENSPPAG00000034647	SMARCA1	94	81.637	ENSLBEG00000018112	smarca5	95	82.626	Labrus_bergylta
ENSPPAG00000034647	SMARCA1	88	83.888	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSPPAG00000034647	SMARCA1	96	89.250	ENSLACG00000016697	SMARCA1	98	90.190	Latimeria_chalumnae
ENSPPAG00000034647	SMARCA1	94	88.855	ENSLOCG00000014591	smarca1	97	88.855	Lepisosteus_oculatus
ENSPPAG00000034647	SMARCA1	95	96.720	ENSLAFG00000000896	SMARCA1	100	96.720	Loxodonta_africana
ENSPPAG00000034647	SMARCA1	100	100.000	ENSMFAG00000002117	SMARCA1	100	100.000	Macaca_fascicularis
ENSPPAG00000034647	SMARCA1	100	100.000	ENSMMUG00000008818	SMARCA1	100	100.000	Macaca_mulatta
ENSPPAG00000034647	SMARCA1	100	100.000	ENSMNEG00000041768	SMARCA1	100	100.000	Macaca_nemestrina
ENSPPAG00000034647	SMARCA1	100	99.907	ENSMLEG00000043198	SMARCA1	100	99.907	Mandrillus_leucophaeus
ENSPPAG00000034647	SMARCA1	93	83.707	ENSMAMG00000014294	smarca5	96	82.583	Mastacembelus_armatus
ENSPPAG00000034647	SMARCA1	96	81.158	ENSMZEG00005009369	smarca5	95	83.165	Maylandia_zebra
ENSPPAG00000034647	SMARCA1	95	91.330	ENSMGAG00000007042	SMARCA1	99	91.494	Meleagris_gallopavo
ENSPPAG00000034647	SMARCA1	98	96.275	ENSMAUG00000008133	Smarca1	99	96.275	Mesocricetus_auratus
ENSPPAG00000034647	SMARCA1	100	98.299	ENSMICG00000015768	SMARCA1	100	98.299	Microcebus_murinus
ENSPPAG00000034647	SMARCA1	100	95.673	ENSMOCG00000009464	Smarca1	100	95.673	Microtus_ochrogaster
ENSPPAG00000034647	SMARCA1	93	81.231	ENSMMOG00000005547	smarca5	99	81.231	Mola_mola
ENSPPAG00000034647	SMARCA1	98	89.555	ENSMODG00000013187	-	99	89.545	Monodelphis_domestica
ENSPPAG00000034647	SMARCA1	92	83.333	ENSMALG00000002081	smarca5	97	82.922	Monopterus_albus
ENSPPAG00000034647	SMARCA1	100	95.861	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.861	Mus_caroli
ENSPPAG00000034647	SMARCA1	100	95.861	ENSMUSG00000031099	Smarca1	100	95.861	Mus_musculus
ENSPPAG00000034647	SMARCA1	100	95.955	MGP_PahariEiJ_G0031579	Smarca1	100	95.955	Mus_pahari
ENSPPAG00000034647	SMARCA1	100	95.955	MGP_SPRETEiJ_G0034192	Smarca1	100	95.955	Mus_spretus
ENSPPAG00000034647	SMARCA1	100	98.224	ENSMPUG00000017423	SMARCA1	95	98.224	Mustela_putorius_furo
ENSPPAG00000034647	SMARCA1	100	94.590	ENSMLUG00000029614	SMARCA1	100	94.030	Myotis_lucifugus
ENSPPAG00000034647	SMARCA1	98	97.039	ENSNGAG00000006492	Smarca1	99	97.039	Nannospalax_galili
ENSPPAG00000034647	SMARCA1	93	83.809	ENSNBRG00000004463	smarca5	99	83.131	Neolamprologus_brichardi
