EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000034974 (Gene tree)
Gene ID: 100993892
Gene Symbol: -
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 30014 bases
Position: chr17:13497042-13527055
Accession: 100993892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000023601	AD	PF09793.9	2.8e-24	1	1
ENSPPAP00000023612	AD	PF09793.9	5.5e-24	1	1
ENSPPAP00000023610	AD	PF09793.9	7.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000046435	-	429	-	ENSPPAP00000023610	142 (aa)	-	A0A2R9B1Y0
ENSPPAT00000046437	-	663	-	ENSPPAP00000023612	220 (aa)	-	A0A2R9B8M7
ENSPPAT00000046426	-	558	XM_014342007	ENSPPAP00000023601	185 (aa)	XP_014197493	A0A2R9B229

Gene Model

Click here to download ENSPPAG00000034974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000034974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000034974	-	92	100.000	ENSG00000161654	LSM12	100	91.304	Homo_sapiens
ENSPPAG00000034974	-	100	76.531	ENSAPOG00000007907	lsm12b	100	76.531	Acanthochromis_polyacanthus
ENSPPAG00000034974	-	92	100.000	ENSAMEG00000018321	LSM12	100	88.384	Ailuropoda_melanoleuca
ENSPPAG00000034974	-	100	74.490	ENSACIG00000008538	lsm12b	100	74.490	Amphilophus_citrinellus
ENSPPAG00000034974	-	100	76.020	ENSAOCG00000021847	lsm12b	88	76.020	Amphiprion_ocellaris
ENSPPAG00000034974	-	100	76.020	ENSAPEG00000002252	lsm12b	100	76.020	Amphiprion_percula
ENSPPAG00000034974	-	100	75.510	ENSATEG00000005705	lsm12b	100	75.510	Anabas_testudineus
ENSPPAG00000034974	-	92	91.743	ENSACAG00000004618	LSM12	99	83.938	Anolis_carolinensis
ENSPPAG00000034974	-	100	92.254	ENSANAG00000029011	LSM12	100	92.254	Aotus_nancymaae
ENSPPAG00000034974	-	100	75.000	ENSACLG00000026332	lsm12b	100	75.000	Astatotilapia_calliptera
ENSPPAG00000034974	-	100	75.510	ENSAMXG00000032952	lsm12b	100	75.510	Astyanax_mexicanus
ENSPPAG00000034974	-	100	70.408	ENSAMXG00000036117	lsm12a	91	70.408	Astyanax_mexicanus
ENSPPAG00000034974	-	92	100.000	ENSBTAG00000016252	LSM12	100	89.744	Bos_taurus
ENSPPAG00000034974	-	100	92.254	ENSCJAG00000048480	LSM12	100	92.254	Callithrix_jacchus
ENSPPAG00000034974	-	92	100.000	ENSCAFG00000014379	LSM12	92	89.744	Canis_familiaris
ENSPPAG00000034974	-	92	100.000	ENSCAFG00020012173	LSM12	100	89.744	Canis_lupus_dingo
ENSPPAG00000034974	-	92	100.000	ENSCHIG00000018175	LSM12	100	89.744	Capra_hircus
ENSPPAG00000034974	-	92	100.000	ENSTSYG00000036361	LSM12	100	89.744	Carlito_syrichta
ENSPPAG00000034974	-	83	98.693	ENSCAPG00000009647	LSM12	84	98.693	Cavia_aperea
ENSPPAG00000034974	-	92	98.165	ENSCPOG00000012860	LSM12	100	90.141	Cavia_porcellus
ENSPPAG00000034974	-	100	92.254	ENSCCAG00000032905	LSM12	100	92.254	Cebus_capucinus
ENSPPAG00000034974	-	100	92.254	ENSCATG00000030577	-	100	92.254	Cercocebus_atys
ENSPPAG00000034974	-	92	100.000	ENSCLAG00000015759	LSM12	100	90.845	Chinchilla_lanigera
