EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000035007 (Gene tree)
Gene ID: 100981355
Gene Symbol: SF3B1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 43147 bases
Position: chr2B:202530200-202573346
Accession: 100981355
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000023843	SF3b1	PF08920.10	6.2e-47	1	1
ENSPPAP00000023845	SF3b1	PF08920.10	6.2e-47	1	1
ENSPPAP00000023837	SF3b1	PF08920.10	6.2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000046678	SF3B1-204	435	-	ENSPPAP00000023853	144 (aa)	-	A0A2R9B2S2
ENSPPAT00000046668	SF3B1-202	3903	-	ENSPPAP00000023843	1300 (aa)	-	A0A2R9B2R2
ENSPPAT00000046670	SF3B1-203	3906	-	ENSPPAP00000023845	1301 (aa)	-	A0A2R9B6I4
ENSPPAT00000046662	SF3B1-201	4332	XM_003825304	ENSPPAP00000023837	1304 (aa)	XP_003825352	A0A2R9B2K6

Gene Model

Click here to download ENSPPAG00000035007's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000035007's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000035007	SF3B1	100	100.000	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSPPAG00000035007	SF3B1	100	93.622	ENSAPOG00000011894	sf3b1	100	93.622	Acanthochromis_polyacanthus
ENSPPAG00000035007	SF3B1	99	99.923	ENSAMEG00000013809	SF3B1	99	99.923	Ailuropoda_melanoleuca
ENSPPAG00000035007	SF3B1	100	93.216	ENSACIG00000020910	sf3b1	97	93.064	Amphilophus_citrinellus
ENSPPAG00000035007	SF3B1	100	93.622	ENSAOCG00000004478	sf3b1	100	93.622	Amphiprion_ocellaris
ENSPPAG00000035007	SF3B1	100	93.622	ENSAPEG00000012937	sf3b1	100	93.622	Amphiprion_percula
ENSPPAG00000035007	SF3B1	100	93.693	ENSATEG00000020435	sf3b1	100	93.693	Anabas_testudineus
ENSPPAG00000035007	SF3B1	99	99.382	ENSAPLG00000003993	SF3B1	99	99.382	Anas_platyrhynchos
ENSPPAG00000035007	SF3B1	100	98.850	ENSACAG00000009612	SF3B1	100	98.850	Anolis_carolinensis
ENSPPAG00000035007	SF3B1	100	100.000	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSPPAG00000035007	SF3B1	100	92.857	ENSACLG00000023470	sf3b1	100	92.705	Astatotilapia_calliptera
ENSPPAG00000035007	SF3B1	100	94.149	ENSAMXG00000002219	sf3b1	100	93.997	Astyanax_mexicanus
ENSPPAG00000035007	SF3B1	100	99.923	ENSBTAG00000008915	SF3B1	100	99.923	Bos_taurus
ENSPPAG00000035007	SF3B1	98	66.440	WBGene00011605	sftb-1	98	66.516	Caenorhabditis_elegans
ENSPPAG00000035007	SF3B1	100	100.000	ENSCJAG00000003902	SF3B1	100	100.000	Callithrix_jacchus
ENSPPAG00000035007	SF3B1	100	100.000	ENSCAFG00000010826	SF3B1	100	100.000	Canis_familiaris
ENSPPAG00000035007	SF3B1	100	100.000	ENSCAFG00020004750	SF3B1	100	100.000	Canis_lupus_dingo
ENSPPAG00000035007	SF3B1	100	99.923	ENSCHIG00000015226	SF3B1	100	99.923	Capra_hircus
ENSPPAG00000035007	SF3B1	100	99.923	ENSTSYG00000009214	SF3B1	100	99.923	Carlito_syrichta