ENSPPAG00000034647	SMARCA1	100	99.159	ENSNLEG00000015179	SMARCA1	100	99.159	Nomascus_leucogenys
ENSPPAG00000034647	SMARCA1	89	82.038	ENSMEUG00000008819	SMARCA1	99	82.019	Notamacropus_eugenii
ENSPPAG00000034647	SMARCA1	98	96.466	ENSODEG00000012163	SMARCA1	99	96.466	Octodon_degus
ENSPPAG00000034647	SMARCA1	96	81.256	ENSONIG00000009993	smarca5	95	83.266	Oreochromis_niloticus
ENSPPAG00000034647	SMARCA1	92	93.827	ENSOANG00000002862	SMARCA1	100	93.827	Ornithorhynchus_anatinus
ENSPPAG00000034647	SMARCA1	100	96.692	ENSOCUG00000001047	SMARCA1	100	96.692	Oryctolagus_cuniculus
ENSPPAG00000034647	SMARCA1	92	83.640	ENSORLG00000021998	smarca5	95	82.828	Oryzias_latipes
ENSPPAG00000034647	SMARCA1	92	83.742	ENSORLG00020017679	smarca5	95	82.929	Oryzias_latipes_hni
ENSPPAG00000034647	SMARCA1	92	83.640	ENSORLG00015017210	smarca5	95	82.727	Oryzias_latipes_hsok
ENSPPAG00000034647	SMARCA1	92	83.640	ENSOMEG00000000086	smarca5	95	82.727	Oryzias_melastigma
ENSPPAG00000034647	SMARCA1	98	98.376	ENSOGAG00000004399	SMARCA1	99	98.376	Otolemur_garnettii
ENSPPAG00000034647	SMARCA1	95	97.335	ENSOARG00000014638	SMARCA1	100	98.878	Ovis_aries
ENSPPAG00000034647	SMARCA1	100	98.677	ENSPPRG00000008929	SMARCA1	100	98.677	Panthera_pardus
ENSPPAG00000034647	SMARCA1	95	97.151	ENSPTIG00000000915	SMARCA1	98	97.151	Panthera_tigris_altaica
ENSPPAG00000034647	SMARCA1	100	100.000	ENSPTRG00000049876	SMARCA1	100	100.000	Pan_troglodytes
ENSPPAG00000034647	SMARCA1	100	100.000	ENSPANG00000003871	SMARCA1	100	100.000	Papio_anubis
ENSPPAG00000034647	SMARCA1	89	87.315	ENSPKIG00000013411	smarca1	98	87.124	Paramormyrops_kingsleyae
ENSPPAG00000034647	SMARCA1	95	91.807	ENSPSIG00000010101	SMARCA1	100	93.210	Pelodiscus_sinensis
ENSPPAG00000034647	SMARCA1	98	96.944	ENSPEMG00000017503	Smarca1	99	96.944	Peromyscus_maniculatus_bairdii
ENSPPAG00000034647	SMARCA1	95	92.108	ENSPCIG00000015460	SMARCA1	98	92.192	Phascolarctos_cinereus
ENSPPAG00000034647	SMARCA1	92	83.742	ENSPFOG00000007649	smarca5	95	82.828	Poecilia_formosa
ENSPPAG00000034647	SMARCA1	92	83.742	ENSPLAG00000003363	smarca5	95	82.828	Poecilia_latipinna
ENSPPAG00000034647	SMARCA1	92	83.640	ENSPMEG00000019849	smarca5	95	82.727	Poecilia_mexicana
ENSPPAG00000034647	SMARCA1	92	83.640	ENSPREG00000023250	smarca5	95	82.727	Poecilia_reticulata
ENSPPAG00000034647	SMARCA1	100	97.259	ENSPPYG00000020703	SMARCA1	100	97.259	Pongo_abelii
ENSPPAG00000034647	SMARCA1	77	89.189	ENSPCOG00000020722	SMARCA1	94	93.539	Propithecus_coquereli
ENSPPAG00000034647	SMARCA1	92	97.297	ENSPVAG00000003805	SMARCA1	94	97.297	Pteropus_vampyrus