ENSPPAG00000034974	-	92	100.000	ENSCSAG00000003486	LSM12	100	89.231	Chlorocebus_sabaeus
ENSPPAG00000034974	-	77	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSPPAG00000034974	-	91	95.000	ENSCPBG00000027105	LSM12	99	83.420	Chrysemys_picta_bellii
ENSPPAG00000034974	-	100	92.254	ENSCANG00000043328	LSM12	100	92.254	Colobus_angolensis_palliatus
ENSPPAG00000034974	-	100	92.254	ENSCGRG00001002094	Lsm12	100	92.254	Cricetulus_griseus_chok1gshd
ENSPPAG00000034974	-	94	90.230	ENSCGRG00000004316	Lsm12	98	90.230	Cricetulus_griseus_crigri
ENSPPAG00000034974	-	100	75.000	ENSCSEG00000008434	lsm12b	100	75.000	Cynoglossus_semilaevis
ENSPPAG00000034974	-	100	75.510	ENSCVAG00000008755	lsm12b	100	75.510	Cyprinodon_variegatus
ENSPPAG00000034974	-	100	67.857	ENSDARG00000028848	lsm12a	100	67.857	Danio_rerio
ENSPPAG00000034974	-	100	76.020	ENSDARG00000109510	lsm12b	100	76.020	Danio_rerio
ENSPPAG00000034974	-	92	100.000	ENSDNOG00000002418	LSM12	91	89.231	Dasypus_novemcinctus
ENSPPAG00000034974	-	100	92.254	ENSDORG00000016381	Lsm12	100	92.254	Dipodomys_ordii
ENSPPAG00000034974	-	92	100.000	ENSETEG00000008374	LSM12	100	89.231	Echinops_telfairi
ENSPPAG00000034974	-	83	88.235	ENSETEG00000011012	-	87	88.235	Echinops_telfairi
ENSPPAG00000034974	-	83	54.268	ENSEBUG00000016299	lsm12a	92	54.268	Eptatretus_burgeri
ENSPPAG00000034974	-	92	100.000	ENSEASG00005010155	LSM12	100	89.744	Equus_asinus_asinus
ENSPPAG00000034974	-	100	92.254	ENSECAG00000009071	LSM12	100	92.254	Equus_caballus
ENSPPAG00000034974	-	83	98.693	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSPPAG00000034974	-	100	74.490	ENSELUG00000015538	lsm12b	100	69.898	Esox_lucius
ENSPPAG00000034974	-	100	72.959	ENSELUG00000000256	-	100	72.959	Esox_lucius
ENSPPAG00000034974	-	92	100.000	ENSFCAG00000037021	LSM12	100	89.744	Felis_catus
ENSPPAG00000034974	-	80	99.324	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSPPAG00000034974	-	100	74.490	ENSFHEG00000019913	lsm12b	100	74.490	Fundulus_heteroclitus
ENSPPAG00000034974	-	83	84.314	ENSGMOG00000015449	lsm12b	97	84.314	Gadus_morhua
ENSPPAG00000034974	-	83	94.118	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSPPAG00000034974	-	100	75.000	ENSGAFG00000011829	lsm12b	100	75.000	Gambusia_affinis
ENSPPAG00000034974	-	83	84.967	ENSGACG00000003428	lsm12b	97	84.967	Gasterosteus_aculeatus
ENSPPAG00000034974	-	91	95.000	ENSGAGG00000021965	LSM12	99	84.456	Gopherus_agassizii
ENSPPAG00000034974	-	100	92.254	ENSGGOG00000010589	-	100	92.254	Gorilla_gorilla
ENSPPAG00000034974	-	83	84.967	ENSHBUG00000007667	lsm12b	68	84.967	Haplochromis_burtoni
ENSPPAG00000034974	-	100	92.254	ENSHGLG00000011411	LSM12	100	92.254	Heterocephalus_glaber_female
ENSPPAG00000034974	-	83	100.000	ENSHGLG00100000241	LSM12	81	100.000	Heterocephalus_glaber_male
ENSPPAG00000034974	-	100	74.490	ENSHCOG00000002094	lsm12b	100	74.490	Hippocampus_comes