ENSPPAG00000035007	SF3B1	99	100.000	ENSCAPG00000006547	SF3B1	99	100.000	Cavia_aperea
ENSPPAG00000035007	SF3B1	99	100.000	ENSCPOG00000009353	SF3B1	100	100.000	Cavia_porcellus
ENSPPAG00000035007	SF3B1	100	100.000	ENSCCAG00000020506	SF3B1	100	100.000	Cebus_capucinus
ENSPPAG00000035007	SF3B1	100	100.000	ENSCATG00000035735	SF3B1	100	100.000	Cercocebus_atys
ENSPPAG00000035007	SF3B1	99	100.000	ENSCLAG00000014767	SF3B1	99	100.000	Chinchilla_lanigera
ENSPPAG00000035007	SF3B1	100	100.000	ENSCSAG00000011505	SF3B1	100	100.000	Chlorocebus_sabaeus
ENSPPAG00000035007	SF3B1	76	98.462	ENSCHOG00000009860	SF3B1	76	98.438	Choloepus_hoffmanni
ENSPPAG00000035007	SF3B1	100	99.233	ENSCPBG00000021902	SF3B1	100	99.233	Chrysemys_picta_bellii
ENSPPAG00000035007	SF3B1	69	78.060	ENSCING00000002558	-	99	78.771	Ciona_intestinalis
ENSPPAG00000035007	SF3B1	99	80.168	ENSCSAVG00000002559	-	99	79.771	Ciona_savignyi
ENSPPAG00000035007	SF3B1	100	100.000	ENSCANG00000029415	SF3B1	100	100.000	Colobus_angolensis_palliatus
ENSPPAG00000035007	SF3B1	100	100.000	ENSCGRG00001016990	Sf3b1	100	100.000	Cricetulus_griseus_chok1gshd
ENSPPAG00000035007	SF3B1	100	100.000	ENSCGRG00000005301	Sf3b1	100	100.000	Cricetulus_griseus_crigri
ENSPPAG00000035007	SF3B1	100	90.015	ENSCSEG00000003860	sf3b1	100	89.939	Cynoglossus_semilaevis
ENSPPAG00000035007	SF3B1	96	93.676	ENSCVAG00000003680	sf3b1	99	93.676	Cyprinodon_variegatus
ENSPPAG00000035007	SF3B1	100	93.470	ENSDARG00000056138	sf3b1	100	93.394	Danio_rerio
ENSPPAG00000035007	SF3B1	100	99.923	ENSDNOG00000011754	SF3B1	100	99.923	Dasypus_novemcinctus
ENSPPAG00000035007	SF3B1	99	97.297	ENSDORG00000002399	Sf3b1	100	97.297	Dipodomys_ordii
ENSPPAG00000035007	SF3B1	100	76.618	FBgn0031266	Sf3b1	100	76.618	Drosophila_melanogaster
ENSPPAG00000035007	SF3B1	83	99.351	ENSETEG00000009188	SF3B1	100	99.351	Echinops_telfairi
ENSPPAG00000035007	SF3B1	99	87.270	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSPPAG00000035007	SF3B1	100	99.923	ENSEASG00005020159	SF3B1	98	99.923	Equus_asinus_asinus
ENSPPAG00000035007	SF3B1	100	99.923	ENSECAG00000021657	SF3B1	98	99.923	Equus_caballus
ENSPPAG00000035007	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSPPAG00000035007	SF3B1	100	93.132	ENSELUG00000005977	sf3b1	98	92.981	Esox_lucius
ENSPPAG00000035007	SF3B1	100	100.000	ENSFCAG00000005038	SF3B1	100	100.000	Felis_catus
ENSPPAG00000035007	SF3B1	99	99.459	ENSFALG00000004281	SF3B1	99	99.459	Ficedula_albicollis
ENSPPAG00000035007	SF3B1	100	100.000	ENSFDAG00000017510	SF3B1	100	100.000	Fukomys_damarensis
ENSPPAG00000035007	SF3B1	100	92.938	ENSFHEG00000014333	sf3b1	100	92.938	Fundulus_heteroclitus
ENSPPAG00000035007	SF3B1	100	93.531	ENSGMOG00000006773	sf3b1	100	93.531	Gadus_morhua
ENSPPAG00000035007	SF3B1	100	99.387	ENSGALG00000008038	SF3B1	100	99.387	Gallus_gallus