ENSPPAG00000034647	SMARCA1	55	84.384	ENSPNYG00000012299	smarca5	92	82.933	Pundamilia_nyererei
ENSPPAG00000034647	SMARCA1	100	96.408	ENSRNOG00000003762	Smarca1	100	96.408	Rattus_norvegicus
ENSPPAG00000034647	SMARCA1	100	99.907	ENSRROG00000034167	SMARCA1	100	99.907	Rhinopithecus_roxellana
ENSPPAG00000034647	SMARCA1	96	98.258	ENSSBOG00000020641	SMARCA1	100	99.796	Saimiri_boliviensis_boliviensis
ENSPPAG00000034647	SMARCA1	92	86.742	ENSSHAG00000013518	SMARCA1	99	86.742	Sarcophilus_harrisii
ENSPPAG00000034647	SMARCA1	98	85.314	ENSSFOG00015009043	smarca1	98	87.675	Scleropages_formosus
ENSPPAG00000034647	SMARCA1	95	82.154	ENSSFOG00015016794	smarca5	100	83.814	Scleropages_formosus
ENSPPAG00000034647	SMARCA1	93	82.371	ENSSMAG00000004801	smarca5	95	82.371	Scophthalmus_maximus
ENSPPAG00000034647	SMARCA1	93	83.198	ENSSDUG00000020690	smarca5	96	82.525	Seriola_dumerili
ENSPPAG00000034647	SMARCA1	93	83.198	ENSSLDG00000025190	smarca5	96	82.525	Seriola_lalandi_dorsalis
ENSPPAG00000034647	SMARCA1	85	90.275	ENSSARG00000000842	SMARCA1	92	90.275	Sorex_araneus
ENSPPAG00000034647	SMARCA1	92	92.119	ENSSPUG00000000590	SMARCA1	94	92.103	Sphenodon_punctatus
ENSPPAG00000034647	SMARCA1	93	83.299	ENSSPAG00000002894	smarca5	97	84.026	Stegastes_partitus
ENSPPAG00000034647	SMARCA1	98	97.784	ENSSSCG00000012649	SMARCA1	99	97.784	Sus_scrofa
ENSPPAG00000034647	SMARCA1	93	92.770	ENSTGUG00000003899	-	100	92.770	Taeniopygia_guttata
ENSPPAG00000034647	SMARCA1	93	83.401	ENSTRUG00000014094	smarca5	95	82.727	Takifugu_rubripes
ENSPPAG00000034647	SMARCA1	92	82.582	ENSTNIG00000017717	smarca5	94	81.616	Tetraodon_nigroviridis
ENSPPAG00000034647	SMARCA1	92	91.304	ENSTBEG00000014973	SMARCA1	99	91.304	Tupaia_belangeri
ENSPPAG00000034647	SMARCA1	92	95.320	ENSTTRG00000006168	SMARCA1	99	95.320	Tursiops_truncatus
ENSPPAG00000034647	SMARCA1	100	98.110	ENSUAMG00000020201	SMARCA1	100	98.110	Ursus_americanus
ENSPPAG00000034647	SMARCA1	95	94.071	ENSUMAG00000004073	SMARCA1	97	98.783	Ursus_maritimus
ENSPPAG00000034647	SMARCA1	77	99.675	ENSVPAG00000010492	-	85	99.675	Vicugna_pacos
ENSPPAG00000034647	SMARCA1	95	99.000	ENSVVUG00000008878	SMARCA1	99	99.060	Vulpes_vulpes
ENSPPAG00000034647	SMARCA1	94	89.347	ENSXETG00000001526	smarca1	99	89.347	Xenopus_tropicalis
ENSPPAG00000034647	SMARCA1	93	83.401	ENSXCOG00000011170	smarca5	98	82.727	Xiphophorus_couchianus
ENSPPAG00000034647	SMARCA1	93	83.401	ENSXMAG00000009678	smarca5	97	84.978	Xiphophorus_maculatus