ENSPPAG00000034974	-	100	76.020	ENSIPUG00000014800	lsm12	100	76.020	Ictalurus_punctatus
ENSPPAG00000034974	-	99	66.495	ENSIPUG00000008936	lsm12a	99	66.495	Ictalurus_punctatus
ENSPPAG00000034974	-	100	92.254	ENSSTOG00000007403	LSM12	100	92.254	Ictidomys_tridecemlineatus
ENSPPAG00000034974	-	92	100.000	ENSJJAG00000004364	-	100	91.549	Jaculus_jaculus
ENSPPAG00000034974	-	97	77.895	ENSJJAG00000011793	-	100	77.895	Jaculus_jaculus
ENSPPAG00000034974	-	79	72.956	ENSJJAG00000014652	-	95	72.956	Jaculus_jaculus
ENSPPAG00000034974	-	99	62.445	ENSKMAG00000007704	lsm12b	71	62.445	Kryptolebias_marmoratus
ENSPPAG00000034974	-	100	76.020	ENSLBEG00000027999	lsm12b	100	76.020	Labrus_bergylta
ENSPPAG00000034974	-	99	80.311	ENSLACG00000015981	LSM12	99	80.311	Latimeria_chalumnae
ENSPPAG00000034974	-	100	74.490	ENSLOCG00000013079	lsm12b	99	74.490	Lepisosteus_oculatus
ENSPPAG00000034974	-	92	100.000	ENSLAFG00000005202	LSM12	100	89.744	Loxodonta_africana
ENSPPAG00000034974	-	100	92.254	ENSMFAG00000031376	LSM12	100	92.254	Macaca_fascicularis
ENSPPAG00000034974	-	61	86.207	ENSMMUG00000038408	-	79	86.207	Macaca_mulatta
ENSPPAG00000034974	-	100	62.676	ENSMMUG00000042106	-	79	86.207	Macaca_mulatta
ENSPPAG00000034974	-	100	92.254	ENSMMUG00000006804	LSM12	100	92.254	Macaca_mulatta
ENSPPAG00000034974	-	100	92.254	ENSMNEG00000030594	-	100	92.254	Macaca_nemestrina
ENSPPAG00000034974	-	100	92.254	ENSMLEG00000039934	LSM12	100	92.254	Mandrillus_leucophaeus
ENSPPAG00000034974	-	100	75.510	ENSMAMG00000004279	lsm12b	100	75.510	Mastacembelus_armatus
ENSPPAG00000034974	-	100	75.000	ENSMZEG00005005754	lsm12b	100	75.000	Maylandia_zebra
ENSPPAG00000034974	-	92	100.000	ENSMICG00000037219	LSM12	100	91.549	Microcebus_murinus
ENSPPAG00000034974	-	100	92.254	ENSMOCG00000019878	-	100	92.254	Microtus_ochrogaster
ENSPPAG00000034974	-	92	95.455	ENSMOCG00000017015	-	86	74.872	Microtus_ochrogaster
ENSPPAG00000034974	-	100	75.510	ENSMMOG00000020848	lsm12b	100	75.510	Mola_mola
ENSPPAG00000034974	-	100	75.510	ENSMALG00000007578	lsm12b	100	75.510	Monopterus_albus
ENSPPAG00000034974	-	92	100.000	MGP_CAROLIEiJ_G0017241	Lsm12	100	91.549	Mus_caroli
ENSPPAG00000034974	-	100	92.254	ENSMUSG00000020922	Lsm12	100	92.254	Mus_musculus
ENSPPAG00000034974	-	100	92.254	MGP_PahariEiJ_G0018371	Lsm12	100	92.254	Mus_pahari
ENSPPAG00000034974	-	100	92.254	MGP_SPRETEiJ_G0018084	Lsm12	100	92.254	Mus_spretus
ENSPPAG00000034974	-	92	100.000	ENSMLUG00000006391	LSM12	100	89.231	Myotis_lucifugus
ENSPPAG00000034974	-	100	92.254	ENSNGAG00000001870	Lsm12	100	92.254	Nannospalax_galili
ENSPPAG00000034974	-	100	63.021	ENSNGAG00000015429	-	100	63.021	Nannospalax_galili
ENSPPAG00000034974	-	100	75.000	ENSNBRG00000006266	lsm12b	100	75.000	Neolamprologus_brichardi
ENSPPAG00000034974	-	100	92.254	ENSNLEG00000005580	-	100	92.254	Nomascus_leucogenys
ENSPPAG00000034974	-	71	100.000	ENSMEUG00000007501	-	100	86.061	Notamacropus_eugenii