ENSPPAG00000035007	SF3B1	99	93.441	ENSGAFG00000000704	sf3b1	99	93.441	Gambusia_affinis
ENSPPAG00000035007	SF3B1	100	93.674	ENSGACG00000008839	sf3b1	100	93.674	Gasterosteus_aculeatus
ENSPPAG00000035007	SF3B1	100	98.553	ENSGAGG00000017478	SF3B1	100	98.553	Gopherus_agassizii
ENSPPAG00000035007	SF3B1	100	93.196	ENSGGOG00000009264	SF3B1	100	94.253	Gorilla_gorilla
ENSPPAG00000035007	SF3B1	99	92.922	ENSHBUG00000007705	sf3b1	99	92.770	Haplochromis_burtoni
ENSPPAG00000035007	SF3B1	99	100.000	ENSHGLG00000008285	-	99	100.000	Heterocephalus_glaber_female
ENSPPAG00000035007	SF3B1	99	97.992	ENSHGLG00100005535	-	99	97.992	Heterocephalus_glaber_male
ENSPPAG00000035007	SF3B1	100	92.976	ENSHCOG00000016775	sf3b1	100	92.825	Hippocampus_comes
ENSPPAG00000035007	SF3B1	100	93.997	ENSIPUG00000013171	sf3b1	100	93.997	Ictalurus_punctatus
ENSPPAG00000035007	SF3B1	100	100.000	ENSSTOG00000011034	SF3B1	100	100.000	Ictidomys_tridecemlineatus
ENSPPAG00000035007	SF3B1	99	99.922	ENSJJAG00000010903	Sf3b1	99	99.922	Jaculus_jaculus
ENSPPAG00000035007	SF3B1	100	93.106	ENSKMAG00000004009	sf3b1	100	93.030	Kryptolebias_marmoratus
ENSPPAG00000035007	SF3B1	100	93.588	ENSLBEG00000022208	sf3b1	100	93.435	Labrus_bergylta
ENSPPAG00000035007	SF3B1	99	92.490	ENSLACG00000014832	SF3B1	99	92.490	Latimeria_chalumnae
ENSPPAG00000035007	SF3B1	100	94.917	ENSLOCG00000003899	sf3b1	100	94.765	Lepisosteus_oculatus
ENSPPAG00000035007	SF3B1	100	100.000	ENSLAFG00000001956	SF3B1	100	100.000	Loxodonta_africana
ENSPPAG00000035007	SF3B1	99	100.000	ENSMMUG00000022430	SF3B1	99	100.000	Macaca_mulatta
ENSPPAG00000035007	SF3B1	100	100.000	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSPPAG00000035007	SF3B1	95	93.478	ENSMLEG00000026141	SF3B1	99	94.027	Mandrillus_leucophaeus
ENSPPAG00000035007	SF3B1	100	93.617	ENSMAMG00000010241	sf3b1	100	93.617	Mastacembelus_armatus
ENSPPAG00000035007	SF3B1	100	92.857	ENSMZEG00005021254	sf3b1	100	92.705	Maylandia_zebra
ENSPPAG00000035007	SF3B1	99	98.764	ENSMGAG00000007017	SF3B1	99	98.764	Meleagris_gallopavo
ENSPPAG00000035007	SF3B1	100	95.462	ENSMAUG00000009071	Sf3b1	99	95.753	Mesocricetus_auratus
ENSPPAG00000035007	SF3B1	100	99.923	ENSMICG00000013879	SF3B1	100	99.923	Microcebus_murinus
ENSPPAG00000035007	SF3B1	99	95.598	ENSMOCG00000000455	Sf3b1	99	95.598	Microtus_ochrogaster
ENSPPAG00000035007	SF3B1	84	93.059	ENSMMOG00000000475	sf3b1	100	93.059	Mola_mola
ENSPPAG00000035007	SF3B1	100	99.310	ENSMODG00000012275	SF3B1	100	99.310	Monodelphis_domestica
ENSPPAG00000035007	SF3B1	100	93.541	ENSMALG00000017211	sf3b1	100	93.541	Monopterus_albus
ENSPPAG00000035007	SF3B1	100	100.000	MGP_CAROLIEiJ_G0014141	Sf3b1	100	100.000	Mus_caroli
ENSPPAG00000035007	SF3B1	100	100.000	ENSMUSG00000025982	Sf3b1	100	100.000	Mus_musculus