ENSPPAG00000034974	-	92	100.000	ENSOPRG00000008552	LSM12	100	89.744	Ochotona_princeps
ENSPPAG00000034974	-	100	78.646	ENSODEG00000007886	-	74	78.646	Octodon_degus
ENSPPAG00000034974	-	92	98.165	ENSODEG00000017998	-	100	90.141	Octodon_degus
ENSPPAG00000034974	-	100	75.000	ENSONIG00000007933	lsm12b	100	75.000	Oreochromis_niloticus
ENSPPAG00000034974	-	51	97.260	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSPPAG00000034974	-	92	100.000	ENSOCUG00000008566	-	100	88.384	Oryctolagus_cuniculus
ENSPPAG00000034974	-	92	93.519	ENSOCUG00000024823	-	100	81.959	Oryctolagus_cuniculus
ENSPPAG00000034974	-	92	93.519	ENSOCUG00000021254	-	100	82.990	Oryctolagus_cuniculus
ENSPPAG00000034974	-	99	83.505	ENSOCUG00000027889	-	100	83.505	Oryctolagus_cuniculus
ENSPPAG00000034974	-	100	75.510	ENSORLG00000011310	lsm12b	100	75.510	Oryzias_latipes
ENSPPAG00000034974	-	100	75.510	ENSORLG00020002060	lsm12b	92	75.510	Oryzias_latipes_hni
ENSPPAG00000034974	-	100	75.510	ENSORLG00015001647	lsm12b	92	75.510	Oryzias_latipes_hsok
ENSPPAG00000034974	-	100	75.510	ENSOMEG00000006184	lsm12b	92	75.510	Oryzias_melastigma
ENSPPAG00000034974	-	92	100.000	ENSOGAG00000010489	LSM12	100	89.231	Otolemur_garnettii
ENSPPAG00000034974	-	92	100.000	ENSOARG00000006589	LSM12	100	87.065	Ovis_aries
ENSPPAG00000034974	-	92	100.000	ENSPPRG00000023420	LSM12	100	89.744	Panthera_pardus
ENSPPAG00000034974	-	83	100.000	ENSPTIG00000012704	-	82	100.000	Panthera_tigris_altaica
ENSPPAG00000034974	-	100	90.845	ENSPTIG00000014850	-	100	90.845	Panthera_tigris_altaica
ENSPPAG00000034974	-	100	92.254	ENSPTRG00000009261	LSM12	100	92.254	Pan_troglodytes
ENSPPAG00000034974	-	100	92.254	ENSPANG00000021315	-	100	92.254	Papio_anubis
ENSPPAG00000034974	-	99	67.526	ENSPKIG00000017932	-	99	67.526	Paramormyrops_kingsleyae
ENSPPAG00000034974	-	100	76.531	ENSPKIG00000021058	lsm12b	100	76.531	Paramormyrops_kingsleyae
ENSPPAG00000034974	-	100	75.510	ENSPMGG00000021344	lsm12b	100	75.510	Periophthalmus_magnuspinnatus
ENSPPAG00000034974	-	100	92.254	ENSPEMG00000012199	Lsm12	100	92.254	Peromyscus_maniculatus_bairdii
ENSPPAG00000034974	-	88	58.140	ENSPMAG00000005461	lsm12a	99	58.140	Petromyzon_marinus
ENSPPAG00000034974	-	92	100.000	ENSPCIG00000020244	LSM12	100	86.667	Phascolarctos_cinereus
ENSPPAG00000034974	-	100	73.980	ENSPFOG00000015930	lsm12b	100	73.980	Poecilia_formosa
ENSPPAG00000034974	-	100	73.980	ENSPLAG00000021089	lsm12b	100	73.980	Poecilia_latipinna
ENSPPAG00000034974	-	100	73.980	ENSPMEG00000012961	lsm12b	100	73.980	Poecilia_mexicana
ENSPPAG00000034974	-	83	84.314	ENSPREG00000010236	lsm12b	85	84.314	Poecilia_reticulata
ENSPPAG00000034974	-	92	100.000	ENSPPYG00000008344	LSM12	100	89.744	Pongo_abelii
ENSPPAG00000034974	-	81	86.792	ENSPCAG00000008790	LSM12	100	86.792	Procavia_capensis