ENSPPAG00000035007	SF3B1	100	100.000	MGP_SPRETEiJ_G0014947	Sf3b1	100	100.000	Mus_spretus
ENSPPAG00000035007	SF3B1	100	100.000	ENSMPUG00000007799	SF3B1	100	100.000	Mustela_putorius_furo
ENSPPAG00000035007	SF3B1	100	98.773	ENSMLUG00000000840	SF3B1	100	98.773	Myotis_lucifugus
ENSPPAG00000035007	SF3B1	99	100.000	ENSNGAG00000021884	-	100	99.692	Nannospalax_galili
ENSPPAG00000035007	SF3B1	100	89.109	ENSNBRG00000015816	sf3b1	100	89.109	Neolamprologus_brichardi
ENSPPAG00000035007	SF3B1	100	100.000	ENSNLEG00000006861	SF3B1	100	100.000	Nomascus_leucogenys
ENSPPAG00000035007	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSPPAG00000035007	SF3B1	100	88.113	ENSOPRG00000008596	SF3B1	100	88.113	Ochotona_princeps
ENSPPAG00000035007	SF3B1	100	100.000	ENSODEG00000011153	-	100	100.000	Octodon_degus
ENSPPAG00000035007	SF3B1	100	92.857	ENSONIG00000013758	sf3b1	100	92.705	Oreochromis_niloticus
ENSPPAG00000035007	SF3B1	83	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSPPAG00000035007	SF3B1	100	93.389	ENSORLG00000020219	sf3b1	100	93.389	Oryzias_latipes
ENSPPAG00000035007	SF3B1	100	93.389	ENSORLG00020001746	sf3b1	100	93.389	Oryzias_latipes_hni
ENSPPAG00000035007	SF3B1	64	90.952	ENSORLG00015001759	sf3b1	98	90.952	Oryzias_latipes_hsok
ENSPPAG00000035007	SF3B1	100	93.394	ENSOMEG00000019231	sf3b1	100	93.394	Oryzias_melastigma
ENSPPAG00000035007	SF3B1	100	99.923	ENSOARG00000015374	SF3B1	100	99.923	Ovis_aries
ENSPPAG00000035007	SF3B1	100	100.000	ENSPPRG00000009090	SF3B1	100	100.000	Panthera_pardus
ENSPPAG00000035007	SF3B1	100	100.000	ENSPTIG00000021557	SF3B1	100	100.000	Panthera_tigris_altaica
ENSPPAG00000035007	SF3B1	100	91.488	ENSPTRG00000012771	SF3B1	100	91.488	Pan_troglodytes
ENSPPAG00000035007	SF3B1	100	100.000	ENSPANG00000013417	SF3B1	100	100.000	Papio_anubis
ENSPPAG00000035007	SF3B1	100	95.053	ENSPKIG00000000784	sf3b1	100	94.901	Paramormyrops_kingsleyae
ENSPPAG00000035007	SF3B1	99	97.991	ENSPSIG00000017222	SF3B1	99	97.917	Pelodiscus_sinensis
ENSPPAG00000035007	SF3B1	90	94.019	ENSPMGG00000004330	sf3b1	99	93.850	Periophthalmus_magnuspinnatus
ENSPPAG00000035007	SF3B1	99	100.000	ENSPEMG00000010699	Sf3b1	100	100.000	Peromyscus_maniculatus_bairdii
ENSPPAG00000035007	SF3B1	100	90.053	ENSPMAG00000001311	sf3b1	100	90.205	Petromyzon_marinus
ENSPPAG00000035007	SF3B1	100	99.233	ENSPCIG00000010642	SF3B1	100	99.233	Phascolarctos_cinereus
ENSPPAG00000035007	SF3B1	100	93.323	ENSPFOG00000000073	sf3b1	100	93.323	Poecilia_formosa
ENSPPAG00000035007	SF3B1	100	93.394	ENSPLAG00000002293	sf3b1	100	93.394	Poecilia_latipinna
ENSPPAG00000035007	SF3B1	100	93.394	ENSPMEG00000000446	sf3b1	98	93.394	Poecilia_mexicana
ENSPPAG00000035007	SF3B1	100	93.470	ENSPREG00000019652	sf3b1	100	93.470	Poecilia_reticulata
ENSPPAG00000035007	SF3B1	100	98.814	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSPPAG00000035007	SF3B1	100	99.847	ENSPCAG00000009292	SF3B1	100	99.847	Procavia_capensis
ENSPPAG00000035007	SF3B1	100	99.923	ENSPCOG00000024074	SF3B1	100	99.923	Propithecus_coquereli
ENSPPAG00000035007	SF3B1	100	100.000	ENSPVAG00000008302	SF3B1	100	100.000	Pteropus_vampyrus
ENSPPAG00000035007	SF3B1	100	92.781	ENSPNYG00000014939	sf3b1	100	92.629	Pundamilia_nyererei
ENSPPAG00000035007	SF3B1	100	93.997	ENSPNAG00000008288	sf3b1	100	93.997	Pygocentrus_nattereri
ENSPPAG00000035007	SF3B1	100	100.000	ENSRNOG00000013516	Sf3b1	100	100.000	Rattus_norvegicus
ENSPPAG00000035007	SF3B1	99	96.448	ENSRBIG00000026096	SF3B1	100	96.237	Rhinopithecus_bieti
ENSPPAG00000035007	SF3B1	100	100.000	ENSRROG00000031308	SF3B1	100	100.000	Rhinopithecus_roxellana
ENSPPAG00000035007	SF3B1	100	100.000	ENSSBOG00000020080	SF3B1	100	100.000	Saimiri_boliviensis_boliviensis
ENSPPAG00000035007	SF3B1	100	99.310	ENSSHAG00000017564	SF3B1	100	99.310	Sarcophilus_harrisii
ENSPPAG00000035007	SF3B1	100	94.609	ENSSFOG00015021535	sf3b1	100	94.761	Scleropages_formosus
ENSPPAG00000035007	SF3B1	99	92.955	ENSSMAG00000013977	sf3b1	99	92.803	Scophthalmus_maximus
ENSPPAG00000035007	SF3B1	100	93.389	ENSSDUG00000017422	sf3b1	100	93.389	Seriola_dumerili
ENSPPAG00000035007	SF3B1	100	93.313	ENSSLDG00000019495	sf3b1	100	93.313	Seriola_lalandi_dorsalis
ENSPPAG00000035007	SF3B1	76	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSPPAG00000035007	SF3B1	100	99.080	ENSSPUG00000000410	SF3B1	100	99.080	Sphenodon_punctatus
ENSPPAG00000035007	SF3B1	100	93.693	ENSSPAG00000010451	sf3b1	99	93.693	Stegastes_partitus
ENSPPAG00000035007	SF3B1	91	99.579	ENSSSCG00000016075	SF3B1	100	100.000	Sus_scrofa
ENSPPAG00000035007	SF3B1	100	99.310	ENSTGUG00000010553	SF3B1	100	99.310	Taeniopygia_guttata
ENSPPAG00000035007	SF3B1	100	93.389	ENSTRUG00000015534	sf3b1	100	93.237	Takifugu_rubripes
ENSPPAG00000035007	SF3B1	88	100.000	ENSTBEG00000008714	SF3B1	93	100.000	Tupaia_belangeri
ENSPPAG00000035007	SF3B1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSPPAG00000035007	SF3B1	94	95.847	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSPPAG00000035007	SF3B1	100	100.000	ENSUMAG00000020945	SF3B1	100	100.000	Ursus_maritimus
ENSPPAG00000035007	SF3B1	100	91.871	ENSVPAG00000005798	SF3B1	100	91.871	Vicugna_pacos
ENSPPAG00000035007	SF3B1	100	100.000	ENSVVUG00000025948	SF3B1	95	100.000	Vulpes_vulpes
ENSPPAG00000035007	SF3B1	100	96.628	ENSXETG00000013339	sf3b1	100	96.628	Xenopus_tropicalis
ENSPPAG00000035007	SF3B1	100	89.908	ENSXCOG00000018086	sf3b1	100	89.794	Xiphophorus_couchianus
ENSPPAG00000035007	SF3B1	100	93.394	ENSXMAG00000007369	sf3b1	100	93.692	Xiphophorus_maculatus