ENSPPAG00000034974	-	100	92.254	ENSPCOG00000027951	LSM12	100	92.254	Propithecus_coquereli
ENSPPAG00000034974	-	92	100.000	ENSPVAG00000013706	LSM12	100	89.231	Pteropus_vampyrus
ENSPPAG00000034974	-	100	75.000	ENSPNYG00000003386	lsm12b	100	75.000	Pundamilia_nyererei
ENSPPAG00000034974	-	100	73.980	ENSPNAG00000004186	lsm12b	100	73.980	Pygocentrus_nattereri
ENSPPAG00000034974	-	100	68.878	ENSPNAG00000018435	lsm12a	100	68.878	Pygocentrus_nattereri
ENSPPAG00000034974	-	92	100.000	ENSRNOG00000020894	Lsm12	100	89.744	Rattus_norvegicus
ENSPPAG00000034974	-	100	92.254	ENSRBIG00000027910	LSM12	100	92.254	Rhinopithecus_bieti
ENSPPAG00000034974	-	100	92.254	ENSRROG00000045530	-	100	92.254	Rhinopithecus_roxellana
ENSPPAG00000034974	-	100	77.465	ENSRROG00000000537	-	100	77.465	Rhinopithecus_roxellana
ENSPPAG00000034974	-	61	36.735	YHR121W	-	68	32.061	Saccharomyces_cerevisiae
ENSPPAG00000034974	-	100	92.254	ENSSBOG00000025310	LSM12	100	92.254	Saimiri_boliviensis_boliviensis
ENSPPAG00000034974	-	83	96.078	ENSSHAG00000014914	LSM12	97	96.078	Sarcophilus_harrisii
ENSPPAG00000034974	-	100	76.531	ENSSFOG00015009612	lsm12	100	76.531	Scleropages_formosus
ENSPPAG00000034974	-	100	73.469	ENSSFOG00015020392	lsm12a	100	73.469	Scleropages_formosus
ENSPPAG00000034974	-	100	75.510	ENSSMAG00000008089	lsm12b	100	75.510	Scophthalmus_maximus
ENSPPAG00000034974	-	100	76.531	ENSSDUG00000012711	lsm12b	100	76.531	Seriola_dumerili
ENSPPAG00000034974	-	100	76.531	ENSSLDG00000007404	lsm12b	100	76.531	Seriola_lalandi_dorsalis
ENSPPAG00000034974	-	83	99.346	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSPPAG00000034974	-	92	95.455	ENSSPUG00000011984	LSM12	99	84.974	Sphenodon_punctatus
ENSPPAG00000034974	-	100	76.020	ENSSPAG00000017058	lsm12b	100	76.020	Stegastes_partitus
ENSPPAG00000034974	-	92	100.000	ENSSSCG00000032394	LSM12	100	89.744	Sus_scrofa
ENSPPAG00000034974	-	100	74.490	ENSTRUG00000007121	lsm12b	100	74.490	Takifugu_rubripes
ENSPPAG00000034974	-	100	75.000	ENSTNIG00000014436	lsm12b	100	75.000	Tetraodon_nigroviridis
ENSPPAG00000034974	-	92	100.000	ENSTBEG00000012523	-	100	89.231	Tupaia_belangeri
ENSPPAG00000034974	-	92	100.000	ENSTBEG00000012392	-	100	86.154	Tupaia_belangeri
ENSPPAG00000034974	-	92	100.000	ENSTTRG00000010433	LSM12	100	89.744	Tursiops_truncatus
ENSPPAG00000034974	-	92	100.000	ENSUAMG00000006313	LSM12	95	100.000	Ursus_americanus
ENSPPAG00000034974	-	83	100.000	ENSUMAG00000012987	LSM12	87	100.000	Ursus_maritimus
ENSPPAG00000034974	-	92	100.000	ENSVPAG00000011145	LSM12	100	84.103	Vicugna_pacos
ENSPPAG00000034974	-	92	100.000	ENSVVUG00000017581	LSM12	100	89.744	Vulpes_vulpes
ENSPPAG00000034974	-	77	83.486	ENSXETG00000003371	lsm12	55	83.486	Xenopus_tropicalis
ENSPPAG00000034974	-	100	75.000	ENSXCOG00000003994	lsm12b	100	75.000	Xiphophorus_couchianus
ENSPPAG00000034974	-	100	75.000	ENSXMAG00000020950	lsm12b	100	75.000	Xiphophorus_maculatus